CX295741

Overview
NameCX295741
Unique NameCX295741
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig7300 contig Ccv1_Contig7300:53..762. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_SHISS (Glycogen debranching enzyme OS=Shigella sonnei (strain Ss046) GN=glgX PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 35/102 (34.31%), Postives = 55/102 (53.92%), Query Frame = 1
Query:  343 GYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            G P P GA     GVNF++FS++A    LC+   +  QE++             +GD+WH +L      + YGY+  G + P EGH F+P K+++DP A+ +
Sbjct:    7 GKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANG-QEHRY-------DLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQI 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_SHIDS (Glycogen debranching enzyme OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=glgX PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 34/106 (32.08%), Postives = 55/106 (51.89%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G P P GA     GVNF++FS++A    LC+   +  +                +GD+WH +L      + YGY+  G + P EGH F+P K+++DP A+ +
Sbjct:    3 QLAIGKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANGHEHRY--------DLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQI 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_ECOSE (Glycogen debranching enzyme OS=Escherichia coli (strain SE11) GN=glgX PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 35/102 (34.31%), Postives = 55/102 (53.92%), Query Frame = 1
Query:  343 GYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            G P P GA     GVNF++FS++A    LC+   +  QE++             +GD+WH +L      + YGY+  G + P EGH F+P K+++DP A+ +
Sbjct:    7 GKPAPLGAHYDGQGVNFTLFSAHAERVELCVFDANG-QEHRY-------DLPGHSGDIWHGYLPDARPGLRYGYRVHGPWQPAEGHRFNPAKLLIDPCARQI 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_ERWCH (Glycogen debranching enzyme OS=Erwinia chrysanthemi GN=glgX PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.023e-11
Identity = 36/100 (36.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:  343 GYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAK 642
            G P P G+     GVNF++FSS A    LC+     L+E ++           +TGD+WH +L      + YGY+ DG F P  G  F+  K++LDP A+
Sbjct:    7 GRPRPLGSHFDGEGVNFALFSSGASRVELCIF--DGLREQRLP-------LTARTGDIWHGYLPDAQPGLCYGYRVDGAFDPSRGQRFNANKLLLDPCAR 97          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_ERWT9 (Glycogen debranching enzyme OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=glgX PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.744e-11
Identity = 39/105 (37.14%), Postives = 55/105 (52.38%), Query Frame = 1
Query:  334 VSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            +  G P P GA+    GVNFS+FS  A    LCL     +       E  LD  A+ +GD+WH +L        YGY+  G + PQ+G  F+P K++LDP A+ +
Sbjct:    4 IRDGQPAPRGASYDGKGVNFSLFSQRAERVELCLYDDDGV-------ETRLDLPAH-SGDIWHGYLPAVRPGQRYGYRVHGPWQPQQGLRFNPAKLLLDPCARGI 100          
BLAST of CX295741 vs. ExPASy Swiss-Prot
Match: GLGX_ENT38 (Glycogen debranching enzyme OS=Enterobacter sp. (strain 638) GN=glgX PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 34/106 (32.08%), Postives = 59/106 (55.66%), Query Frame = 1
Query:  331 QVSKGYPTPFGATLRDGGVNFSIFSSNAVSASLCLITLSDLQENKVTEEIALDSFANKTGDVWHVFLKGDFKDMLYGYKFDGKFSPQEGHYFDPTKIVLDPYAKAV 648
            Q++ G P P GA+    GVNF++FS++A    LC+    D + N+   ++       + GD+WH +L+     + YG++  G + P+ G  F+P K+++DP A  V
Sbjct:    3 QLTAGKPAPLGASFDGKGVNFTLFSAHAERVELCVF---DREGNEYRYDLPA-----REGDIWHGYLEDGKPGLRYGFRVHGPWQPEYGLRFNPAKLLIDPCALRV 100          
The following BLAST results are available for this feature:
BLAST of CX295741 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
GLGX_SHISS7.830e-1234.31Glycogen debranching enzyme OS=Shigella sonnei (st... [more]
GLGX_SHIDS7.830e-1232.08Glycogen debranching enzyme OS=Shigella dysenteria... [more]
GLGX_ECOSE7.830e-1234.31Glycogen debranching enzyme OS=Escherichia coli (s... [more]
GLGX_ERWCH1.023e-1136.00Glycogen debranching enzyme OS=Erwinia chrysanthem... [more]
GLGX_ERWT91.744e-1137.14Glycogen debranching enzyme OS=Erwinia tasmaniensi... [more]
GLGX_ENT386.629e-1132.08Glycogen debranching enzyme OS=Enterobacter sp. (s... [more]

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Properties
Property NameValue
Genbank descriptionC05075D07SK DroRLeaf1 Citrus clementina cDNA clone C05075D07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295741 ID=CX295741; Name=CX295741; organism=Citrus clementina; type=EST; length=710bp
GAGGCCTGCTATCATGCTAGCTGTCGTCAATCATCATGAACTTTTAATTG
ATTTGTTCAAAGCTAAATGGAGTTGCTTCAATTCACTTCATCACCATTAC
TACACGGTTCTTCTAATTTCATCAACTCTCCAGAATTCTACAAGAGTAAG
CTGAGTAATTTGAAGAAGCCGCCAACGACGACGTTTCGATGTTGCAATCA
TCCGAATAAGACTAGTCATTTTGCAAATTCAAAAGCGTTTGAGAATGTGA
CTAAGAATTTGGTGATCAGAGCGAGCAAAAGTGCTGAGTTGGAGACTGCG
GTTATCGAGAAGCCTCCATCGCAGCGGTTTCAGGTTTCTAAAGGCTATCC
GACGCCGTTTGGCGCTACTCTTCGCGACGGCGGTGTCAATTTCTCTATCT
TCTCCAGCAATGCGGTTTCCGCTAGTCTTTGCTTGATTACTCTCTCGGAT
TTGCAAGAGAATAAGGTCACTGAAGAGATTGCTCTTGATTCTTTCGCTAA
TAAAACTGGAGATGTGTGGCATGTATTTCTCAAAGGAGACTTCAAAGATA
TGTTATATGGCTACAAATTCGACGGAAAGTTTTCTCCCCAAGAAGGACAT
TACTTTGACCCTACGAAGATAGTTCTGGATCCGTATGCAAAAGCAGTGAT
AAGCAGAGCACAATTTGGCGTTTTAGGGCCTGATGAAATTGCTGGCCTCA
ATGGCCTGCT
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