CX295713

Overview
NameCX295713
Unique NameCX295713
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA3_DICDI (ABC transporter A family member 3 OS=Dictyostelium discoideum GN=abcA3 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.910e-16
Identity = 40/86 (46.51%), Postives = 57/86 (66.28%), Query Frame = 1
Query:   37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 294
            G+P +  LDE S G+DP+  RFMW VI+ L   +    +ILTTHSM E  A+C R+ IM  G++ C+GS QH+K +FG+   ++VK
Sbjct: 1445 GNPSVCFLDEVSAGVDPVVARFMWNVITELKKDK---VIILTTHSMLECSAVCDRLTIMKSGKMMCLGSIQHIKDKFGSGYSIDVK 1527          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA5_DICDI (ABC transporter A family member 5 OS=Dictyostelium discoideum GN=abcA5 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.495e-16
Identity = 43/95 (45.26%), Postives = 63/95 (66.32%), Query Frame = 1
Query:   10 EASCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 294
            + S  I   G+P +V++DE S+G DPI +    +VIS L   +    +ILT+HSM+E QALC+R+ IM  GQ +C+GS QH+K++FG    +EVK
Sbjct: 1466 KVSLSIAMLGNPSVVLIDEASSGCDPIIRYRQCQVISELGKNK---VIILTSHSMSEIQALCSRMTIMRDGQFKCLGSTQHIKSKFGAGYSVEVK 1557          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA4_DICDI (ABC transporter A family member 4 OS=Dictyostelium discoideum GN=abcA4 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.258e-16
Identity = 43/95 (45.26%), Postives = 61/95 (64.21%), Query Frame = 1
Query:   10 EASCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 294
            + S  I   G P I++LDE S G+D   KRFMW V+  L   +   A+ILTTHS+ E QA+C ++ IM  G+L+ +GS QH+K +FG+   +EVK
Sbjct: 1437 KVSLSIACIGSPSILLLDEISCGVDACVKRFMWNVLMELKKNK---AIILTTHSIAECQAVCDKLTIMKDGKLQALGSNQHIKDKFGSGYSIEVK 1528          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA9_DICDI (ABC transporter A family member 9 OS=Dictyostelium discoideum GN=abcA9 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.873e-14
Identity = 39/96 (40.62%), Postives = 57/96 (59.38%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTE 303
            S  +   GD  I+ LDEPSTG+    +R +W  I+ L   +   ++ILTTHSM EA  L +RI I+  G+L+CIG+  HLK +FG+   + +   E
Sbjct:  673 SFAVAMTGDSSIIFLDEPSTGISSELRRDLWRTINDLKKNR---SIILTTHSMEEADVLSSRIAIISQGKLQCIGTQNHLKAKFGDGYSVRINVEE 765          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: CED7_CAEEL (ABC transporter ced-7 OS=Caenorhabditis elegans GN=ced-7 PE=1 SV=6)

HSP 1 Score: 75.0998 bits (183), Expect = 4.404e-13
Identity = 39/102 (38.24%), Postives = 66/102 (64.71%), Query Frame = 1
Query:   49 IVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERV 354
            ++ILDEP+ G+DP A+R +WE++         +A++LT+HSM+E +ALC+RI ++  G L  IGS Q LK+ +GN   + +   E +  D+  + Q++Q R+
Sbjct: 1523 MIILDEPTAGIDPKARREVWELLL-WCREHSNSALMLTSHSMDECEALCSRIAVLNRGSLIAIGSSQELKSLYGNNYTMTLSLYEPNQRDM--VVQLVQTRL 1621          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA6_DICDI (ABC transporter A family member 6 OS=Dictyostelium discoideum GN=abcA6 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.404e-13
Identity = 38/95 (40.00%), Postives = 59/95 (62.11%), Query Frame = 1
Query:   10 EASCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 294
            + S  +   G+P +  LDE S G D + +R +W+VIS L   +   ++ILT+HSM+E +ALC+RI IM  G+  C+ + Q +K RFG    ++VK
Sbjct: 1453 KVSLSMAMLGNPSVCFLDEISCGCDAVVRRQLWDVISELGKDK---SIILTSHSMSEVEALCSRITIMKEGKYTCLNTIQGVKNRFGAGYSIDVK 1544          

