CX295719

Overview
NameCX295719
Unique NameCX295719
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length741
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295719 vs. ExPASy Swiss-Prot
Match: MYR2_SINAL (Myrosinase MB2 (Fragment) OS=Sinapis alba PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.084e-11
Identity = 29/60 (48.33%), Postives = 41/60 (68.33%), Query Frame = 2
Query:  464 DFFLGMYMDPLIYGNYPFIMRTLVRERLPKFANEQSVMLKGSFDFIGMNYYSSNYAVDIP 643
            +FF G YM+PL  G YP IMR +V  RLP F  +++ ++ GS+DF+G+NYY + YA   P
Sbjct:    1 EFFHGWYMEPLTKGRYPDIMRQIVGTRLPNFTEDEAELVAGSYDFLGLNYYVTQYAKPKP 60          
BLAST of CX295719 vs. ExPASy Swiss-Prot
Match: LACG_STRS7 (6-phospho-beta-galactosidase OS=Streptococcus equi subsp. zooepidemicus (strain H70) GN=lacG PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.084e-11
Identity = 63/212 (29.72%), Postives = 89/212 (41.98%), Query Frame = 2
Query:   23 LQPFVTIFHWDLPQALEDDYGGFLSPRIVADFQDYAELCFKEFGDRVKHWITLNEPHSYSSNGYNKGTDAPGRCSKWVNKACQAGNSSTEPYIVGHHQLLSHAAAVKVYKEKYQAIQKGKIGITLISDWMVPYSNEKPNVEAADRALDF----------FLGMYMDPLIYGNYPFIMRTLVRERLPKFANEQSVMLKGSFDFIGMNYYSSNY 628
            ++PFVT+ H+D P+AL    G FL+   +  F  YA  CFKEF + V +W T NE        Y  G   PG  S  + K  Q+           H+ +L+HA A+  YKE+      G+IGI        P   +KP    A    D           +LG Y +  + G    +        L     E     K   DF+G+NYY S++
Sbjct:  108 VEPFVTLHHFDTPEALH-SRGDFLNRENIDHFVAYAAYCFKEFPE-VTYWTTFNEIGPIGDGQYLVGKFPPG-ISYDLAKVFQS----------HHNMMLAHARALVHYKEQ---AYPGEIGIVHALPTKYPLDPKKPGDVLAAELDDIIHNKFILDATYLGQYSEKTMAGVKHILAENGGSLDLRPEDFELLQAAKDLNDFLGINYYMSDW 303          
The following BLAST results are available for this feature:
BLAST of CX295719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 172
Match NameE-valueIdentityDescription
MYR2_SINAL7.084e-1148.33Myrosinase MB2 (Fragment) OS=Sinapis alba PE=1 SV=... [more]
LACG_STRS77.084e-1129.726-phospho-beta-galactosidase OS=Streptococcus equi... [more]

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Properties
Property NameValue
Genbank descriptionC05075B09SK DroRLeaf1 Citrus clementina cDNA clone C05075B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295719 ID=CX295719; Name=CX295719; organism=Citrus clementina; type=EST; length=741bp
GAGGCGAGCTCCTCTCAATGGATTGCAACCCTTTGTTACTATCTTTCACT
GGGATCTTCCACAGGCCCTGGAAGATGACTATGGTGGCTTTTTAAGCCCT
CGCATTGTGGCTGATTTTCAAGACTATGCGGAGCTTTGCTTCAAAGAATT
TGGTGATCGCGTAAAGCATTGGATCACTTTAAATGAGCCACATTCATACA
GTAGTAATGGCTATAATAAGGGTACCGATGCACCAGGACGGTGTTCCAAA
TGGGTAAACAAAGCATGCCAGGCTGGGAACTCTTCCACAGAGCCTTATAT
TGTTGGCCATCATCAGCTACTTTCTCATGCAGCAGCTGTAAAAGTTTACA
AGGAAAAATACCAAGCAATTCAAAAGGGCAAGATTGGAATAACATTAATT
TCAGATTGGATGGTACCCTATTCCAATGAAAAACCTAATGTTGAGGCTGC
TGACAGAGCCCTTGATTTCTTTCTTGGAATGTATATGGATCCACTGATAT
ACGGGAATTATCCGTTCATCATGCGCACACTTGTGAGAGAAAGACTGCCA
AAATTCGCTAATGAACAATCTGTGATGCTCAAAGGATCTTTTGATTTTAT
TGGAATGAATTATTACAGTTCAAATTATGCAGTTGATATTCCTGTTGCCA
ATTCCATAAATATTAGCTATTCAACAGATTCTCAAGCTAATTTGACTGCT
GTGCGCAATGGGGAAACTTATGGTCCAAGGCTGCGTCAACT
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