CX295733

Overview
NameCX295733
Unique NameCX295733
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length650
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX295733 vs. ExPASy Swiss-Prot
Match: XYLS_ECOLI (Alpha-xylosidase OS=Escherichia coli (strain K12) GN=yicI PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.649e-12
Identity = 53/196 (27.04%), Postives = 84/196 (42.86%), Query Frame = 3 
Query:   15 DFYFFAGPSPLAVVDQYTAFIGRPAPMPYWSLGFHQCRWGYHNL--SVVEDVVENYKKAKIPLDVIWNDDDHMDGHK--DFTLNPTNYPRPKLLAFLEKIHKIGMKYIVIIDPGIGVNSSYGVYQRGIANDVFIKY-EGEPYLAQVWPGAVNFPDFLNPKTVSWWGDEIR------------RFHELVPVDGLWID 551
            +++   GP+P AV+D+YT F GRPA  P WS G         N   + V   ++   +  +PL V   D   M   +  DF  +P  +P P+    + ++   G+K  V I+P IG  S   V++        +K  +G  +    W   +   DF NP    W+ D+++             F E +P D  W D
Sbjct:  238 EYFVIDGPTPKAVLDRYTRFTGRPALPPAWSFGLWLTTSFTTNYDEATVNSFIDGMAERNLPLHVFHFDCFWMKAFQWCDFEWDPLTFPDPE--GMIRRLKAKGLKICVWINPYIGQKSP--VFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDACKWYADKLKGLVAMGVDCFKTDFGERIPTDVQWFD 429
The following BLAST results are available for this feature:
BLAST of CX295733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
XYLS_ECOLI6.649e-1227.04Alpha-xylosidase OS=Escherichia coli (strain K12) ... [more]

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Properties
Property NameValue
Genbank descriptionC05075C11SK DroRLeaf1 Citrus clementina cDNA clone C05075C11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295733 ID=CX295733; Name=CX295733; organism=Citrus clementina; type=EST; length=650bp
TTGGGGGTGTTTTCGACTTTTACTTCTTCGCTGGGCCTTCACCGCTTGCT
GTTGTTGATCAGTATACAGCATTTATTGGGAGGCCTGCTCCTATGCCTTA
CTGGTCTCTAGGATTCCACCAGTGCAGATGGGGTTACCATAACCTGTCTG
TGGTCGAAGATGTTGTTGAGAACTACAAGAAGGCTAAAATTCCACTTGAT
GTGATCTGGAATGATGATGATCACATGGACGGACACAAGGATTTCACTCT
CAATCCTACCAACTATCCTCGTCCGAAGCTTTTGGCATTCCTTGAAAAAA
TACATAAAATAGGCATGAAATACATTGTCATTATTGACCCTGGAATTGGA
GTAAATTCTAGCTATGGTGTGTATCAAAGAGGTATAGCGAATGATGTTTT
CATCAAGTATGAGGGTGAACCCTACTTGGCTCAAGTTTGGCCTGGGGCTG
TCAATTTTCCTGACTTCCTCAATCCAAAAACCGTTTCATGGTGGGGTGAT
GAAATTCGCCGCTTTCATGAACTTGTCCCTGTAGATGGCTTGTGGATTGA
CATGAATGAAGCTTCAAATTTCTGTTCTGGACTTTGCAAAATACCTAAGG
GCAAGCAATGTCCAACTGGGACTGGACCCGGTTGGGTCTGTTGCTTGGAC
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