CX295750

Overview
NameCX295750
Unique NameCX295750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB8B_HUMAN (Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8B PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 4.702e-43
Identity = 84/191 (43.98%), Postives = 124/191 (64.92%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSAVPSKERK 634
            YDYLFK++LIGDSGVGK+ LL RF+ + F+    STIG++F  R++ +DGK IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N++ W+R + +H   ++  M++GNK D+     VS E G+  A    + F+ETSA  + NV+ AF  +   I   +++K  ++        V   E +
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLETSAKSSANVEEAFFTLARDIMTKLNRKMNDSNSAGAGGPVKITENR 195          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB8A_RAT (Ras-related protein Rab-8A OS=Rattus norvegicus GN=Rab8a PE=2 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 4.702e-43
Identity = 91/203 (44.83%), Postives = 130/203 (64.04%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNS---AVPSKERKLMSVKMCLL 661
            YDYLFK++LIGDSGVGK+ +L RF+ + F+    STIG++F  R++ +DGK IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W+R + +H   ++  M++GNK D+     VS E G+  A    + FMETSA    NV+NAF  +   I   + KK +E     G+S    +  +++K  S   C L
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK-LEGNSPQGSSHGVKITVEQQKRTSFFRCSL 206          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB8A_MOUSE (Ras-related protein Rab-8A OS=Mus musculus GN=Rab8a PE=1 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 4.702e-43
Identity = 91/203 (44.83%), Postives = 130/203 (64.04%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNS---AVPSKERKLMSVKMCLL 661
            YDYLFK++LIGDSGVGK+ +L RF+ + F+    STIG++F  R++ +DGK IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N+  W+R + +H   ++  M++GNK D+     VS E G+  A    + FMETSA    NV+NAF  +   I   + KK +E     G+S    +  +++K  S   C L
Sbjct:    5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKK-LEGNSPQGSSHGVKITVEQQKRTSFFRCSL 206          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB1B_PIG (Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.702e-43
Identity = 89/179 (49.72%), Postives = 120/179 (67.04%), Query Frame = 2
Query:   59 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGE 595
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R++ +DGK IK QIWDTAGQER R ITS+YYRGA G ++VYDVT   ++ NV++WL+E+  +   N+  +L+GNKSDL     V     K FA+   + F+ETSA  ATNV+ AF  +  +I + +   A   GE
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERGRTITSSYYRGAHGIIVVYDVTDQESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKRMGPGAASGGE 182          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB8B_BOVIN (Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.140e-43
Identity = 88/202 (43.56%), Postives = 127/202 (62.87%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSAVPSKER--KLMSVKMCLL 661
            YDYLFK++LIGDSGVGK+ LL RF+ + F+    STIG++F  R++ +DGK IK QIWDTAGQER+R IT+AYYRGA+G +LVYD+T   +F+N++ W+R + +H   ++  M++GNK D+     VS E G+  A    + F+E SA  + NV+ AF  +   I   +++K  ++        V   E   K  S   CLL
Sbjct:    5 YDYLFKLLLIGDSGVGKTCLLFRFSEDAFNTTFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIKNWIRNIEEHASSDVERMILGNKCDMNDKRQVSKERGEKLAIDYGIKFLEASAKSSMNVEEAFFTLARDIMTKLNRKMNDSNSSGAGGPVKITENRSKKTSFFRCLL 206          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: YPT1_YEAST (GTP-binding protein YPT1 OS=Saccharomyces cerevisiae GN=YPT1 PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 8.020e-43
Identity = 86/187 (45.99%), Postives = 130/187 (69.52%), Query Frame = 2
Query:   59 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAM----ETGEDVGN 607
            +YDYLFK++LIG+SGVGKS LL RF+ + ++ +  STIGV+F  +++ +DGK +K QIWDTAGQER+R ITS+YYRG+ G ++VYDVT   +F  V+ WL+E+  +    ++ +L+GNK DL+    V  +  K FA+   + F+ETSAL++TNV++AF  +  QI   +S++ +    +  ED GN
Sbjct:    4 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMSQQNLNETTQKKEDKGN 190          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.787e-42
Identity = 86/171 (50.29%), Postives = 115/171 (67.25%), Query Frame = 2
