CX295741

Overview
NameCX295741
Unique NameCX295741
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7300 contig Ccv1_Contig7300:53..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_ECO7I (Glycogen debranching enzyme OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=glgX PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G P P GA     GVNF++FS++A    LC+   +  QE++             +GD+WH +L      + YGY+  G + P EGH F+P K+++DP A+ +
Sbjct:    3 QLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANG-QEHRY-------DLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQI 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_ECO5E (Glycogen debranching enzyme OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=glgX PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G P P GA     GVNF++FS++A    LC+   +  QE++             +GD+WH +L      + YGY+  G + P EGH F+P K+++DP A+ +
Sbjct:    3 QLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANG-QEHRY-------DLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQI 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_ECO57 (Glycogen debranching enzyme OS=Escherichia coli O157:H7 GN=glgX PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G P P GA     GVNF++FS++A    LC+   +  QE++             +GD+WH +L      + YGY+  G + P EGH F+P K+++DP A+ +
Sbjct:    3 QLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANG-QEHRY-------DLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQI 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_ECO55 (Glycogen debranching enzyme OS=Escherichia coli (strain 55989 / EAEC) GN=glgX PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G P P GA     GVNF++FS++A    LC+   +  QE++             +GD+WH +L      + YGY+  G + P EGH F+P K+++DP A+ +
Sbjct:    3 QLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANG-QEHRY-------DLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQI 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_ECO24 (Glycogen debranching enzyme OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=glgX PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.691e-12
Identity = 36/106 (33.96%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G P P GA     GVNF++FS++A    LC+   +  QE++             +GD+WH +L      + YGY+  G + P EGH F+P K+++DP A+ +
Sbjct:    3 QLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANG-QEHRY-------DLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQI 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_KLEP3 (Glycogen debranching enzyme OS=Klebsiella pneumoniae (strain 342) GN=glgX PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 37/105 (35.24%), Postives = 59/105 (56.19%), Query Frame = 1
Query:  334 VSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            ++ G P P GA+    GVNF++FS++A    LC+    D Q N+   ++       ++GD+WH +L      + YGY+  G + P +GH F+P K++LDP A  V
Sbjct:    4 LAAGKPAPLGASYDGKGVNFALFSAHAERVELCVF---DEQGNEQRVDLPA-----RSGDIWHGWLDAAGPGLRYGYRVHGPWDPAQGHRFNPAKLLLDPCAYRV 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_SHIB3 (Glycogen debranching enzyme OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=glgX PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 35/106 (33.02%), Postives = 58/106 (54.72%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G P P GA     GVNF++FS++A    LC+   +  QE++             +GD+WH +L      + YGY+  G + P +GH F+P K+++DP A+ +
Sbjct:    3 QLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANG-QEHRY-------DLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPADGHRFNPAKLLIDPCARQI 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_KLEP7 (Glycogen debranching enzyme OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=glgX PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 36/105 (34.29%), Postives = 59/105 (56.19%), Query Frame = 1
Query:  334 VSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            ++ G P P GA+    GVNF++FS++A    LC+    D Q N+   ++       ++GD+WH +L      + YGY+  G + P +GH F+P K+++DP A  V
Sbjct:    4 LAAGKPAPLGASYDGKGVNFALFSAHAERVELCVF---DEQGNEQRFDLPA-----RSGDIWHGWLAAAGPGLRYGYRVHGPWDPAQGHRFNPAKLLIDPSAHRV 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_ECOLC (Glycogen debranching enzyme OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=glgX PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 36/106 (33.96%), Postives = 57/106 (53.77%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G P P GA     GVNF++FS +A    LC+   +  QE++             +GD+WH +L      + YGY+  G + P EGH F+P K+++DP A+ +
Sbjct:    3 QLAIGKPAPLGAHYDGQGVNFTLFSVHAERVELCVFDANG-QEHRY-------DLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQI 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_ECOHS (Glycogen debranching enzyme OS=Escherichia coli O9:H4 (strain HS) GN=glgX PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.996e-12
Identity = 36/106 (33.96%), Postives = 57/106 (53.77%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G P P GA     GVNF++FS +A    LC+   +  QE++             +GD+WH +L      + YGY+  G + P EGH F+P K+++DP A+ +
Sbjct:    3 QLAIGKPAPLGAHYDGQGVNFTLFSVHAERVELCVFDANG-QEHRY-------DLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQI 100          
The following BLAST results are available for this feature:
BLAST of CX295741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
GLGX_ECO7I2.691e-1233.96Glycogen debranching enzyme OS=Escherichia coli O7... [more]
GLGX_ECO5E2.691e-1233.96Glycogen debranching enzyme OS=Escherichia coli O1... [more]
GLGX_ECO572.691e-1233.96Glycogen debranching enzyme OS=Escherichia coli O1... [more]
GLGX_ECO552.691e-1233.96Glycogen debranching enzyme OS=Escherichia coli (s... [more]
GLGX_ECO242.691e-1233.96Glycogen debranching enzyme OS=Escherichia coli O1... [more]
GLGX_KLEP33.515e-1235.24Glycogen debranching enzyme OS=Klebsiella pneumoni... [more]
GLGX_SHIB35.996e-1233.02Glycogen debranching enzyme OS=Shigella boydii ser... [more]
GLGX_KLEP75.996e-1234.29Glycogen debranching enzyme OS=Klebsiella pneumoni... [more]
GLGX_ECOLC5.996e-1233.96Glycogen debranching enzyme OS=Escherichia coli (s... [more]
GLGX_ECOHS5.996e-1233.96Glycogen debranching enzyme OS=Escherichia coli O9... [more]

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Properties
Property NameValue
Genbank descriptionC05075D07SK DroRLeaf1 Citrus clementina cDNA clone C05075D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295741 ID=CX295741; Name=CX295741; organism=Citrus clementina; type=EST; length=710bp
GAGGCCTGCTATCATGCTAGCTGTCGTCAATCATCATGAACTTTTAATTG
ATTTGTTCAAAGCTAAATGGAGTTGCTTCAATTCACTTCATCACCATTAC
TACACGGTTCTTCTAATTTCATCAACTCTCCAGAATTCTACAAGAGTAAG
CTGAGTAATTTGAAGAAGCCGCCAACGACGACGTTTCGATGTTGCAATCA
TCCGAATAAGACTAGTCATTTTGCAAATTCAAAAGCGTTTGAGAATGTGA
CTAAGAATTTGGTGATCAGAGCGAGCAAAAGTGCTGAGTTGGAGACTGCG
GTTATCGAGAAGCCTCCATCGCAGCGGTTTCAGGTTTCTAAAGGCTATCC
GACGCCGTTTGGCGCTACTCTTCGCGACGGCGGTGTCAATTTCTCTATCT
TCTCCAGCAATGCGGTTTCCGCTAGTCTTTGCTTGATTACTCTCTCGGAT
TTGCAAGAGAATAAGGTCACTGAAGAGATTGCTCTTGATTCTTTCGCTAA
TAAAACTGGAGATGTGTGGCATGTATTTCTCAAAGGAGACTTCAAAGATA
TGTTATATGGCTACAAATTCGACGGAAAGTTTTCTCCCCAAGAAGGACAT
TACTTTGACCCTACGAAGATAGTTCTGGATCCGTATGCAAAAGCAGTGAT
AAGCAGAGCACAATTTGGCGTTTTAGGGCCTGATGAAATTGCTGGCCTCA
ATGGCCTGCT
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