CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_PIG (Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE=2 SV=4)

HSP 1 Score: 249.21 bits (635), Expect = 1.626e-65
Identity = 122/200 (61.00%), Postives = 147/200 (73.50%), Query Frame = 3
Query:   60 FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 659
            ++   +  L P   VAAQNC+    GAFTGEI   M+ +L   WV+LGHSERR +  ES+E +G KVA+AL++GL VIAC+GE L++REAG T  VV  QTK IAD V  W+ +VLAYEPVWAIGTGK ATP QAQEVH +LR WL  +    +A +TRIIYGGSV GA CKELA+QPDVDGF V GASLKPEF+DII +
Sbjct:   48 YIDFARQKLDPKIAVAAQNCYKVANGAFTGEIGPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDWNKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKTHVPEAVAHSTRIIYGGSVTGATCKELASQPDVDGFRVSGASLKPEFVDIINA 247          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_XENLA (Triosephosphate isomerase OS=Xenopus laevis GN=tpi1 PE=2 SV=1)

HSP 1 Score: 248.44 bits (633), Expect = 2.773e-65
Identity = 122/200 (61.00%), Postives = 147/200 (73.50%), Query Frame = 3
Query:   60 FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 659
            +L   +  L     ++AQNC+    GAFTGEIS  M+ +    WVILGHSERR +  E +E +G KVA+ALS+G+ VIAC+GE L+QREAG T  VV  QTKAIAD V  WS +VLAYEPVWAIGTGK ATP QAQEVH +LR+W+  N S  +A + RIIYGGSV G  C+ELA QPD+DGFLVGGASLKPEFI+II +
Sbjct:   47 YLDFARQKLDAKIALSAQNCYKVAKGAFTGEISPAMIKDCGATWVILGHSERRHVFGECDELIGQKVAHALSEGIGVIACIGEKLDQREAGITEKVVFEQTKAIADNVKDWSKVVLAYEPVWAIGTGKTATPEQAQEVHKKLREWVKTNVSEGVAQSVRIIYGGSVTGGTCRELAGQPDIDGFLVGGASLKPEFIEIINA 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_LATCH (Triosephosphate isomerase OS=Latimeria chalumnae PE=1 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.054e-64
Identity = 119/196 (60.71%), Postives = 148/196 (75.51%), Query Frame = 3
Query:   60 FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFID 647
            +L   +  + P F VAAQNC+    GAFTGEIS  M+ +  + WVILGHSERR +  ES+E +G KV++ALS+GL V+AC+GE L++REAG T  VV   T+ IAD V  WS +VLAYEPVWAIGTGK A+P Q+QE+H +LRKWL  N S  +A + RIIYGGSV GA CKELA++PDVDGFLVGGASLKPEF++
Sbjct:   46 YLDFARLKVDPKFGVAAQNCYKVSKGAFTGEISPAMIKDCGVTWVILGHSERRHVFGESDELIGQKVSHALSEGLGVVACIGEKLDEREAGITEGVVFEVTEVIADDVKDWSKVVLAYEPVWAIGTGKTASPQQSQELHGKLRKWLKENVSETVADSVRIIYGGSVTGATCKELASEPDVDGFLVGGASLKPEFVE 241          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SCHJA (Triosephosphate isomerase OS=Schistosoma japonicum GN=TPI PE=2 SV=1)

HSP 1 Score: 246.128 bits (627), Expect = 1.376e-64
Identity = 124/205 (60.49%), Postives = 150/205 (73.17%), Query Frame = 3
Query:   60 FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS---WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 665
            +L  V+ SL  + HVAAQNC+    GAFTGEIS  M+ ++   WVILGHSERR I NES+E V +KV +AL++GL V+AC+GETL +RE+G T +V   Q  AIA+++ S   W  +V+AYEPVWAIGTGKVA+P QAQEVH  LRKW   NT   +    RIIYGGSV  ANCKELA Q DVDGFLVGGASLKPEFIDI K+ +
Sbjct:   48 YLNEVRQSLAKEIHVAAQNCYKVPKGAFTGEISPSMIKDVGCDWVILGHSERRSIFNESDELVAEKVQHALAEGLSVVACIGETLSERESGKTEEVCVRQLNAIANKIKSIDEWKRVVVAYEPVWAIGTGKVASPGQAQEVHNFLRKWFKTNTPSGVDQQIRIIYGGSVTAANCKELAQQHDVDGFLVGGASLKPEFIDICKARQ 252          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_BOMMO (Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE=1 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 4.004e-64
Identity = 121/201 (60.20%), Postives = 147/201 (73.13%), Query Frame = 3
Query:   60 FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS-WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 659
            +L  VK+ +  +  VAAQNCW    GAFTGEIS  M+ ++ + WVILGHSERR I  E +E V +KVA+AL  GLKVIAC+GETLE+RE+G T +VV  Q KA+   +   W NIVLAYEPVWAIGTGK ATP QAQ+VH  LR WL AN S  ++ A RI YGGSV  AN KELA+  D+DGFLVGGASLKPEF++I+ +
Sbjct:   46 YLSYVKTIIPDNVEVAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESGLKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLAYEPVWAIGTGKTATPQQAQDVHHALRNWLSANVSGSVSDAVRIQYGGSVTAANAKELASCKDIDGFLVGGASLKPEFVEIVNA 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SCHMA (Triosephosphate isomerase OS=Schistosoma mansoni GN=TPI PE=1 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.552e-63
Identity = 121/205 (59.02%), Postives = 148/205 (72.20%), Query Frame = 3
Query:   60 FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS---WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 665
            FL  ++ SL+ + HVAAQNC+    GAFTGEIS  M+ ++   WVILGHSERR I  ES+E + +KV +AL++GL VIAC+GETL +RE+  T +V   Q KAIA+++ S   W  +V+AYEPVWAIGTGKVATP QAQEVH  LRKW   N    +    RIIYGGSV  ANCKELA Q DVDGFLVGGASLKPEF +I K+ +
Sbjct:   48 FLHEIRKSLKKEIHVAAQNCYKVSKGAFTGEISPAMIRDIGCDWVILGHSERRNIFGESDELIAEKVQHALAEGLSVIACIGETLSERESNKTEEVCVRQLKAIANKIKSADEWKRVVVAYEPVWAIGTGKVATPQQAQEVHNFLRKWFKTNAPNGVDEKIRIIYGGSVTAANCKELAQQHDVDGFLVGGASLKPEFTEICKARQ 252          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_DROYA (Triosephosphate isomerase OS=Drosophila yakuba GN=Tpi PE=2 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.870e-62
Identity = 118/202 (58.42%), Postives = 148/202 (73.27%), Query Frame = 3
Query:   60 FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 665
            +L   ++ L  +  +A QN +    GAFTGEIS  ML ++   WVILGHSERR I  ES+  + +K  +AL++GLKVIAC+GETLE+REAG T +VVA Q  A A ++  W N+V+AYEPVWAIGTGK ATP QAQEVH  LR+WL  N S E++A+ RI YGGSV  AN KELA +PD+DGFLVGGASLKPEF+DII + +
Sbjct:   46 YLMYARNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGKTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLKPEFVDIINARQ 247          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_DROSI (Triosephosphate isomerase OS=Drosophila simulans GN=Tpi PE=3 SV=1)

