CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_FINM2 (Triosephosphate isomerase OS=Finegoldia magna (strain ATCC 29328) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.101e-35
Identity = 81/180 (45.00%), Postives = 113/180 (62.78%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS---WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            AQN + ++ GAFTGE+S  ML +L I +VI+GHSERR I  E +E +  K+A AL   +K I C GE LEQRE+    +VV +Q +     ++     S +V+AYEP+WAIGTGK A+   AQ +   +R  L    S ++A + RI YGGSV   N  ++ ++ D+DG LVGGASL+ E
Sbjct:   62 AQNMYYEECGAFTGEVSPNMLKDLGIDYVIIGHSERRTIFKEDDELLNKKIASALKHDIKPILCCGENLEQRESNRHEEVVESQIRLDLKGINEKDIMSKLVIAYEPIWAIGTGKTASSDDAQSMCKFIRNLLSKMYSKDLADSVRIQYGGSVKPENILDIMSKEDIDGALVGGASLEAE 241          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CHLCV (Triosephosphate isomerase OS=Chlamydophila caviae GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.101e-35
Identity = 82/190 (43.16%), Postives = 114/190 (60.00%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAEL 668
            + AQN      GAFTGE+S  ML    + +V+LGHSE R I +E +  +  KV  A   G+  + C+GETLE RE G+T +V++ Q      ++   + +++AYEPVWAIGTGKVA+    QEVH   R+ L    S E +    I+YGGSV   N +  A  PDVDG LVGGASL P+ F +++++  L
Sbjct:   65 LGAQNVHQDSSGAFTGEVSLPMLQEFHVNFVLLGHSECRHIFHEEDATIALKVGAAARSGVVPVLCIGETLEARENGTTKEVLSNQLMLGLAQLPETAPVIIAYEPVWAIGTGKVASTADVQEVHAFCREVLSRIFSKEKSEIISILYGGSVKADNAEGFARCPDVDGLLVGGASLDPQGFANVLRNFNL 254          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS1_LISMF (Triosephosphate isomerase 1 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.101e-35
Identity = 86/202 (42.57%), Postives = 120/202 (59.41%), Query Frame = 3
Query:   69 LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNI--VLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKSAE 665
            LV+ +   +  VAAQNC+ +  GAFTGEIS   L +L + +VI+GHSERR   +E++E +  K       G+  I C GETL+QREAG T   V  Q +A    ++    I  V+AYEP+WAIGTGK +T   A E    +R  +    S + A A RI YGGSV   N  +  A+ D+DG LVGGASL+P  F+ ++++ +
Sbjct:   50 LVRLTEGTNLRVAAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFLALLEAVK 251          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS1_LISIN (Triosephosphate isomerase 1 OS=Listeria innocua GN=tpiA1 PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.101e-35
Identity = 86/202 (42.57%), Postives = 120/202 (59.41%), Query Frame = 3
Query:   69 LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNI--VLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKSAE 665
            LV+ +   +  VAAQNC+ +  GAFTGEIS   L +L + +VI+GHSERR   +E++E +  K       G+  I C GETL+QREAG T   V  Q +A    ++    I  V+AYEP+WAIGTGK +T   A E    +R  +    S + A A RI YGGSV   N  +  A+ D+DG LVGGASL+P  F+ ++++ +
Sbjct:   50 LVRLTEGTNLRVAAQNCYFEDEGAFTGEISPFALADLGVSYVIIGHSERREYFHETDEDINKKAHAIFKHGMTPIICCGETLDQREAGQTDTWVRGQIRAALAGLTEEQVIKSVIAYEPIWAIGTGKSSTSADANETCAVIRAEVADAVSQKAADAVRIQYGGSVKPENIADYLAESDIDGALVGGASLEPASFLALLEAVK 251          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_BACSK (Triosephosphate isomerase OS=Bacillus clausii (strain KSM-K16) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.662e-35
Identity = 87/194 (44.85%), Postives = 117/194 (60.31%), Query Frame = 3
Query:   93 DFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWS--NIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 665
            +  + AQ    +  GAFTGEIS + L ++ + +VI+GHSERR +  E++E V  KV  A +  L  I C GET E+REAG    VV  Q +     +S       V+AYEP+WAIGTGK AT   A E    +R+ + AN S E A A RI YGGSV   N K+  AQPD+DG LVGGASL  + F++++ +A+
Sbjct:   58 ELKIGAQTMHFEDNGAFTGEISPKALSDMGVHYVIIGHSERREMFAETDETVNKKVHAAFAHHLVPIMCCGETAEEREAGKMEAVVKEQVENGLAGLSEEQVKQTVIAYEPIWAIGTGKSATEKDANEACAYVRQTVAANFSEEAAEAIRIQYGGSVKPGNIKDYMAQPDIDGALVGGASLDADSFLELVGAAK 251          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_RHOP5 (Triosephosphate isomerase OS=Rhodopseudomonas palustris (strain BisA53) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.701e-35
Identity = 85/179 (47.49%), Postives = 106/179 (59.22%), Query Frame = 3
Query:   96 FHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 632
            F V AQ+C     GA TG++SAEMLV+     +I+GHSERR    E++  V  K   A   G   I CVGET  +R+AG T+DVV  Q        ++  N V+AYEPVWAIGTG   T    ++VH  +R  L      E  AA RI+YGGSV  +N KEL A P+V+G LVGGASLK
