CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_MYCHR (Triosephosphate isomerase OS=Mycoplasma hyorhinis GN=tpiA PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.064e-32
Identity = 82/185 (44.32%), Postives = 115/185 (62.16%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 653
            +A QN    + GA+TGEISA+ML++L++ + I+GHSERR    E++  V  K   A+   +  + CVGETLE+ EA  T  V+  Q K     V   S +++AYEP+WAIGTGK ATP QAQ+V   +RK    N +        I+YGGSV+  N ++L  Q D++G LVGGASLK + FI ++
Sbjct:   64 LAVQNMSQFEKGAYTGEISAQMLLDLNVKYAIIGHSERRQYFKETDLDVNAKTQQAIKNNIIPVVCVGETLEEYEAQKTSQVIEYQLKNSLKDV-DLSKVIVAYEPIWAIGTGKTATPEQAQQVCKFIRKQTNKNLT--------ILYGGSVSQENIEQLLNQADINGALVGGASLKVDSFIKLL 239          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SYNY3 (Triosephosphate isomerase OS=Synechocystis sp. (strain PCC 6803) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.389e-32
Identity = 81/179 (45.25%), Postives = 108/179 (60.34%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            + AQN   +  GA+TGEISA ML  + I +V++GHSERR    E++E    +V  A   GL  I CVGE+  QR+AG T  V+  Q K     V   SN+V+AYEP+WAIGTG      +A  V   +R+ L   T+ ++     I YGGSVN  N  E+ AQP++DG LVGGASL+P+
Sbjct:   62 LGAQNVHWEASGAYTGEISAAMLTEIGIHYVVIGHSERRQYFGETDETANLRVLAAQKAGLIPILCVGESKAQRDAGETEQVIVDQVKKGLVNVDQ-SNLVIAYEPIWAIGTGDTCAATEANRVIGLIREQL---TNSQVT----IQYGGSVNANNVDEIMAQPEIDGALVGGASLEPQ 232          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_ONYPE (Triosephosphate isomerase OS=Onion yellows phytoplasma GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.814e-32
Identity = 81/184 (44.02%), Postives = 110/184 (59.78%), Query Frame = 3
Query:   93 DFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            +  V AQN + +  GAFTGE+S + L++L +  V+LGHSERR    E+++ V  K+  AL   L    CVGE+L  +E   T   +  Q   I   V   +  NI++AYEPVWAIGTGK ATP  A +V  ++R  + A  S + + A RIIYGGSV+ AN K +  QP +DG L G ASL+ E
Sbjct:   61 NLQVGAQNMFYESEGAFTGEVSPQNLLSLGVKHVLLGHSERRTFFGETDQTVNLKLLSALKHKLVPTVCVGESLLTKENNQTQVFLDQQLTNIFAGVPEEALQNIIIAYEPVWAIGTGKSATPQDANKVIEQIRDKVTALYSSQASCAMRIIYGGSVSVANIKTILEQPAIDGILAGKASLQTE 244          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_KINRD (Triosephosphate isomerase OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.814e-32
Identity = 83/177 (46.89%), Postives = 108/177 (61.02%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSWS-NIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGAS 626
            + AQ+      GA+TGE+SA ML  L + +V +GHSERR    E++  V  K A AL+ GL  I CVGE LE R+A   ++    Q T+A+    +  +  +VLAYEPVWAIGTG+VATP  AQEV   LR+ +        A A R++YGGSV  A+   +  QPDVDG LVGGAS
Sbjct:   68 LGAQDVSEHDSGAYTGEVSAAMLAKLGVTYVAVGHSERRQYHGETDATVRAKAAKALAAGLTPIVCVGEALEIRKAEQHVEFTVGQVTQALTGLTAEQAAGLVLAYEPVWAIGTGEVATPEDAQEVCAALREAVAELFDRATADAVRVLYGGSVKPASIAAIMRQPDVDGALVGGAS 244          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CLOBL (Triosephosphate isomerase OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.369e-32
Identity = 81/181 (44.75%), Postives = 104/181 (57.46%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            V AQN   ++ GA+TGEI+ +ML  L + +VI+GHSERR   NE++E V  KV  A    L  I C GE+LE+RE   T  V+  Q K     +S      +V+AYEP+WAIGTGK AT  QA E    +R  +       +A   RI YGGSV     K   A+ ++DG LVGGASLK E
Sbjct:   60 VGAQNMHFEESGAYTGEIAPKMLEELGVHYVIIGHSERRQYFNETDETVNKKVKKAFEHNLIPIVCCGESLEEREGNITEKVLEGQIKVGLKELSKEQVEKLVIAYEPIWAIGTGKTATDEQANETIGYIRTVVKDMYGENVADKVRIQYGGSVKPGTIKAQMAKEEIDGALVGGASLKAE 240          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_BORHD (Triosephosphate isomerase OS=Borrelia hermsii (strain DAH) GN=tpiA PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 2.369e-32
Identity = 83/188 (44.15%), Postives = 112/188 (59.57%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLK-VIACVGETLEQREAGSTMDVVAAQTKA--IADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDII 653
            + AQN   +  GA T EIS  ML+   + +VILGHSE R  L +++E +  K+   L    K +I C+GETL +RE   T+DVV  Q +   ++   S    I+LAYEPVWAIGTGK AT  +AQEVH  +R  + +  S   A    I YGGSVN  N   L  + D+DG L+GGASLK + F++I+
