CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_PLAF7 (Triosephosphate isomerase OS=Plasmodium falciparum (isolate 3D7) GN=TPI PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 8.962e-48
Identity = 96/193 (49.74%), Postives = 128/193 (66.32%), Query Frame = 3
Query:   84 LRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPEFIDIIKSA 662
            L+  F    QN      G++TGE+SAE+  +L+I +VI+GH ERR   +E++E V +K+  +L   LK + C GE+LEQRE   T++V+  Q KA  D + ++ N++LAYEP+WAIGTGK ATP QAQ VH E+RK +      + A   RI+YGGSVN  NC  L  Q D+DGFLVG ASLK  F+DIIKSA
Sbjct:   55 LQSKFSTGIQNVSKFGNGSYTGEVSAEIAKDLNIEYVIIGHFERRKYFHETDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNFDNVILAYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASLKESFVDIIKSA 247          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CHLT3 (Triosephosphate isomerase OS=Chloroherpeton thalassium (strain ATCC 35110 / GB-78) GN=tpiA PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.587e-47
Identity = 107/191 (56.02%), Postives = 128/191 (67.02%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTK-AIAD-RVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 665
            +AAQNC+ +  GA+TGEISA ML N    +VILGHSERR   NE++E V  KV  ALS  L VI CVGETLEQRE+G T  VV  Q +  + D       ++V+AYEPVWAIGTGK ATP QAQEVH  +R  +      E+A   RI YGGSV  +N KEL   PD+DG L+GGASL  E F++IIKSAE
Sbjct:   62 LAAQNCFYEDQGAYTGEISAAMLRNSGCEYVILGHSERRQYFNETDEIVNKKVKNALSVELDVIMCVGETLEQRESGVTKSVVETQVRGGLKDLTAEDMKSVVIAYEPVWAIGTGKTATPEQAQEVHAFIRGIVKDMFGEEVANELRIQYGGSVKTSNAKELFGMPDIDGGLIGGASLNAEDFVEIIKSAE 252          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_PROA2 (Triosephosphate isomerase OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=tpiA PE=3 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 9.909e-47
Identity = 101/190 (53.16%), Postives = 126/190 (66.32%), Query Frame = 3
Query:   99 HVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 665
            H+AAQNC  +  GAFTGE+S  ML      +VI+GHSERR    ++N  V  KV  ALS GL VI CVGETL++RE G T +VV  Q K   + V+   +IV+AYEPVWAIGTGK A+ +QAQEVH  +R  +    S   AA  RI YGGSV  +N +EL A PD+DG L+GGASL  E F+ I+K+AE
Sbjct:   61 HLAAQNCHYEDDGAFTGEVSVRMLDEAGCSYVIVGHSERRQYFGDTNPVVNLKVKKALSAGLNVILCVGETLDEREKGITTEVVTCQVKEGLEGVADIGDIVIAYEPVWAIGTGKTASSLQAQEVHASIRATVAGLYSEPAAAGVRIQYGGSVKPSNAEELFAMPDIDGGLIGGASLNAEDFVAIVKAAE 250          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CHLP8 (Triosephosphate isomerase OS=Chlorobaculum parvum (strain NCIB 8327) GN=tpiA PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.431e-45
Identity = 103/189 (54.50%), Postives = 128/189 (67.72%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQT-KAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSA 662
            +AAQNC  +  GAFTGE+S  ML      +VILGHSERR +  E+NE V  KV  AL++GL+VI CVGETL++REAG T  +V AQ  + +AD VS  S +V+AYEPVWAIGTGK AT  QAQ+VH  +R  +        A   RI YGGSV  +N  EL A PD+DG L+GGASLK E F+ II++A
Sbjct:   62 LAAQNCHYENDGAFTGEVSTRMLAAAGCSYVILGHSERRQLFGETNEIVNRKVKKALAEGLRVILCVGETLDEREAGVTDKIVTAQVVEGLAD-VSDISTLVIAYEPVWAIGTGKTATKEQAQDVHASIRSTIEKLYGDSAARHLRIQYGGSVKPSNAAELFAMPDIDGGLIGGASLKVEDFMAIIEAA 249          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_PSEU5 (Triosephosphate isomerase OS=Pseudomonas stutzeri (strain A1501) GN=tpiA PE=3 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 7.101e-45
Identity = 101/191 (52.88%), Postives = 131/191 (68.59%), Query Frame = 3
Query:  102 VAAQNCWVKKG-GAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD--RVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            V AQ+C ++ G GA TGE+SA+ LV+L   WV++GHSERRL+L E++E V  K A A + GLK + C+GETLE+REAG T++VVA Q   + D   V ++ + V+AYEPVWAIG+G  ATP QAQEVH  +R  L A +   IA   R++YGGSV   N  EL A  D+DG LVGGASLK  EF  I ++A
Sbjct:   60 VGAQDCALQSGFGALTGEVSADQLVDLGCEWVLVGHSERRLVLGETDEVVSQKFAAAQAGGLKPVLCLGETLEEREAGRTLEVVARQLGQVLDDQGVEAFQSAVIAYEPVWAIGSGLTATPEQAQEVHAAIRDQL-ARSDRRIAEGVRLLYGGSVKADNAAELFAMADIDGGLVGGASLKADEFGAICRAA 249          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_CHLPD (Triosephosphate isomerase OS=Chlorobium phaeobacteroides (strain DSM 266) GN=tpiA PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.211e-44
Identity = 99/188 (52.66%), Postives = 122/188 (64.89%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            + AQNC  +  GAFTGE+SA M+       VI GHSERR    E+N  V  KV +ALS+GL+VI C GETLEQRE G T DVV AQ +     +   SNIV+AYEPVWAIGTGK AT  QA+EVH  +R  +      E A   RI YGGSV  +N KEL + P++DG L+GGASL   +F+ I+K+A
