CX295734

Overview
NameCX295734
Unique NameCX295734
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length790
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig651 contig Ccv1_Contig651:254..1043. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295734 vs. ExPASy Swiss-Prot
Match: LRKA2_ARATH (Lectin-domain containing receptor kinase A4.2 OS=Arabidopsis thaliana GN=LECRKA4.2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.056e-11
Identity = 47/129 (36.43%), Postives = 72/129 (55.81%), Query Frame = 2
Query:  224 AVELDTYKN-DYWSDPDANHMGIDIANLTSN---PAKSLDSSG------IDLKSGRPIQVHIYYDGWTKILYVYVAYAG---NPLQKLIERPI-LLSETIPSSVYVGFTASTGPDFSESHQVLDWTFTT 568
            AVE DT +     +D   NH+G++  +LTS+   P    D+          L+SG PI+  + YDG T+ L + V  A     P++ LI RP+  LS+ +   +YVGFTA+TG D S +H V+ W+F++
Sbjct:  144 AVEFDTVQGFKDGADRTGNHIGLNFNSLTSDVQEPVVYYDNEDPNRKEDFPLQSGDPIRAILDYDGPTQTLNLTVYPANLKSRPVRPLISRPVPKLSQIVQEEMYVGFTAATGRDQSSAHYVMGWSFSS 272          
BLAST of CX295734 vs. ExPASy Swiss-Prot
Match: LECS_SOPJA (Seed lectin OS=Sophora japonica PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 6.056e-11
Identity = 56/198 (28.28%), Postives = 85/198 (42.93%), Query Frame = 2
Query:   26 GRVLYSQPVTAWP------AMISTTFTIRISPYPNTTDSADGMTFVFATDTSPPTEXXXXXXXXXXXXXXXX---------AVELDTYKNDYWSDPDANHMGIDIANLTSNPAKSLDSSGIDLKSGRPIQVHIYYDGWTKILYVYVAYAGNPLQKLIERPILLSETIPSSVYVGFTASTG--PDFSESHQVLDWTFTT 568
            GR LY  PV  W       A  +T+F+  +   P  + SADG+ F  A    PP                           AV+ DT+ N +  DP+  H+GID+ ++ S    +        ++G    V I Y   T+ L V + Y  +    ++   + L   +P  V VGFTA+TG    + E+H VL W+FT+
Sbjct:   85 GRALYYAPVHIWDKSTGRVASFATSFSFVVKA-PVASKSADGIAFFLA----PPNNQIQGPGGGHLGLFHSSGYNSSYQIIAVDFDTHINAW--DPNTRHIGIDVNSINSTKTVTWG-----WQNGEVANVLISYQAATETLTVSLTYPSSQTSYILSAAVDLKSILPEWVRVGFTAATGLTTQYVETHDVLSWSFTS 270          
The following BLAST results are available for this feature:
BLAST of CX295734 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
LRKA2_ARATH6.056e-1136.43Lectin-domain containing receptor kinase A4.2 OS=A... [more]
LECS_SOPJA6.056e-1128.28Seed lectin OS=Sophora japonica PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05075C12SK DroRLeaf1 Citrus clementina cDNA clone C05075C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295734 ID=CX295734; Name=CX295734; organism=Citrus clementina; type=EST; length=790bp
TTCGGCCGAGGCCGCTAAAAAGGTTGGACGGGTTTTATACAGCCAGCCTG
TGACTGCATGGCCAGCTATGATTAGTACCACCTTCACCATTAGGATCTCA
CCCTACCCAAATACAACGGATTCTGCAGATGGCATGACGTTTGTTTTTGC
AACCGATACCAGCCCTCCAACTGAAAACTCCGCCGGCGGAAATCTTGGAC
TGAGTAACGGTGTTTCGCAATTAGCCGTGGAGCTGGACACTTACAAGAAC
GACTACTGGTCTGATCCAGATGCTAACCATATGGGCATTGACATAGCAAA
CTTAACATCGAATCCAGCCAAGAGTCTCGACAGCTCTGGTATTGATCTCA
AAAGTGGAAGACCGATCCAGGTTCACATTTATTACGATGGATGGACGAAA
ATACTCTATGTTTATGTGGCATATGCGGGGAACCCACTTCAGAAGCTTAT
TGAAAGACCTATCCTCTTGTCAGAAACAATTCCAAGCTCAGTCTATGTTG
GCTTCACAGCATCCACAGGGCCCGACTTTTCAGAAAGCCATCAGGTGCTT
GATTGGACCTTCACAACGTTCCCATTGCCTTCTTCTTCTCTGGAGGAGCA
AAACCTGGCGATGCCAATATAATTCTAAACCGTCCTTGAAAAACCATGTC
ACATAAAAAATTATAATAAATAAAAATAACTAATATCGTCAATAAAGTGA
CATGGCTCTAGAAGCTGACTAAGATTAATATTGTTGGCTTGCTATCTGAG
ATGTTCTGCATGTACTTGTGTAGAAATGTCATATTCAGCT
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