CX295728

Overview
NameCX295728
Unique NameCX295728
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_HAHCH (Triosephosphate isomerase OS=Hahella chejuensis (strain KCTC 2396) GN=tpiA PE=3 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 5.627e-42
Identity = 93/188 (49.47%), Postives = 121/188 (64.36%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASL-KPEFIDIIKSA 662
            + +QNC   + GA+TGE+SA+M  ++   WVILGHSERR +  E++E +  KV  A+  GL  I CVGETL  RE+G   +V   Q  A+   V    + V+AYEPVWAIGTGK A+P  AQ +H  LR  +     P+IA   RI+YGGSV  +N KEL + PDVDG LVGGASL   EF+ II++A
Sbjct:   60 LGSQNCSATEDGAYTGEVSAKMCADMKCSWVILGHSERRALYAENDEVIACKVKRAVESGLAPILCVGETLADRESGRAEEVTLKQLDAVFMSVQPDDSWVVAYEPVWAIGTGKTASPEDAQSMHKALRNNI-RKHFPQIADKIRILYGGSVKSSNAKELFSMPDVDGALVGGASLVSEEFVSIIEAA 246          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_KLEPN (Triosephosphate isomerase OS=Klebsiella pneumoniae GN=tpiA PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.349e-42
Identity = 96/192 (50.00%), Postives = 120/192 (62.50%), Query Frame = 3
Query:   99 HVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 665
            H+ AQN  V   GAFTGE SAEML ++   ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      + +  +V+AYEPVWAIGTGK ATP QAQ VH  +R  + A    +IA    I YGGSVN  N  EL  QPD+DG LVGGASLK + F  I+K+AE
Sbjct:   60 HLGAQNVDVNLSGAFTGETSAEMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAAVFEGVVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKIAEQVIIQYGGSVNAGNAAELFTQPDIDGALVGGASLKADAFAVIVKAAE 250          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_BACCN (Triosephosphate isomerase OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=tpiA PE=3 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.349e-42
Identity = 98/202 (48.51%), Postives = 126/202 (62.38%), Query Frame = 3
Query:   69 LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSW-SNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKSAE 665
            LV ++   D  V AQN   +K GAFTGEIS   L +L + +V+LGHSERR +  E++E V  K   A   GL  I C GETLE+RE+G T D+VA Q TKA+A          V+AYEP+WAIGTGK ++   A EV   +RK +    SP  A A RI YGGSV   N KE  AQPD+DG LVGGASL+P  F+ ++++ +
Sbjct:   50 LVAATQGTDLKVGAQNMHFEKNGAFTGEISPVALSDLKVSYVVLGHSERREMFAETDETVNKKTLAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKATVIAYEPIWAIGTGKSSSAEDANEVCAHIRKVVAEAVSPAAAEAVRIQYGGSVKPGNIKEYMAQPDIDGALVGGASLEPASFLGLLEAVK 251          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_ENT38 (Triosephosphate isomerase OS=Enterobacter sp. (strain 638) GN=tpiA PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.598e-42
Identity = 96/191 (50.26%), Postives = 121/191 (63.35%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAI--ADRVSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIKSAE 665
            + AQN  V   GAFTGE SAEML ++   ++I+GHSERR    ES+E +  K A    QGL  + C+GET  + EAG T +V A Q  A+      S++  +V+AYEPVWAIGTGK ATP QAQ VH  +R  + A    ++A    I YGGSVN AN  EL  QPD+DG LVGGASLK + F  I+K+AE
Sbjct:   61 LGAQNVDVNLSGAFTGETSAEMLKDIGAKYIIIGHSERRTYHKESDELIAKKFAVLKEQGLIPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGASAFEGVVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKADAKVAEQVIIQYGGSVNAANAAELFTQPDIDGALVGGASLKADAFAVIVKAAE 250          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_BACWK (Triosephosphate isomerase OS=Bacillus weihenstephanensis (strain KBAB4) GN=tpiA PE=3 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.598e-42