Sbjct:   62 LGAQNMSYENSGARTSEISPSMLLEFGVDYVILGHSECRTYLGDTDEVINKKILAGLKHPFKYLILCIGETLSERENNKTLDVVLNQIRRGLMSVSESDLKRIILAYEPVWAIGTGKTATKEEAQEVHRAIRLEIESLYSTSAADDIIIQYGGSVNVDNVGGLMGENDIDGALIGGASLKADSFLNIV 249          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_MYCGA (Triosephosphate isomerase OS=Mycoplasma gallisepticum GN=tpiA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.095e-32
Identity = 84/202 (41.58%), Postives = 118/202 (58.42%), Query Frame = 3
Query:   63 LGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKS 659
            LGL     R +  V AQ+       A TG +S E L ++ + +VI+GHSERR + +ES+E +  KV   L   ++ I C+GETLE+ EA  T  V+  Q +     + S    ++++AYEPVWAIGTGK A+   AQ+    +R  L   +S  IA    I+YGGSV   N  EL AQ D++G LVGGASL P +FI +I++
Sbjct:   50 LGLANQLERNECLVLAQDANYVMNKANTGTVSYEQLKDIGVNYVIIGHSERRKLFHESDELINQKVKTLLENKMRPILCIGETLEEYEANKTKAVLKDQLEKDLKGIDSSLLKDLIIAYEPVWAIGTGKTASSQTAQDAIAYIRTVLGLLSSKTIANELPILYGGSVTPDNVSELLAQKDINGALVGGASLDPHKFIQLIEA 251          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_MYCFL (Triosephosphate isomerase OS=Mycoplasma flocculare GN=tpiA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.095e-32
Identity = 87/198 (43.94%), Postives = 115/198 (58.08%), Query Frame = 3
Query:   63 LGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDII 653
            L L+ +S      VAAQN      GAFTGEISA+ML +L + +VI+GHSERR I  E  E + +K+  A    L  + CVGE+L + EA  T  V+  Q   +   V ++   ++AYEP+WAIGTGK AT   A++V     K +  N    I    R+IYGGSVN  N  EL  Q ++DG LVG ASL P EF+ I+
Sbjct:   51 LALISTSKIDKLKVAAQNLSQFDSGAFTGEISAKMLQDLAVHYVIIGHSERREIFKEIGEDLTNKILQAQKYNLIPVFCVGESLSEFEANETEKVIIGQINEVKS-VLNFEKAIIAYEPIWAIGTGKTATAQIAEQV----CKLIKNNFGKNI----RVIYGGSVNSKNINELLLQKNIDGALVGKASLDPEEFVKIL 239          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_BUCAP (Triosephosphate isomerase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=tpiA PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.095e-32
Identity = 77/196 (39.29%), Postives = 117/196 (59.69%), Query Frame = 3
Query:   93 DFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRII--YGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSAE 665
            + H+AAQN  V   GAFTGE SA M+ ++ + ++I+GHSERRL+ NE+NE +  K     +  L  I C+GET  ++++  T  ++  Q  +I +     ++ N V+AYEP+W+IGTG  A P   Q +H  ++ ++      +I +A  +I  YGGSV   N      QPD+DG L+G ASLK  EF+ IIK ++
Sbjct:   59 NIHLAAQNIDVNLTGAFTGENSALMMKDIGVKYIIIGHSERRLLHNENNEIIAKKFCLVKNLNLVPILCIGETEAEKKSNKTEKILKEQLNSIFNSFGEKAFRNAVIAYEPIWSIGTGVSADPKNVQLIHKFIKNYI---KKYDIVSAENLIVQYGGSVTSLNAGNFLKQPDIDGLLIGSASLKHEEFLKIIKISD 251          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_SYNR3 (Triosephosphate isomerase OS=Synechococcus sp. (strain RCC307) GN=tpiA PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.894e-32
Identity = 79/183 (43.17%), Postives = 109/183 (59.56%), Query Frame = 3
Query:   93 DFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWL-FANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE 638
            D  +A+QN   K  GAFTGEISAEML+ L + + I+GHSE R   +ES+E +  +   + + GL  I CVGE+ EQR +  T  V+  Q +   + +   S +V+AYEP+WAIGTGK     +A  V   +R W+ + N +        I YGGSV   N  EL A+ D+DG LVGGASL+P+
Sbjct:   63 DVQIASQNVHWKDSGAFTGEISAEMLLELGVGYTIVGHSEPRKYFSESDEQINQRARASQAAGLIPILCVGESDEQRSSNETERVIRRQVEQGLEGIDP-SKLVVAYEPIWAIGTGKTCESEEANRVCGLIRNWVGYPNLT--------IQYGGSVKPGNIDELMAKSDIDGVLVGGASLEPD 236          
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_MYCHR1.064e-3244.32Triosephosphate isomerase OS=Mycoplasma hyorhinis ... [more]
TPIS_SYNY31.389e-3245.25Triosephosphate isomerase OS=Synechocystis sp. (st... [more]
TPIS_ONYPE1.814e-3244.02Triosephosphate isomerase OS=Onion yellows phytopl... [more]
TPIS_KINRD1.814e-3246.89Triosephosphate isomerase OS=Kineococcus radiotole... [more]
TPIS_CLOBL2.369e-3244.75Triosephosphate isomerase OS=Clostridium botulinum... [more]
TPIS_BORHD2.369e-3244.15Triosephosphate isomerase OS=Borrelia hermsii (str... [more]
TPIS_MYCGA3.095e-3241.58Triosephosphate isomerase OS=Mycoplasma gallisepti... [more]
TPIS_MYCFL3.095e-3243.94Triosephosphate isomerase OS=Mycoplasma flocculare... [more]
TPIS_BUCAP3.095e-3239.29Triosephosphate isomerase OS=Buchnera aphidicola s... [more]
TPIS_SYNR36.894e-3243.17Triosephosphate isomerase OS=Synechococcus sp. (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
back to top