Query:   47 RAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDL-RHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQI 556
            RA  DYDYL K++LIGDSGVGKS LL RF+   F+    +TIG++F  R++ +DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYDVT  S+F N+  W+R +  H   N+  +L+GNK+D+     AV T  G++ A++  + F ETSA    NV+  F  +   I
Sbjct:    7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSIARDI 177          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB4B_RAT (Ras-related protein Rab-4B OS=Rattus norvegicus GN=Rab4b PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.047e-42
Identity = 83/160 (51.88%), Postives = 110/160 (68.75%), Query Frame = 2
Query:   56 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAF 535
            + YD+LFK ++IG +G GKS LL +F  N+F  +S  TIGVEF +R +NV GK +K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+ ++  WL + R    PNIVV+L GNK DL     V+  +   FA++  L F+ETSAL   NV+ AF
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 162          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB4B_MOUSE (Ras-related protein Rab-4B OS=Mus musculus GN=Rab4b PE=2 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 3.047e-42
Identity = 83/160 (51.88%), Postives = 110/160 (68.75%), Query Frame = 2
Query:   56 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAF 535
            + YD+LFK ++IG +G GKS LL +F  N+F  +S  TIGVEF +R +NV GK +K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+ ++  WL + R    PNIVV+L GNK DL     V+  +   FA++  L F+ETSAL   NV+ AF
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 162          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB4B_HUMAN (Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4B PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.047e-42
Identity = 83/160 (51.88%), Postives = 110/160 (68.75%), Query Frame = 2
Query:   56 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAF 535
            + YD+LFK ++IG +G GKS LL +F  N+F  +S  TIGVEF +R +NV GK +K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+ ++  WL + R    PNIVV+L GNK DL     V+  +   FA++  L F+ETSAL   NV+ AF
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 162          
The following BLAST results are available for this feature:
BLAST of CX295750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB8B_HUMAN4.702e-4343.98Ras-related protein Rab-8B OS=Homo sapiens GN=RAB8... [more]
RAB8A_RAT4.702e-4344.83Ras-related protein Rab-8A OS=Rattus norvegicus GN... [more]
RAB8A_MOUSE4.702e-4344.83Ras-related protein Rab-8A OS=Mus musculus GN=Rab8... [more]
RAB1B_PIG4.702e-4349.72Ras-related protein Rab-1B OS=Sus scrofa GN=RAB1B ... [more]
RAB8B_BOVIN6.140e-4343.56Ras-related protein Rab-8B OS=Bos taurus GN=RAB8B ... [more]
YPT1_YEAST8.020e-4345.99GTP-binding protein YPT1 OS=Saccharomyces cerevisi... [more]
RB1BV_BETVU1.787e-4250.29Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
RAB4B_RAT3.047e-4251.88Ras-related protein Rab-4B OS=Rattus norvegicus GN... [more]
RAB4B_MOUSE3.047e-4251.88Ras-related protein Rab-4B OS=Mus musculus GN=Rab4... [more]
RAB4B_HUMAN3.047e-4251.88Ras-related protein Rab-4B OS=Homo sapiens GN=RAB4... [more]

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Properties
Property NameValue
Genbank descriptionC05075E05SK DroRLeaf1 Citrus clementina cDNA clone C05075E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295750 ID=CX295750; Name=CX295750; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAGTGTGAAGATATAAAGTTGCAATAGCTATGGCTGGATACAGAG
CTGAAGATGACTATGATTATCTTTTTAAGGTGGTTTTGATCGGTGACTCC
GGTGTCGGCAAGTCCAATTTGCTTTCGAGGTTCACTAGGAACGAGTTTAG
TCTCGAGTCTAAGTCCACAATAGGTGTTGAGTTCGCTACTCGTAGCTTGA
ATGTCGATGGCAAAGTCATCAAAGCTCAGATTTGGGACACCGCCGGCCAA
GAAAGGTACCGTGCCATAACCAGTGCATACTACCGAGGAGCTGTCGGGGC
ACTTCTAGTGTATGACGTCACTCGGCATTCCACATTTGAAAATGTGGAAA
GGTGGTTAAGGGAGTTGAGGGATCACACAGATCCCAACATTGTGGTTATG
CTCATTGGTAATAAATCGGATCTCCGTCACCTGGTGGCTGTCTCAACAGA
GGACGGGAAATCATTTGCTGAGAAGGAATCTCTCTTCTTCATGGAAACTT
CTGCTCTGGAGGCTACTAATGTGGACAATGCATTTGCTGAAGTGCTGACT
CAAATCTACCGTATTGTGAGCAAGAAGGCCATGGAGACAGGTGAGGATGT
AGGAAATTCTGCTGTACCTTCCAAGGAGAGAAAATTGATGTCAGTAAAGA
TGTGTCTGCTGTGAAGAAGGTGGCTGCTGCTCACT
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