Identity = 97/191 (50.79%), Postives = 119/191 (62.30%), Query Frame = 3
Query:   69 LVKSSLRPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQ-TKAIADRVSSWSNI-VLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP 635
            LV  +   D  V AQN   +K GAFTGEIS   L +L + +V+LGHSERR +  E++E V  K   A   GL  I C GETLE+RE+G T D+VA Q TKA+A        + V+AYEP+WAIGTGK ++   A EV   +RK +    SPE A A RI YGGSV   N KE  AQ D+DG LVGGASL+P
Sbjct:   50 LVAKAEGTDLQVGAQNMHFEKNGAFTGEISPVALSDLKVGYVVLGHSERREMFAETDESVNKKTLAAFEHGLTPIVCCGETLEERESGKTFDLVAGQVTKALAGLTEEQVKVTVIAYEPIWAIGTGKSSSSADANEVCAHIRKVVAEAVSPEAAEAVRIQYGGSVKPENIKEYMAQSDIDGALVGGASLEP 240          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_PSEPG (Triosephosphate isomerase OS=Pseudomonas putida (strain GB-1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.253e-41
Identity = 94/191 (49.21%), Postives = 129/191 (67.54%), Query Frame = 3
Query:  102 VAAQNCWVK-KGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKSA 662
            V AQN  V+ + GA TGE++ E LV      V++GHSERR ++ E++E +  K A A ++GLK + C+GETLE+REAG T++VV  Q  +I +   V +++N V+AYEPVWAIGTG  ATP QAQ+VH  +R  L A  + E+AA  +++YGGSV  AN  EL   PD+DG L+GGASL   EF  I ++A
Sbjct:   60 VGAQNSAVQPEQGALTGEVAPEQLVEAGCKLVLIGHSERRQVIGETDEVLNRKFAAAQAKGLKPVLCIGETLEEREAGKTLEVVGRQLSSIIEAFGVKAFANAVIAYEPVWAIGTGLTATPQQAQDVHAAIRGQLAAEDA-EVAAKVQLLYGGSVKAANAAELFGMPDIDGGLIGGASLNADEFGAICRAA 249          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_PARD8 (Triosephosphate isomerase OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=tpiA PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.253e-41
Identity = 94/189 (49.74%), Postives = 125/189 (66.14%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVSS--WSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDIIKS 659
            VAA+NC  K+ GA+TGE+SA M+ +    +VILGHSERR   +E+ E +  KV  AL+ GL  I C+GE LE+REAG   +VV AQ       +S+  +  I+LAYEPVWAIGTGK A+  QA+E+H  +R  L A    E+A    I+YGGS N  N KEL A+P+VDG L+GGASL   +F+ II++
Sbjct:   62 VAAENCADKEKGAYTGEVSAAMVASTGAKYVILGHSERRAYYHETPEILKTKVELALANGLTPIFCIGEVLEEREAGKHFEVVDAQIAGSLFDLSAEDFGKIILAYEPVWAIGTGKTASAEQAEEIHAHIRATLAAKYGNEVADNCTILYGGSCNAGNAKELFAKPNVDGGLIGGASLAVDKFMPIIEA 250          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_PELCD (Triosephosphate isomerase OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=tpiA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.637e-41
Identity = 92/193 (47.67%), Postives = 121/193 (62.69%), Query Frame = 3
Query:   87 RPDFHVAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRV--SSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKPE-FIDIIK 656
            + D  VAAQNC+ +  GAFTGE+S  +L +    +VI+GHSERR +  ES+ F+  KV   +  GL  I C+GETLE+REA  T DV+  Q +   + +  ++   IV+AYEPVWAIGTGK AT  QAQ+ H  +R  +      ++A   RI+YGGSV   N   L  QPD+DG LVGGASL  E FI I+K
Sbjct:   56 KSDISVAAQNCYPENQGAFTGEVSPALLKDAGCRYVIVGHSERRQLFAESDAFINRKVKAVIDAGLSAILCIGETLEEREADKTFDVLERQVRCGLEGLDAAAMEQIVVAYEPVWAIGTGKTATDSQAQQAHSFIRSLVNDIFGSKVAQQVRIVYGGSVKPGNVDGLLQQPDIDGALVGGASLNAEDFIRIVK 248          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_FLAJ1 (Triosephosphate isomerase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=tpiA PE=3 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.637e-41
Identity = 91/187 (48.66%), Postives = 127/187 (67.91%), Query Frame = 3
Query:  102 VAAQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADRVS--SWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLK-PEFIDII 653
