CX295713
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: AB2A_ARATH (ABC transporter A family member 2 OS=Arabidopsis thaliana GN=ABCA2 PE=2 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 9.161e-19 Identity = 47/85 (55.29%), Postives = 61/85 (71.76%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 270 S + GDP +V LDEP+TGMDPI +R +W++I T++G+ A+ILTTHSM EA L RIGIM G+LRCIG+ LK+RFG Sbjct: 674 SVAVSLIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--TKKGR-AIILTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFG 755
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: AB7A_ARATH (ABC transporter A family member 7 OS=Arabidopsis thaliana GN=ABCA7 PE=1 SV=2) HSP 1 Score: 93.2041 bits (230), Expect = 1.563e-18 Identity = 51/137 (37.23%), Postives = 79/137 (57.66%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQ---ERVFDIPSQRRSLLDDLEVCIGGI 417 S I G+P +V +DEPSTG+DP +++ +W VI R TA+ILTTHSM EA+ LC R+GI V G L+CIG+P+ LK R+G + + ++E L + + ++++ I ++ L EV I + Sbjct: 761 SVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKRAKQN---TAIILTTHSMEEAEFLCDRLGIFVDGGLQCIGNPKELKGRYGGSYVFTMTTSSEHEQNVEKLIKDVSPNAKKIYHIAGTQKFELPKEEVRISEV 894
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: AB9A_ARATH (ABC transporter A family member 9 OS=Arabidopsis thaliana GN=ABCA9 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.041e-18 Identity = 47/85 (55.29%), Postives = 61/85 (71.76%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 270 S I GDP +V LDEP+TGMDPI +R +W++I +++G+ A+ILTTHSM EA L RIGIM G+LRCIG+ LK+RFG Sbjct: 676 SVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGR-AIILTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFG 757
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: AB12A_ARATH (ABC transporter A family member 12 OS=Arabidopsis thaliana GN=ABCA12 PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.041e-18 Identity = 50/137 (36.50%), Postives = 79/137 (57.66%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQ---ERVFDIPSQRRSLLDDLEVCIGGI 417 S I G+P +V LDEPSTG+DP +++ +W VI R TA+ILTTHSM EA+ LC R+GI V G L+CIG+ + LK+R+G + + ++E L + + ++++ + ++ L EV I + Sbjct: 743 SVAISLIGNPKVVYLDEPSTGLDPASRKNLWNVIKRAKQN---TAIILTTHSMEEAEFLCDRLGIFVDGGLQCIGNSKELKSRYGGSYVFTMTTSSKHEEEVERLVESVSPNAKKIYHLAGTQKFELPKQEVRIAEV 876
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: AB11A_ARATH (ABC transporter A family member 11 OS=Arabidopsis thaliana GN=ABCA11 PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 2.665e-18 Identity = 46/85 (54.12%), Postives = 61/85 (71.76%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 270 S + GDP +V LDEP+TGMDPI +R +W++I +++G+ A+ILTTHSM EA L RIGIM G+LRCIG+ LK+RFG Sbjct: 675 SVAVALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGR-AIILTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFG 756
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABC8B_MOUSE (ATP-binding cassette sub-family A member 8-B OS=Mus musculus GN=Abca8b PE=2 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 3.481e-18 Identity = 46/91 (50.55%), Postives = 65/91 (71.43%), Query Frame = 1 Query: 37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVKPTE 303 G+P I++LDEPSTG+DP ++ +W+ I + + A +LTTH M EA+ALC R+ I+V G+LRCIGS QHLK++FG LE++VK E Sbjct: 1432 GNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGA-LLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLKSKFGKDYLLEMKVKTLE 1521
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: AB10A_ARATH (ABC transporter A family member 10 OS=Arabidopsis thaliana GN=ABCA10 PE=2 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 3.481e-18 Identity = 50/137 (36.50%), Postives = 78/137 (56.93%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQII---QERVFDIPSQRRSLLDDLEVCIGGI 417 S I G+P +V +DEPSTG+DP +++ +W VI R TA+ILTTHSM EA+ LC R+GI V G L+C+G+P+ LK R+G + + +E + + I +RV+ + ++ + EV I + Sbjct: 735 SVAISLIGNPKVVYMDEPSTGLDPASRKDLWTVIQRAKQN---TAIILTTHSMEEAEFLCDRLGIFVDGGLQCVGNPKELKGRYGGSYVFTMTTSVEHEEKVERMVKHISPNSKRVYHLAGTQKFEIPKQEVMIADV 868
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA6_MOUSE (ATP-binding cassette sub-family A member 6 OS=Mus musculus GN=Abca6 PE=2 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.256e-17 Identity = 44/95 (46.32%), Postives = 62/95 (65.26%), Query Frame = 1 Query: 37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDL 321 G+ P++ILDEPSTG+D K +W+ I + + + V+L+TH + EA+ALC R IMV G+LRCIG QHLK +FG LE++ +VS L Sbjct: 1436 GNSPVLILDEPSTGLDVSGKHQVWQAIQAV-VKDNEKGVLLSTHDLAEAEALCDRAAIMVSGRLRCIGPIQHLKRKFGQDYVLELRVKDVSQEPL 1529
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCAB_DICDI (ABC transporter A family member 11 OS=Dictyostelium discoideum GN=abcA11 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.027e-17 Identity = 38/87 (43.68%), Postives = 60/87 (68.97%), Query Frame = 1 Query: 37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKP 297 GDP +V+LDEPST +DPI++ + +I L + ++I+TTHS+NE C R+ IMV G++RCIG+P HLK ++G+ +++ P Sbjct: 611 GDPQVVLLDEPSTSLDPISRNELHSLIDELKVNK---SIIMTTHSINEINQCCNRVAIMVDGKIRCIGTPNHLKHKYGSGYTIDIIP 694
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA2_DICDI (ABC transporter A family member 2 OS=Dictyostelium discoideum GN=abcA2 PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 5.027e-17 Identity = 42/95 (44.21%), Postives = 64/95 (67.37%), Query Frame = 1 Query: 10 EASCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 294 + S I G+P IV LDEPSTG D + ++++W V+S L+ + +ILT+HSM E +ALC R+ IM G+++C+GS QH+K++FG +VK Sbjct: 1437 KTSLSIAMLGNPSIVSLDEPSTGCDAVVRKYIWNVVSELAKDK---VIILTSHSMAEVEALCYRMTIMRDGKMKCLGSIQHIKSKFGAGYTFDVK 1528 HSP 2 Score: 68.9366 bits (167), Expect = 3.156e-11 Identity = 35/78 (44.87%), Postives = 53/78 (67.95%), Query Frame = 1 Query: 37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 270 G ++ LDE S+GMDP+++R +W+ + L ++G+T +ILTTH + EA L RI I+ G+LRC GS +LK +FG Sbjct: 635 GRSDVIFLDEVSSGMDPLSRRVVWDFL--LKYKKGRT-IILTTHYLEEADYLGDRIAIISHGKLRCDGSSLYLKNKFG 709 The following BLAST results are available for this feature:
BLAST of CX295713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 48
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295713 ID=CX295713; Name=CX295713; organism=Citrus clementina; type=EST; length=737bpback to top |