CX295741

Overview
NameCX295741
Unique NameCX295741
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_ECO27 (Glycogen debranching enzyme OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=glgX PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 37/106 (34.91%), Postives = 59/106 (55.66%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G PTP GA     GVNF++FS++A    LC+   +  QE++             +GD+WH +L      + YGY+  G + P EGH F+P K+++DP A+ +
Sbjct:    3 QLAIGKPTPLGAHYDGQGVNFTLFSAHAERVELCVFDANG-QEHRY-------DLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQI 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_CITK8 (Glycogen debranching enzyme OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=glgX PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.250e-13
Identity = 38/106 (35.85%), Postives = 60/106 (56.60%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G  TP GAT    GVNF++FS++A    LC+    D   N+   ++       ++GDVWH +L      + YGY+  G + P +GH F+P K+++DP A+ V
Sbjct:    3 QLATGKATPHGATYDGHGVNFTLFSAHAERVELCVF---DALGNEQRYDLP-----GRSGDVWHGYLADARPGLRYGYRVHGPWQPAQGHRFNPAKLLIDPCARRV 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_SHIFL (Glycogen debranching enzyme OS=Shigella flexneri GN=glgX PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G P P GA     GVNF++FS++A    LC+   +  QE++             +GD+WH +L      + YGY+  G + P EGH F+P K+++DP A+ +
Sbjct:    3 QLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANG-QEHRY-------DLPGNSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQI 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_SHIF8 (Glycogen debranching enzyme OS=Shigella flexneri serotype 5b (strain 8401) GN=glgX PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G P P GA     GVNF++FS++A    LC+   +  QE++             +GD+WH +L      + YGY+  G + P EGH F+P K+++DP A+ +
Sbjct:    3 QLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANG-QEHRY-------DLPGNSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQI 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_ECOLU (Glycogen debranching enzyme OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=glgX PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G P P GA     GVNF++FS++A    LC+   +  QE++             +GD+WH +L      + YGY+  G + P EGH F+P K+++DP A+ +
Sbjct:    3 QLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCIFDANG-QEHRY-------DLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQI 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_SHIBS (Glycogen debranching enzyme OS=Shigella boydii serotype 4 (strain Sb227) GN=glgX PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G P P GA     GVNF++FS++A    LC+   +  QE++             +GD+WH +L      + YGY+  G + P EGH F+P K+++DP A+ +
Sbjct:    3 QLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANG-QEHRY-------DLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQI 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_ECOLI (Glycogen debranching enzyme OS=Escherichia coli (strain K12) GN=glgX PE=3 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G P P GA     GVNF++FS++A    LC+   +  QE++             +GD+WH +L      + YGY+  G + P EGH F+P K+++DP A+ +
Sbjct:    3 QLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANG-QEHRY-------DLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQI 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_ECODH (Glycogen debranching enzyme OS=Escherichia coli (strain K12 / DH10B) GN=glgX PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G P P GA     GVNF++FS++A    LC+   +  QE++             +GD+WH +L      + YGY+  G + P EGH F+P K+++DP A+ +
Sbjct:    3 QLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANG-QEHRY-------DLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQI 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_ECOBW (Glycogen debranching enzyme OS=Escherichia coli (strain K12 / BW2952) GN=glgX PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G P P GA     GVNF++FS++A    LC+   +  QE++             +GD+WH +L      + YGY+  G + P EGH F+P K+++DP A+ +
Sbjct:    3 QLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANG-QEHRY-------DLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQI 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_ECO8A (Glycogen debranching enzyme OS=Escherichia coli O8 (strain IAI1) GN=glgX PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G P P GA     GVNF++FS++A    LC+   +  QE++             +GD+WH +L      + YGY+  G + P EGH F+P K+++DP A+ +
Sbjct:    3 QLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANG-QEHRY-------DLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQI 100          
The following BLAST results are available for this feature:
BLAST of CX295741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
GLGX_ECO277.082e-1334.91Glycogen debranching enzyme OS=Escherichia coli O1... [more]
GLGX_CITK89.250e-1335.85Glycogen debranching enzyme OS=Citrobacter koseri ... [more]
GLGX_SHIFL2.061e-1233.96Glycogen debranching enzyme OS=Shigella flexneri G... [more]
GLGX_SHIF82.061e-1233.96Glycogen debranching enzyme OS=Shigella flexneri s... [more]
GLGX_ECOLU2.061e-1233.96Glycogen debranching enzyme OS=Escherichia coli O1... [more]
GLGX_SHIBS2.691e-1233.96Glycogen debranching enzyme OS=Shigella boydii ser... [more]
GLGX_ECOLI2.691e-1233.96Glycogen debranching enzyme OS=Escherichia coli (s... [more]
GLGX_ECODH2.691e-1233.96Glycogen debranching enzyme OS=Escherichia coli (s... [more]
GLGX_ECOBW2.691e-1233.96Glycogen debranching enzyme OS=Escherichia coli (s... [more]
GLGX_ECO8A2.691e-1233.96Glycogen debranching enzyme OS=Escherichia coli O8... [more]

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Properties
Property NameValue
Genbank descriptionC05075D07SK DroRLeaf1 Citrus clementina cDNA clone C05075D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295741 ID=CX295741; Name=CX295741; organism=Citrus clementina; type=EST; length=710bp
GAGGCCTGCTATCATGCTAGCTGTCGTCAATCATCATGAACTTTTAATTG
ATTTGTTCAAAGCTAAATGGAGTTGCTTCAATTCACTTCATCACCATTAC
TACACGGTTCTTCTAATTTCATCAACTCTCCAGAATTCTACAAGAGTAAG
CTGAGTAATTTGAAGAAGCCGCCAACGACGACGTTTCGATGTTGCAATCA
TCCGAATAAGACTAGTCATTTTGCAAATTCAAAAGCGTTTGAGAATGTGA
CTAAGAATTTGGTGATCAGAGCGAGCAAAAGTGCTGAGTTGGAGACTGCG
GTTATCGAGAAGCCTCCATCGCAGCGGTTTCAGGTTTCTAAAGGCTATCC
GACGCCGTTTGGCGCTACTCTTCGCGACGGCGGTGTCAATTTCTCTATCT
TCTCCAGCAATGCGGTTTCCGCTAGTCTTTGCTTGATTACTCTCTCGGAT
TTGCAAGAGAATAAGGTCACTGAAGAGATTGCTCTTGATTCTTTCGCTAA
TAAAACTGGAGATGTGTGGCATGTATTTCTCAAAGGAGACTTCAAAGATA
TGTTATATGGCTACAAATTCGACGGAAAGTTTTCTCCCCAAGAAGGACAT
TACTTTGACCCTACGAAGATAGTTCTGGATCCGTATGCAAAAGCAGTGAT
AAGCAGAGCACAATTTGGCGTTTTAGGGCCTGATGAAATTGCTGGCCTCA
ATGGCCTGCT
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