CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_MYCUA (Triosephosphate isomerase OS=Mycobacterium ulcerans (strain Agy99) GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.136e-34
Identity = 84/170 (49.41%), Postives = 105/170 (61.76%), Query Frame = 3 
Query:  135 GAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            GA+TG+IS   L  L   +V++GHSERR   NE +  V  K A AL   L  I C+GE L+ REAG+ +     Q +     +S+   S +V+AYEPVWAIGTG+VA    AQEV   +R  L +  SP+IA A R++YGGSVN  N  EL AQ DVDG LVGGASL  E
Sbjct:   77 GAYTGDISGAFLAKLGCSFVVVGHSERRTYHNEDDALVAAKAAAALKHDLTPIVCIGEHLDVREAGNHVAHNVEQLRGSLSGLSAEQISKVVIAYEPVWAIGTGRVAGAADAQEVCAAIRSELGSLASPQIADAVRVLYGGSVNAKNIGELIAQADVDGGLVGGASLDGE 246
[Close]
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_MYCPU (Triosephosphate isomerase OS=Mycoplasma pulmonis GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.136e-34
Identity = 88/196 (44.90%), Postives = 124/196 (63.27%), Query Frame = 3 
Query:   87 RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAELK 671
            + + ++ AQN    + GAFTGEISA+ML +++  +VI+GHSERR    E+N+ V  K   A+  GL  I CVGE+LE+ EAG T  V+  Q K   + +   S IV+AYEP+WAIGTGKVAT   AQ++     K++ + TS ++     I YGGSV+ +N + L  Q D+DG LVGGASL+ + F ++I    LK
Sbjct:   62 KTNINLVAQNINENRSGAFTGEISAQMLKSINAKYVIVGHSERRQNYRETNKIVNQKAKAAIENGLIPIICVGESLEEYEAGKTKAVIKKQIKQSLEAL-DLSKIVVAYEPIWAIGTGKVATAEVAQQI----CKFIRSITSKDLI----IQYGGSVSPSNIENLMKQEDIDGALVGGASLEVDSFFELITFNALK 248
[Close]
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_MYCMM (Triosephosphate isomerase OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.136e-34
Identity = 84/170 (49.41%), Postives = 105/170 (61.76%), Query Frame = 3 
Query:  135 GAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSW--SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            GA+TG+IS   L  L   +V++GHSERR   NE +  V  K A AL   L  I C+GE L+ REAG+ +     Q +     +S+   S +V+AYEPVWAIGTG+VA    AQEV   +R  L +  SP+IA A R++YGGSVN  N  EL AQ DVDG LVGGASL  E
Sbjct:   77 GAYTGDISGAFLAKLGCSFVVVGHSERRTYHNEDDALVAAKAAAALKHDLTPIVCIGEHLDVREAGNHVAHNVEQLRGSLSGLSAEQISKVVIAYEPVWAIGTGRVAGAADAQEVCAAIRSELGSLASPQIADAVRVLYGGSVNAKNIGELIAQADVDGGLVGGASLDGE 246
[Close]
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHY (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.136e-34
Identity = 86/192 (44.79%), Postives = 114/192 (59.38%), Query Frame = 3 
Query:   63 LGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            L L+  SL     +AAQN      GAFTGEIS +ML +L   +VI+GHSERR I  E +E + +K+  A    L  + CVGE+L + EAG T  V+ +Q  AI   V ++   ++AYEP+WAIGTGK AT   A++V   +++    N        T +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:   51 LSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAIKS-VLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKENFGKN--------TMVIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233
[Close]
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHJ (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain J / ATCC 25934 / NCTC 10110) GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.136e-34
Identity = 86/192 (44.79%), Postives = 114/192 (59.38%), Query Frame = 3 
Query:   63 LGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            L L+  SL     +AAQN      GAFTGEIS +ML +L   +VI+GHSERR I  E +E + +K+  A    L  + CVGE+L + EAG T  V+ +Q  AI   V ++   ++AYEP+WAIGTGK AT   A++V   +++    N        T +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:   51 LSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAIKS-VLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKENFGKN--------TMVIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233
[Close]
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_MYCH7 (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain 7448) GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.136e-34
Identity = 85/192 (44.27%), Postives = 113/192 (58.85%), Query Frame = 3 
Query:   63 LGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            L L+  SL     +AAQN      GAFTGEIS +ML +L   +VI+GHSERR I  E +E + +K+  A    L  + CVGE+L + EAG T  V+ +Q  AI   V ++   ++AYEP+WAIGTGK AT   A++V   +++             T +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:   51 LSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAIKS-VLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGMIKE--------NFGKDTTVIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233