Sbjct:   61 LVAQNCHFEPDGAFTGEVSASMVREAGCSAVIAGHSERRHCFGETNAIVNRKVKHALSEGLQVIMCAGETLEQREGGVTGDVVTAQVREGLLGIDDISNIVIAYEPVWAIGTGKTATSEQAEEVHLLIRNTVSDLFGEEAAGRLRIQYGGSVKPSNAKELFSMPNIDGGLIGGASLNAADFVAIVKAA 248          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_BACFR (Triosephosphate isomerase OS=Bacteroides fragilis GN=tpiA PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.698e-44
Identity = 95/178 (53.37%), Postives = 119/178 (66.85%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 632
            V A+NC  K+ GA+TGE+SA M+ +    +VILGHSERR    E+ E + DKV  AL+ GL  I C+GE LE+REA    +VVAAQ  ++ D     +S IVLAYEPVWAIGTGK A+P QAQE+H  +R  +      EIA  T I+YGGS   +N KEL A PDVDG L+GGA+LK
Sbjct:   62 VGAENCADKESGAYTGEVSAAMVASTGAKYVILGHSERRAYYGETVEILKDKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQLASVFDLSAEDFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIRSAVAEKYGKEIADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAALK 239          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_BACFN (Triosephosphate isomerase OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=tpiA PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.698e-44
Identity = 95/178 (53.37%), Postives = 119/178 (66.85%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAD-RVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK 632
            V A+NC  K+ GA+TGE+SA M+ +    +VILGHSERR    E+ E + DKV  AL+ GL  I C+GE LE+REA    +VVAAQ  ++ D     +S IVLAYEPVWAIGTGK A+P QAQE+H  +R  +      EIA  T I+YGGS   +N KEL A PDVDG L+GGA+LK
Sbjct:   62 VGAENCADKESGAYTGEVSAAMVASTGAKYVILGHSERRAYYGETVEILKDKVKLALANGLTPIFCIGEVLEEREANKQNEVVAAQLASVFDLSAEDFSKIVLAYEPVWAIGTGKTASPAQAQEIHAFIRSAVAEKYGKEIADNTSILYGGSCKPSNAKELFANPDVDGGLIGGAALK 239          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_HERAR (Triosephosphate isomerase OS=Herminiimonas arsenicoxydans GN=tpiA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.025e-43
Identity = 98/190 (51.58%), Postives = 124/190 (65.26%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            + AQ+      GA+TGE+S  ML+     +VI+GHSERR    E+NE V  K   ALS GL  I CVGETLEQREAG T +VV  Q  A+   +  +  + IV+AYEPVWAIGTGK ATP  AQEVH  LR+ L A  + + A   RI+YGGS+   N KEL A PD+DG L+GGA+LK  +F+ II++A
Sbjct:   60 LGAQDVSSHDSGAYTGEVSTAMLLEFACRYVIVGHSERRAYFGETNELVAQKTVRALSAGLMPIVCVGETLEQREAGQTDEVVGRQIDAVLSSIAENDLAKIVVAYEPVWAIGTGKTATPEMAQEVHVMLRRRLHAKNA-QAATEVRILYGGSMKPDNAKELLAMPDIDGGLIGGAALKAADFLAIIRAA 248          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_ALCBS (Triosephosphate isomerase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=tpiA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.749e-43
Identity = 95/205 (46.34%), Postives = 138/205 (67.32%), Query Frame = 3
Query:   60 FLGLVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 665
            +L   +S++     + +QN   ++ GAFTGE+SA ML  +   +VI+GHSERR +  E++  +  K A+A + GL  I CVGETLE+R++G+T  +V  Q +A+ D   V++++N ++AYEPVWAIGTGK A+P QAQ VH  LR++L A   P+IA + R++YGGSV   N   L AQ D+DG L+GGASL  + FI I ++AE
Sbjct:   44 YLAAARSAMPGAVGIGSQNVSEQEDGAFTGEVSAPMLAEVGCGYVIIGHSERRALYGETDAQIASKFAHAQAAGLVPILCVGETLEERDSGNTDTIVCGQLRAVVDAVGVAAFANAIVAYEPVWAIGTGKTASPEQAQAVHACLRQFL-AKDDPDIAQSLRLLYGGSVKADNAALLFAQSDIDGGLIGGASLTADSFIAICQAAE 247          
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_PLAF78.962e-4849.74Triosephosphate isomerase OS=Plasmodium falciparum... [more]
TPIS_CHLT37.587e-4756.02Triosephosphate isomerase OS=Chloroherpeton thalas... [more]
TPIS_PROA29.909e-4753.16Triosephosphate isomerase OS=Prosthecochloris aest... [more]
TPIS_CHLP81.431e-4554.50Triosephosphate isomerase OS=Chlorobaculum parvum ... [more]
TPIS_PSEU57.101e-4552.88Triosephosphate isomerase OS=Pseudomonas stutzeri ... [more]
TPIS_CHLPD1.211e-4452.66Triosephosphate isomerase OS=Chlorobium phaeobacte... [more]
TPIS_BACFR2.698e-4453.37Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_BACFN2.698e-4453.37Triosephosphate isomerase OS=Bacteroides fragilis ... [more]
TPIS_HERAR1.025e-4351.58Triosephosphate isomerase OS=Herminiimonas arsenic... [more]
TPIS_ALCBS1.749e-4346.34Triosephosphate isomerase OS=Alcanivorax borkumens... [more]

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Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
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