HSP 2 Score: 67.781 bits (164), Expect = 7.030e-11
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = 1
Query:   37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 270
            G   I+ LDE ++GMDP+++R +W+ +  L  ++GKT +ILTTH + EA  L  RI I+  G+LRC G+   LK RFG
Sbjct:  642 GRSKIIFLDEVTSGMDPVSRRQVWDFL--LKYKKGKT-IILTTHYLEEADYLGDRIAIISQGKLRCDGTSLFLKNRFG 716          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA7_DICDI (ABC transporter A family member 7 OS=Dictyostelium discoideum GN=abcA7 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.359e-12
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 273
            S  I   G+  I+ LDEP+TG+    ++ +W  I+ L   +   ++ILTTHSM EA  L  RI I+  G+L+CIG+  HLK +FG+
Sbjct:  667 SFAIAMTGESSIIFLDEPTTGLSIETRKDLWGTINELKKNR---SIILTTHSMQEADILSDRIAIVSQGKLQCIGTQTHLKQKFGD 749          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: NODI_RHIEC (Nod factor export ATP-binding protein I OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=nodI PE=3 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 3.156e-11
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 1
Query:   40 DPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHL 255
            DP ++++DEP+TG+DP A+  +WE +  L TR GKT +ILTTH M EA+ LC R+ ++ GG+    G P  L
Sbjct:  166 DPQLLVMDEPTTGLDPHARHLIWERLRSLLTR-GKT-IILTTHFMEEAERLCDRLCVLEGGRSIAEGRPHDL 235          
The following BLAST results are available for this feature:
BLAST of CX295713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
ABCA3_DICDI1.910e-1646.51ABC transporter A family member 3 OS=Dictyostelium... [more]
ABCA5_DICDI2.495e-1645.26ABC transporter A family member 5 OS=Dictyostelium... [more]
ABCA4_DICDI3.258e-1645.26ABC transporter A family member 4 OS=Dictyostelium... [more]
ABCA9_DICDI8.873e-1440.63ABC transporter A family member 9 OS=Dictyostelium... [more]
CED7_CAEEL4.404e-1338.24ABC transporter ced-7 OS=Caenorhabditis elegans GN... [more]
ABCA6_DICDI4.404e-1340.00ABC transporter A family member 6 OS=Dictyostelium... [more]
ABCA7_DICDI6.359e-1241.86ABC transporter A family member 7 OS=Dictyostelium... [more]
NODI_RHIEC3.156e-1147.22Nod factor export ATP-binding protein I OS=Rhizobi... [more]

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Properties
Property NameValue
Genbank descriptionC05075B03SK DroRLeaf1 Citrus clementina cDNA clone C05075B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295713 ID=CX295713; Name=CX295713; organism=Citrus clementina; type=EST; length=737bp
GATTCGGCCGAGGCCTCGTGCCGAATCGGCACGAGGGGAGATCCTCCAAT
TGTTATTCTTGATGAGCCATCAACAGGCATGGATCCAATTGCTAAACGAT
TCATGTGGGAAGTGATATCTCGTTTATCAACTAGACAAGGGAAGACAGCA
GTTATCCTTACAACCCACAGCATGAATGAAGCTCAAGCATTATGCACCAG
AATTGGAATAATGGTTGGCGGCCAGCTTAGATGTATTGGAAGTCCCCAGC
ATTTAAAAACACGGTTTGGGAATTTTCTTGAGCTAGAGGTTAAACCTACT
GAGGTTAGCTCGGTAGATTTGGAAGACCTTTGCCAGATTATTCAAGAAAG
AGTATTTGACATTCCTTCTCAGCGAAGGAGCTTGTTAGATGACCTTGAAG
TTTGCATTGGTGGTATTGACTCCATTTCATCAGAAAATGCAACGGCGGCA
GAAATTAGCTTGTCACAGGAAATGTTACTTATAGTTGGGCGCTGGCTTGG
CAATGAAGAAAGAATAAAAACACTTATAAGTTCCTCCTCTTCTCCTGATA
GAATATTTGGGGAACAATTGTCTGAGCAGTTGGTTCGAGATGGGGGTATA
CAATTGCCGATATTCTCCGAGTGGTGGTTGGCCAAAGAAAAGTTTGCGGT
GATTGATTCTTTCATTTTATCTTCATTTCCTGGCTCAACATTTCAGGGGT
GCAACGGGTTGAGTGTCAATATCAGCTACATTCTCGG
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