CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CHLTR (Triosephosphate isomerase OS=Chlamydia trachomatis GN=tpiA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.032e-40
Identity = 86/190 (45.26%), Postives = 122/190 (64.21%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAEL 668
            + AQ       GAFTGEISA ML ++ + +V++GHSERR I +E N  + +K A A+  G+  + C+GETLE++E+G+T D++  Q      ++   ++ +LAYEPVWAIGTGKVA P   QE H   RK + +  S +IA  T I+YGGSV   N + L+  PDV+G LVGGASL  E F+ II+  ++
Sbjct:   84 LGAQTTHEADSGAFTGEISAPMLKDIGVDFVLIGHSERRHIFHEQNPVLAEKAAAAIHSGMIPVLCIGETLEEQESGATQDILLNQLTTGLSKLPEQASFILAYEPVWAIGTGKVAHPDLVQETHAFCRKTIASLFSKDIAERTPILYGGSVKADNARSLSLCPDVNGLLVGGASLSSENFLSIIQQIDI 273          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_ACIAC (Triosephosphate isomerase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.032e-40
Identity = 99/201 (49.25%), Postives = 128/201 (63.68%), Query Frame = 3
Query:   66 GLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            GLV+ S      +AAQ+    + GA+TGE+SA ML    + +V++GHSERR    E++E V +K   AL+ G+  + CVGETL +REAG T  VV  Q  A+        S  V+AYEPVWAIGTG+ ATP QAQ+VH  LR  L A  + E A   R++YGGS+N AN   L AQPD+DG LVGGASLK  +F+ II +A
Sbjct:   55 GLVEGSA---IALAAQDVSRHEAGAYTGEVSAAMLQEFGVRYVLVGHSERRQYHGETDEQVAEKAQRALAAGITPVVCVGETLAEREAGQTEAVVKRQLAAVIHLNGHCISETVVAYEPVWAIGTGRTATPEQAQQVHAVLRAQLAA--ASEHADRIRLLYGGSMNAANAAALLAQPDIDGGLVGGASLKAQDFLQIIAAA 250          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CHRSD (Triosephosphate isomerase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=tpiA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.266e-40
Identity = 93/179 (51.96%), Postives = 122/179 (68.16%), Query Frame = 3
Query:  135 GAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQT-KAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            GA TGE+S  ML   D+ +V++GHSERR +  ES++ V D++  AL+  L+ I CVGETLE R+AG T DVV  Q   A+A    +  + + +AYEPVWAIGTG+ ATP QAQEV   +R++  A   P +A + R+IYGGS+N AN  EL AQPD+DG LVGGASLK  +F+ I  SA
Sbjct:   71 GARTGEVSGRMLKEFDVEYVLVGHSERRELYRESDDDVYDRLLAALNADLRPILCVGETLEARDAGRTRDVVLRQVGHALAPLEPAQRARVTIAYEPVWAIGTGRTATPEQAQEVMAAIREYQ-AGFDPALAQSMRLIYGGSMNAANAAELLAQPDIDGGLVGGASLKVDDFLAICHSA 248          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CHLTB (Triosephosphate isomerase OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=tpiA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.266e-40
Identity = 86/190 (45.26%), Postives = 122/190 (64.21%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAEL 668
            + AQ       GAFTGEISA ML ++ + +V++GHSERR I +E N  + +K A A+  G+  + C+GETLE++E+G+T D++  Q      ++   ++ +LAYEPVWAIGTGKVA P   QE H   RK + +  S +IA  T I+YGGSV   N + L+  PDV+G LVGGASL  E F+ II+  ++
Sbjct:   84 LGAQTTHEADSGAFTGEISAPMLKDIGVDFVLIGHSERRHIFHEQNPVLAEKAAAAIHSGMIPVLCIGETLEEQESGATQDILLNQLTIGLSKLPEQASFILAYEPVWAIGTGKVAHPDLVQETHAFCRKTIASLFSKDIAERTPILYGGSVKADNARSLSLCPDVNGLLVGGASLSSENFLSIIQQIDI 273          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CHLT2 (Triosephosphate isomerase OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=tpiA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.266e-40
Identity = 86/190 (45.26%), Postives = 122/190 (64.21%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAEL 668
            + AQ       GAFTGEISA ML ++ + +V++GHSERR I +E N  + +K A A+  G+  + C+GETLE++E+G+T D++  Q      ++   ++ +LAYEPVWAIGTGKVA P   QE H   RK + +  S +IA  T I+YGGSV   N + L+  PDV+G LVGGASL  E F+ II+  ++
Sbjct:   84 LGAQTTHEADSGAFTGEISAPMLKDIGVDFVLIGHSERRHIFHEQNPVLAEKAAAAIHSGMIPVLCIGETLEEQESGATQDILLNQLTIGLSKLPEQASFILAYEPVWAIGTGKVAHPDLVQETHAFCRKTIASLFSKDIAERTPILYGGSVKADNARSLSLCPDVNGLLVGGASLSSENFLSIIQQIDI 273          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_ACTPJ (Triosephosphate isomerase OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=tpiA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.266e-40
Identity = 95/191 (49.74%), Postives = 119/191 (62.30%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAE 665
            + AQN  V   GAFTG+IS EML +    ++I+GHSERR    E + F+  K A   + GL  + C+GET  + EAG T  V A Q  A+ D   V +++  V+AYEP+WAIGTGK ATP QAQ VH  +R  + A  S  +A    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+AE