Sbjct:   64 FAVGAQDCHANVSGAHTGDLSAEMLVDAGASAIIVGHSERRADHGETDSVVRAKAEAAWRAGAVAIVCVGETQAERDAGQTLDVVGRQLAGSLPDGATAENTVVAYEPVWAIGTGLTPTANDVEQVHKFIRDCLTKRFGGE-GAAVRILYGGSVKPSNAKELMAVPEVNGALVGGASLK 241          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_MYCBP (Triosephosphate isomerase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.701e-35
Identity = 84/182 (46.15%), Postives = 110/182 (60.44%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKA-----IADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            AQ+      GA+TG++S   L  L   +V++GHSERR   NE +  V  K A AL  GL  I C+GE L+ REAG+ +     Q +      +A+++ S   +V AYEPVWAIGTG+VA+   AQEV   +RK L +  SP IA   R++YGGSVN  N  ++ AQ DVDG LVGGASL  E
Sbjct:   68 AQDLSPHDSGAYTGDVSGAFLAKLGCSYVVVGHSERRTYHNEDDALVAAKAATALKHGLTPIVCIGEHLDVREAGNHVAHNIEQLRGSLAGLLAEQIGS---VVTAYEPVWAIGTGRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGGSVNAKNVGDIVAQDDVDGGLVGGASLDGE 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_ACIF2 (Triosephosphate isomerase OS=Acidithiobacillus ferrooxidans (strain ATCC 23270 / DSM 14882 / NCIB 8455) GN=tpiA PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 8.701e-35
Identity = 87/189 (46.03%), Postives = 119/189 (62.96%), Query Frame = 3
Query:  111 QNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV---SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKSAE 665
            QN + +  GA+TGEIS  ML ++   +V++GHSERR I  ES+  +  K+  AL  GL  + CVGET  +R  G T  V+  Q +A+   +   +S  N+++AYEPVWAIGTG  A+P QAQ VH  +R+ L A  S ++A    ++YGGSV G N   L  Q D+DG LVGGASL+  EFI I ++AE
Sbjct:   64 QNLFWEASGAYTGEISGAMLRDMGCRYVLIGHSERRQIFAESDAQIVQKIKAALLSGLIPVVCVGETEAERAQGLTDAVLRRQLEAVLPLLNLEASQPNLIIAYEPVWAIGTGLSASPEQAQAVHVFIRE-LAAAYSAQLARRLLLLYGGSVKGNNAAALFDQADIDGALVGGASLQAGEFIQICRAAE 251          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_RALSO (Triosephosphate isomerase OS=Ralstonia solanacearum GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.136e-34
Identity = 88/179 (49.16%), Postives = 108/179 (60.34%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            AQ+   +  GAFTGE++A ML      + I+GHSERR    E++  V  K   AL  G+  I CVGETL QREAG T  VVA Q +A+ + +S     +IV+AYEPVWAIGTGK AT  QAQ VH  LR  + A     +A    I+YGGSV   N  EL    D+DG L+GGASLK E
Sbjct:   63 AQDVSAETRGAFTGEVAASMLSEFGCGYAIVGHSERRTYHGETDAQVAIKALRALEHGITPIVCVGETLAQREAGETELVVARQLEAVLESLSVEQLGHIVVAYEPVWAIGTGKTATSEQAQAVHAFLRGRV-AACDAGVAQRMPILYGGSVKPDNAAELFTMADIDGGLIGGASLKAE 240          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_NATTJ (Triosephosphate isomerase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.136e-34
Identity = 82/179 (45.81%), Postives = 111/179 (62.01%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            AQN + ++ GAFTGE+S +ML  L + +VI+GHSERR I  ES+E V  KV  AL  G+K I CVGE+  QR  G T++VV  Q K+    V S    N+V AYEPVWAIG+GK AT   A++V   +R  + +  +  +A    ++YGGSV   N +E   Q +++G LVGG SL  E
Sbjct:   62 AQNVYFEESGAFTGEVSPKMLAELGVEYVIIGHSERRNIFAESDEEVNKKVRIALKYGIKPIICVGESDAQRNEGKTLEVVENQVKSALSEVVSDTLQNVVFAYEPVWAIGSGKAATGEDAEQVCKHIRS-VISELNSSVADDIPVLYGGSVKPENLEEFMDQDNINGALVGGKSLVAE 239          
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_FINM25.101e-3545.00Triosephosphate isomerase OS=Finegoldia magna (str... [more]
TPIS_CHLCV5.101e-3543.16Triosephosphate isomerase OS=Chlamydophila caviae ... [more]
TPIS1_LISMF5.101e-3542.57Triosephosphate isomerase 1 OS=Listeria monocytoge... [more]
TPIS1_LISIN5.101e-3542.57Triosephosphate isomerase 1 OS=Listeria innocua GN... [more]
TPIS_BACSK6.662e-3544.85Triosephosphate isomerase OS=Bacillus clausii (str... [more]
TPIS_RHOP58.701e-3547.49Triosephosphate isomerase OS=Rhodopseudomonas palu... [more]
TPIS_MYCBP8.701e-3546.15Triosephosphate isomerase OS=Mycobacterium bovis (... [more]
TPIS_ACIF28.701e-3546.03Triosephosphate isomerase OS=Acidithiobacillus fer... [more]
TPIS_RALSO1.136e-3449.16Triosephosphate isomerase OS=Ralstonia solanacearu... [more]
TPIS_NATTJ1.136e-3445.81Triosephosphate isomerase OS=Natranaerobius thermo... [more]

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Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
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