HSP 1 Score: 238.424 bits (607), Expect = 2.870e-62
Identity = 118/202 (58.42%), Postives = 148/202 (73.27%), Query Frame = 3
Query:   60 FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 665
            +L   ++ L  +  +A QN +    GAFTGEIS  ML ++   WVILGHSERR I  ES+  + +K  +AL++GLKVIAC+GETLE+REAG T +VVA Q  A A ++  W N+V+AYEPVWAIGTGK ATP QAQEVH  LR+WL  N S E++A+ RI YGGSV  AN KELA +PD+DGFLVGGASLKPEF+DII + +
Sbjct:   46 YLMYARNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGKTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLKPEFVDIINARQ 247          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_GRAVE (Triosephosphate isomerase, cytosolic (Fragment) OS=Gracilaria verrucosa GN=TPI1 PE=3 SV=1)

HSP 1 Score: 237.654 bits (605), Expect = 4.895e-62
Identity = 115/203 (56.65%), Postives = 152/203 (74.88%), Query Frame = 3
Query:   60 FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLI--LNESNEFVGDKVAYALSQG-LKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKS 659
            +L   + +LR DF  +AQN W+ KGGAFTGE+ A M+ ++   WVILGHSERR I  L ES+  +  K AYAL    L VI C+GE LE+RE+G T+ V   Q +A++D +S WS++V+AYEPVWAIGTGKVATP QA++VH  +R WL  N SP++AA+TRI+YGGSV+ ANC+ LA QP++DGFLVGGAS+KP F++I+ S
Sbjct:   39 YLDSTRQALRADFDTSAQNAWISKGGAFTGELDAAMVKDVGAEWVILGHSERRHIAQLKESDHTIAMKAAYALQHASLGVIYCIGELLEERESGQTIAVCERQLQALSDAISDWSDVVIAYEPVWAIGTGKVATPEQAEQVHEAVRAWLANNVSPQVAASTRILYGGSVSPANCESLAKQPNIDGFLVGGASMKPTFLEIVDS 241          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_DROME (Triosephosphate isomerase OS=Drosophila melanogaster GN=Tpi PE=1 SV=3)

HSP 1 Score: 236.884 bits (603), Expect = 8.350e-62
Identity = 117/202 (57.92%), Postives = 148/202 (73.27%), Query Frame = 3
Query:   60 FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSAE 665
            +L   ++ L  +  +A QN +    GAFTGEIS  ML ++   WVILGHSERR I  ES+  + +K  +AL++GLKVIAC+GETLE+REAG T +VVA Q  A A ++  W N+V+AYEPVWAIGTG+ ATP QAQEVH  LR+WL  N S E++A+ RI YGGSV  AN KELA +PD+DGFLVGGASLKPEF+DII + +
Sbjct:   46 YLMYARNLLPCELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIKDWKNVVVAYEPVWAIGTGQTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLKPEFVDIINARQ 247          
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PIG1.626e-6561.00Triosephosphate isomerase OS=Sus scrofa GN=TPI1 PE... [more]
TPIS_XENLA2.773e-6561.00Triosephosphate isomerase OS=Xenopus laevis GN=tpi... [more]
TPIS_LATCH1.054e-6460.71Triosephosphate isomerase OS=Latimeria chalumnae P... [more]
TPIS_SCHJA1.376e-6460.49Triosephosphate isomerase OS=Schistosoma japonicum... [more]
TPIS_BOMMO4.004e-6460.20Triosephosphate isomerase OS=Bombyx mori GN=Tpi PE... [more]
TPIS_SCHMA7.552e-6359.02Triosephosphate isomerase OS=Schistosoma mansoni G... [more]
TPIS_DROYA2.870e-6258.42Triosephosphate isomerase OS=Drosophila yakuba GN=... [more]
TPIS_DROSI2.870e-6258.42Triosephosphate isomerase OS=Drosophila simulans G... [more]
TPIS_GRAVE4.895e-6256.65Triosephosphate isomerase, cytosolic (Fragment) OS... [more]
TPIS_DROME8.350e-6257.92Triosephosphate isomerase OS=Drosophila melanogast... [more]

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Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
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