Sbjct:   63 LGAQNVDVNVQGAFTGDISTEMLKDFGAKYIIIGHSERRTYHKECDTFIAKKFAALKAAGLVPVLCIGETEAENEAGQTEAVCAKQIDAVIDALGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAK-SQAVADQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAE 252          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_ACTP7 (Triosephosphate isomerase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=tpiA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.266e-40
Identity = 95/191 (49.74%), Postives = 119/191 (62.30%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAE 665
            + AQN  V   GAFTG+IS EML +    ++I+GHSERR    E + F+  K A   + GL  + C+GET  + EAG T  V A Q  A+ D   V +++  V+AYEP+WAIGTGK ATP QAQ VH  +R  + A  S  +A    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+AE
Sbjct:   63 LGAQNVDVNVQGAFTGDISTEMLKDFGAKYIIIGHSERRTYHKECDTFIAKKFAALKAAGLVPVLCIGETEAENEAGQTEAVCAKQIDAVIDALGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAK-SQAVADQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAE 252          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_ACTP2 (Triosephosphate isomerase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=tpiA PE=3 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 5.266e-40
Identity = 95/191 (49.74%), Postives = 119/191 (62.30%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAE 665
            + AQN  V   GAFTG+IS EML +    ++I+GHSERR    E + F+  K A   + GL  + C+GET  + EAG T  V A Q  A+ D   V +++  V+AYEP+WAIGTGK ATP QAQ VH  +R  + A  S  +A    I YGGSVN AN  EL  QPD+DG LVGGASLK P F  I+K+AE
Sbjct:   63 LGAQNVDVNVQGAFTGDISTEMLKDFGAKYIIIGHSERRTYHKECDTFIAKKFAALKAAGLVPVLCIGETEAENEAGQTEAVCAKQIDAVIDALGVEAFNGAVIAYEPIWAIGTGKSATPAQAQAVHAFIRGHIAAK-SQAVADQVIIQYGGSVNDANAAELFTQPDIDGALVGGASLKAPAFAVIVKAAE 252          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_PSYIN (Triosephosphate isomerase OS=Psychromonas ingrahamii (strain 37) GN=tpiA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.878e-40
Identity = 91/191 (47.64%), Postives = 121/191 (63.35%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGAS-LKPEFIDIIKSAE 665
            + AQ+      GAFTGE S  M+      + ++GHSERR   NE++  V  K     + GL  + C+GETLE+RE   T +VV  Q KA+ D   + +  N V+AYEPVWAIGTGKVA+  QAQ+VH  +R WL A  S  +AA  +I+YGGSV  ++ KEL AQPD+DG LVGGA+ L  EF+ II+ A+
Sbjct:   61 LGAQDVSTNISGAFTGETSPVMVKEFGAKYSLVGHSERRQYHNETDAVVAAKFVAIQANGLVPVLCIGETLEERETDKTFNVVETQLKAVIDVSGIDALENAVIAYEPVWAIGTGKVASSEQAQDVHAHIRTWL-AEQSKVVAAKVQILYGGSVKASSAKELFAQPDIDGGLVGGAALLVEEFVGIIEGAK 250          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_NITEC (Triosephosphate isomerase OS=Nitrosomonas eutropha (strain C91) GN=tpiA PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.878e-40
Identity = 98/194 (50.52%), Postives = 122/194 (62.89%), Query Frame = 3
Query:   99 HVA--AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSAE 665
            HVA   QN      GA+TGE+SA ML +    +VI+GHSERR +  E N+ V +K   A  Q L  I CVGETL QREA  T  V+A Q  A+     V++    V+AYEPVWAIGTG+ ATP QAQ+VH  +R  + A+ S EIAA  +I+YGGSV   N  EL A PD+DG L+GGASL   EFI I  +A+
Sbjct:   59 HVAWGGQNISQHHQGAYTGEVSAGMLTDFGCRYVIVGHSERRTLYGEDNQMVAEKFHSAQEQSLVPILCVGETLAQREANETEQVIARQLDAVIGLVGVNAIKQSVIAYEPVWAIGTGETATPQQAQDVHAFVRNRIAAHNS-EIAADIQIVYGGSVKANNASELFAMPDIDGGLIGGASLVAAEFISICFAAQ 251          
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_CHLTR4.032e-4045.26Triosephosphate isomerase OS=Chlamydia trachomatis... [more]
TPIS_ACIAC4.032e-4049.25Triosephosphate isomerase OS=Acidovorax avenae sub... [more]
TPIS_CHRSD5.266e-4051.96Triosephosphate isomerase OS=Chromohalobacter sale... [more]
TPIS_CHLTB5.266e-4045.26Triosephosphate isomerase OS=Chlamydia trachomatis... [more]
TPIS_CHLT25.266e-4045.26Triosephosphate isomerase OS=Chlamydia trachomatis... [more]
TPIS_ACTPJ5.266e-4049.74Triosephosphate isomerase OS=Actinobacillus pleuro... [more]
TPIS_ACTP75.266e-4049.74Triosephosphate isomerase OS=Actinobacillus pleuro... [more]
TPIS_ACTP25.266e-4049.74Triosephosphate isomerase OS=Actinobacillus pleuro... [more]
TPIS_PSYIN6.878e-4047.64Triosephosphate isomerase OS=Psychromonas ingraham... [more]
TPIS_NITEC6.878e-4050.52Triosephosphate isomerase OS=Nitrosomonas eutropha... [more]

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Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
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