            V+AQN    +GGAFTGEISA+ML ++ +  VILGHSERR I +E++  + +KV  AL   + VI C GE L+ R++G+  ++V  Q +     ++  SWS IVLAYEPVWAIGTG+ A+P QAQE+H  +R+ +      EIA    I+YGGSV   N KE+ ++PDVDG L+GGA+LK  +F+ I+
Sbjct:   61 VSAQNVHQAEGGAFTGEISADMLTSIGVNTVILGHSERRAIFHETDALIANKVDTALKHDMTVIFCFGEELKDRQSGNHFNIVENQLRDGVFHIAKESWSKIVLAYEPVWAIGTGETASPEQAQEMHEFIRETIRKAFGAEIADEVSILYGGSVKPENAKEIFSKPDVDGGLIGGAALKADDFLAIV 247          
BLAST of CX295728 vs. ExPASy Swiss-Prot
Match: TPIS_VIBSA (Triosephosphate isomerase OS=Vibrio sp. (strain ANT-300) GN=tpiA PE=3 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 2.138e-41
Identity = 96/188 (51.06%), Postives = 118/188 (62.77%), Query Frame = 3
Query:  108 AQNCWVKKGGAFTGEISAEMLVNLDIPWVILGHSERRLILNESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIADR--VSSWSNIVLAYEPVWAIGTGKVATPVQAQEVHFELRKWLFANTSPEIAAATRIIYGGSVNGANCKELAAQPDVDGFLVGGASLKP-EFIDIIKSA 662
            AQ+C V   GAFTGE SA ML      + ++GHSERR+I  ES+E V DK A     GL  + C+GETLEQ EAG T  VV AQ +A+  +  ++S +N V+ YEPVWAIGTGK ATP  AQE+   +R WL A     +A   +I+YGGSV  AN  EL  Q D+DG LVGGASL   EF  +I  A
Sbjct:   63 AQDCDVNTSGAFTGENSAVMLKEFGCKYTLVGHSERRVIHGESSEVVADKFAVTPENGLVPVLCIGETLEQFEAGETKAVVEAQLQAVVTKSGITSLNNAVIGYEPVWAIGTGKTATPEIAQEIPAHIRSWL-AEQDAAVANKVQILYGGSVKPANSAELFGQADIDGGLVGGASLDAVEFSKVISGA 249          
The following BLAST results are available for this feature:
BLAST of CX295728 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
TPIS_HAHCH5.627e-4249.47Triosephosphate isomerase OS=Hahella chejuensis (s... [more]
TPIS_KLEPN7.349e-4250.00Triosephosphate isomerase OS=Klebsiella pneumoniae... [more]
TPIS_BACCN7.349e-4248.51Triosephosphate isomerase OS=Bacillus cereus subsp... [more]
TPIS_ENT389.598e-4250.26Triosephosphate isomerase OS=Enterobacter sp. (str... [more]
TPIS_BACWK9.598e-4250.79Triosephosphate isomerase OS=Bacillus weihenstepha... [more]
TPIS_PSEPG1.253e-4149.21Triosephosphate isomerase OS=Pseudomonas putida (s... [more]
TPIS_PARD81.253e-4149.74Triosephosphate isomerase OS=Parabacteroides dista... [more]
TPIS_PELCD1.637e-4147.67Triosephosphate isomerase OS=Pelobacter carbinolic... [more]
TPIS_FLAJ11.637e-4148.66Triosephosphate isomerase OS=Flavobacterium johnso... [more]
TPIS_VIBSA2.138e-4151.06Triosephosphate isomerase OS=Vibrio sp. (strain AN... [more]

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Properties
Property NameValue
Genbank descriptionC05075C06SK DroRLeaf1 Citrus clementina cDNA clone C05075C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295728 ID=CX295728; Name=CX295728; organism=Citrus clementina; type=EST; length=720bp
CTGAAGGTCAAGTTCCATCTTCTGATGTCGTTGAGGTCGTTGTTAGCCCT
CCGTTTGTGTTTCTTGGACTGGTGAAGAGTTCGTTGAGGCCTGATTTTCA
TGTTGCGGCACAGAATTGCTGGGTCAAGAAGGGAGGTGCTTTCACCGGTG
AGATTAGTGCGGAAATGCTCGTCAATTTGGATATTCCTTGGGTCATTCTT
GGTCATTCTGAAAGGAGACTCATTTTGAATGAATCAAATGAGTTTGTTGG
GGATAAGGTTGCATATGCACTTTCTCAAGGTTTGAAGGTGATTGCTTGTG
TTGGTGAGACACTTGAGCAGCGTGAAGCAGGATCTACTATGGATGTTGTT
GCTGCACAAACTAAAGCAATCGCAGATCGAGTCTCAAGCTGGTCAAACAT
TGTTTTGGCCTATGAACCTGTGTGGGCTATTGGAACTGGGAAGGTTGCCA
CTCCAGTGCAGGCTCAAGAAGTACATTTTGAACTGAGGAAATGGCTTTTT
GCAAACACCAGTCCTGAAATTGCTGCAGCAACACGGATCATCTACGGAGG
ATCCGTAAATGGTGCAAACTGCAAGGAATTGGCTGCACAGCCTGATGTTG
ACGGATTTTTGGTTGGTGGTGCTTCGTTGAAGCCGGAGTTCATTGACATC
ATCAAATCTGCTGAGCTGAAGTAAATTCTTGAGCTTTATTTCAGGGCAGT
TTGCTGATGAGTATTACTGT
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