[Close]
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_MYCH2 (Triosephosphate isomerase OS=Mycoplasma hyopneumoniae (strain 232) GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.136e-34
Identity = 86/192 (44.79%), Postives = 114/192 (59.38%), Query Frame = 3 
Query:   63 LGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            L L+  SL     +AAQN      GAFTGEIS +ML +L   +VI+GHSERR I  E +E + +K+  A    L  + CVGE+L + EAG T  V+ +Q  AI   V ++   ++AYEP+WAIGTGK AT   A++V   +++    N        T +IYGGSVN  N  EL +Q  +DG LVGGASL PE
Sbjct:   51 LSLISKSLTKKLEIAAQNLSQFDSGAFTGEISGKMLQDLGTKYVIIGHSERREIFKEKDEELKNKILQAQKYDLIPVFCVGESLLEFEAGLTKKVIISQINAIKS-VLNFQKAIIAYEPIWAIGTGKTATAAIAEKVCGLIKENFGKN--------TMVIYGGSVNSKNINELVSQKSIDGALVGGASLDPE 233
[Close]
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_LAWIP (Triosephosphate isomerase OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.136e-34
Identity = 87/190 (45.79%), Postives = 112/190 (58.95%), Query Frame = 3 
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWL---FANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 653
            + AQN +    GAFTGEIS EML ++   WV++GHSERR I+ E    +  K   ALS G  +I C+GET ++REAG    V+  Q +     + S   S +V+AYEPVWAIGTGKVA+       H  +RK L     NTS  I    RI+YGGSVN  N   +    +V+G LVGGASL+ E F+ II
Sbjct:   61 IGAQNFYPAPSGAFTGEISLEMLKDVGCSWVLIGHSERRHIIGELPTLIEQKTKLALSYGFSIILCIGETAQEREAGLVNSVLEQQLRTSLTDIPSKAISQLVIAYEPVWAIGTGKVASQQDIITAHTLIRKILHNMIGNTSQNI----RILYGGSVNSENASSILELDNVNGLLVGGASLQAESFMKII 246
[Close]
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_THEYD (Triosephosphate isomerase OS=Thermodesulfovibrio yellowstonii (strain ATCC 51303 / DSM 11347 / YP87) GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.484e-34
Identity = 80/195 (41.03%), Postives = 116/195 (59.49%), Query Frame = 3 
Query:   75 KSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIK 656
            K  +     + AQN + +  GA+TGE+S  ML +  + +VI+GHSERR    E+++ +  K+   + +GLKVI C+GET E R+   TM+++  Q +     ++S   + +AYEPVWAIGTG VAT  Q ++ H  +R  L      E A   RI+YGGSV   N K + A  +V+G LVGGASL P +F  I+K
Sbjct:   52 KVLINTSIKLCAQNAFYENKGAYTGEVSPAMLKDCGVEYVIIGHSERRKYFYENDDIINKKIHACIKEGLKVIFCIGETFEDRQNNKTMEILKTQIRNGLLEINSPEALTIAYEPVWAIGTGVVATEEQIKQSHLFIRNQL-KEIYGERANEVRILYGGSVTPENIKSIMAIDNVEGVLVGGASLDPLKFAKIVK 245
[Close]
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_THET2 (Triosephosphate isomerase OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=tpiA PE=3 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 1.484e-34
Identity = 84/188 (44.68%), Postives = 113/188 (60.11%), Query Frame = 3 
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 662
            AQ+    K GA+TGE+SA ML +L   + I+GHSERR    E++  V +K    L +G+  I CVGE LE RE G  +     Q +   + V       +V+AYEPVWAIGTGK ATP  A+ +H E+RK L        A+  RI+YGGSVN  N  +L + P+VDG LVGGASL+ E F+ +++ A
Sbjct:   62 AQDVSAHKEGAYTGEVSARMLSDLGCRYAIVGHSERRRYHGETDALVAEKAKRLLEEGITPILCVGEPLEVREKGEAVPYTLRQLRGSLEGVEPPGPEALVIAYEPVWAIGTGKNATPEDAEAMHQEIRKALSERYGEAFASRVRILYGGSVNPKNFADLLSMPNVDGGLVGGASLELESFLALLRIA 249
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_MYCUA1.136e-3449.41Triosephosphate isomerase OS=Mycobacterium ulceran... [more]
TPIS_MYCPU1.136e-3444.90Triosephosphate isomerase OS=Mycoplasma pulmonis G... [more]
TPIS_MYCMM1.136e-3449.41Triosephosphate isomerase OS=Mycobacterium marinum... [more]
TPIS_MYCHY1.136e-3444.79Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCHJ1.136e-3444.79Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCH71.136e-3444.27Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_MYCH21.136e-3444.79Triosephosphate isomerase OS=Mycoplasma hyopneumon... [more]
TPIS_LAWIP1.136e-3445.79Triosephosphate isomerase OS=Lawsonia intracellula... [more]
TPIS_THEYD1.484e-3441.03Triosephosphate isomerase OS=Thermodesulfovibrio y... [more]
TPIS_THET21.484e-3444.68Triosephosphate isomerase OS=Thermus thermophilus ... [more]

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Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
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