CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SALHS (Triosephosphate isomerase OS=Salmonella heidelberg (strain SL476) GN=tpiA PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.763e-41
Identity = 95/191 (49.74%), Postives = 121/191 (63.35%), Query Frame = 3 
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 665
            + AQN  +   GAFTGE SAEML ++   ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATP QAQ VH  +R  + A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:   61 LGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250
[Close]
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SALG2 (Triosephosphate isomerase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=tpiA PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.763e-41
Identity = 95/191 (49.74%), Postives = 121/191 (63.35%), Query Frame = 3 
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 665
            + AQN  +   GAFTGE SAEML ++   ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATP QAQ VH  +R  + A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:   61 LGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250
[Close]
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SALEP (Triosephosphate isomerase OS=Salmonella enteritidis PT4 (strain P125109) GN=tpiA PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.763e-41
Identity = 95/191 (49.74%), Postives = 121/191 (63.35%), Query Frame = 3 
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 665
            + AQN  +   GAFTGE SAEML ++   ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATP QAQ VH  +R  + A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:   61 LGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250
[Close]
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SALDC (Triosephosphate isomerase OS=Salmonella dublin (strain CT_02021853) GN=tpiA PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.763e-41
Identity = 95/191 (49.74%), Postives = 121/191 (63.35%), Query Frame = 3 
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 665
            + AQN  +   GAFTGE SAEML ++   ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATP QAQ VH  +R  + A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:   61 LGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250
[Close]
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SALCH (Triosephosphate isomerase OS=Salmonella choleraesuis GN=tpiA PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.763e-41
Identity = 95/191 (49.74%), Postives = 121/191 (63.35%), Query Frame = 3 
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 665
            + AQN  +   GAFTGE SAEML ++   ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATP QAQ VH  +R  + A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:   61 LGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250
[Close]
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SALA4 (Triosephosphate isomerase OS=Salmonella agona (strain SL483) GN=tpiA PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.763e-41
Identity = 95/191 (49.74%), Postives = 121/191 (63.35%), Query Frame = 3 
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 665
            + AQN  +   GAFTGE SAEML ++   ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      +++   V+AYEPVWAIGTGK ATP QAQ VH  +R  + A    +IA    I YGGSVN +N  EL AQPD+DG LVGGASLK + F  I+K+AE
Sbjct:   61 LGAQNVDLNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAE 250
[Close]
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_FUSNN (Triosephosphate isomerase OS=Fusobacterium nucleatum subsp. nucleatum GN=tpiA PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.763e-41
Identity = 92/189 (48.68%), Postives = 122/189 (64.55%), Query Frame = 3 
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTK-AIAD-RVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKS 659
            +AA+N + K  GA+TGE+S +ML ++ + +VILGHSERR    ES+EF+  KV   L  G+K I C+GE LE RE G T++V+A Q K  + D         ++AYEPVWAIGTGK ATP  AQE H E+R  L      ++A    I YGGS+   N K+L +Q D+DG LVGGASLK + F +IIK+
Sbjct:   61 IAAENVYPKIEGAYTGEVSPKMLKDIGVTYVILGHSERREYFKESDEFINQKVKAVLEIGMKPILCIGEKLEDREGGKTLEVLAKQIKEGLVDLSKEDAEKTIVAYEPVWAIGTGKTATPEMAQETHKEIRNVLAEMFGKDVADKMIIQYGGSMKPENAKDLLSQEDIDGGLVGGASLKADSFFEIIKA 249
[Close]
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CHLTE (Triosephosphate isomerase OS=Chlorobium tepidum GN=tpiA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.221e-41
Identity = 94/188 (50.00%), Postives = 119/188 (63.30%), Query Frame = 3 
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            + AQNC  +  G FTGE+S  ML      +VILGHSERR +  E+N  V  KV  AL++GL VI CVGETL++RE G T  +V AQ       V+  S +V+AYEPVWAIGTGK AT  QAQEVH  +R  +      + A   RI YGGSV  +N  EL A PD+DG L+GGASL   +F+ I+++A
Sbjct:   57 LCAQNCHYESDGPFTGEVSTRMLAAAGCSYVILGHSERRQLFGETNATVNLKVKKALAEGLSVILCVGETLDERERGVTGQIVTAQVVEGLIDVTDISKLVIAYEPVWAIGTGKTATKEQAQEVHALIRAKVTELYGQKAADHLRIQYGGSVKPSNAAELFAMPDIDGGLIGGASLNADDFMAIVEAA 244
[Close]
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPB (Triosephosphate isomerase OS=Chlorobium phaeobacteroides (strain BS1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.221e-41
Identity = 90/191 (47.12%), Postives = 119/191 (62.30%), Query Frame = 3 
Query:   93 DFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            D  + AQNC  +  GA+TGE+S  ML +L   ++I+GHSERR    E+N  V  ++  AL  G++VI C+GETLE+REAG T  +V AQ +     +    N+VLAYEPVWAIGTGK ATP QA  VH  +R  +        A   RI YGGSV  +N  EL   P++DG L+GGASLK  +F+ I+ +A
Sbjct:   59 DICLVAQNCHYEDEGAYTGEVSVRMLDSLGCSYIIVGHSERRQYFGETNRTVNLRLKKALEGGMRVILCIGETLEEREAGVTDAIVTAQVREGLADIEDLGNVVLAYEPVWAIGTGKTATPEQADAVHASIRATISDMYGEADAEDIRIQYGGSVKPSNAVELFGMPNIDGGLIGGASLKADDFVAIVNAA 249
[Close]
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_BACC1 (Triosephosphate isomerase OS=Bacillus cereus (strain ATCC 10987) GN=tpiA PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 6.221e-41
Identity = 97/202 (48.02%), Postives = 125/202 (61.88%), Query Frame = 3 
Query:   69 LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKSAE 665
            LV ++   D  V AQN   +K GAFTGEIS   L +L + +V+LGHSERR +  E++E V  K   A   GL  I C GETLE+RE+G T D+VA Q TKA+A          V+AYEP+WAIGTGK ++   A EV   +RK +    SP  A A RI YGGSV   N KE  AQ D+DG LVGGASL+P  F+ ++++ +
Sbjct:   50 LVAATEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTIAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPAAAEAVRIQYGGSVKPENIKEYMAQSDIDGALVGGASLEPASFLGLLEAVK 251
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_SALHS4.763e-4149.74Triosephosphate isomerase OS=Salmonella heidelberg... [more]
TPIS_SALG24.763e-4149.74Triosephosphate isomerase OS=Salmonella gallinarum... [more]
TPIS_SALEP4.763e-4149.74Triosephosphate isomerase OS=Salmonella enteritidi... [more]
TPIS_SALDC4.763e-4149.74Triosephosphate isomerase OS=Salmonella dublin (st... [more]
TPIS_SALCH4.763e-4149.74Triosephosphate isomerase OS=Salmonella choleraesu... [more]
TPIS_SALA44.763e-4149.74Triosephosphate isomerase OS=Salmonella agona (str... [more]
TPIS_FUSNN4.763e-4148.68Triosephosphate isomerase OS=Fusobacterium nucleat... [more]
TPIS_CHLTE6.221e-4150.00Triosephosphate isomerase OS=Chlorobium tepidum GN... [more]
TPIS_CHLPB6.221e-4147.12Triosephosphate isomerase OS=Chlorobium phaeobacte... [more]
TPIS_BACC16.221e-4148.02Triosephosphate isomerase OS=Bacillus cereus (stra... [more]

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Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
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