CX295750

Overview
NameCX295750
Unique NameCX295750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1753 contig Ccv1_Contig1753:10..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB4B_CANFA (Ras-related protein Rab-4B OS=Canis familiaris GN=RAB4B PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.047e-42
Identity = 83/160 (51.88%), Postives = 110/160 (68.75%), Query Frame = 2
Query:   56 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAF 535
            + YD+LFK ++IG +G GKS LL +F  N+F  +S  TIGVEF +R +NV GK +K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+ ++  WL + R    PNIVV+L GNK DL     V+  +   FA++  L F+ETSAL   NV+ AF
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 162          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: ARA3_ARATH (Ras-related protein ARA-3 OS=Arabidopsis thaliana GN=ARA-3 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.047e-42
Identity = 85/167 (50.90%), Postives = 114/167 (68.26%), Query Frame = 2
Query:   47 RAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDL-RHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEV 544
            RA  DYDYL K++LIGDSGVGKS LL RF+   F+    +TIG++F  R++ +DGK IK QIWDTAGQER+R IT+AYYRGA+G LLVYDVT  S+F N+  W+R +  H   N+  +L+GNK+D+     AV T  G++ A++  + F ETSA    NV+  F  +
Sbjct:    7 RARADYDYLIKLLLIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVFFSI 173          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB8A_DICDI (Ras-related protein Rab-8A OS=Dictyostelium discoideum GN=rab8A PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 3.980e-42
Identity = 83/165 (50.30%), Postives = 113/165 (68.48%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQI 556
            YDYL K++LIGDSGVGKS LL RF+ + F+    +TIG++F  R++ ++GK IK QIWDTAGQER+R IT+AYYRGA+G LLVYDVT   +F N+  W+R +  H   ++  MLIGNK D+     V +  GKS A++  + F+ETSA  + NV+ AF  +   I
Sbjct:   12 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGNIRNWIRNIEQHATDSVNKMLIGNKCDMAEKKVVDSSRGKSLADEYGIKFLETSAKNSINVEEAFISLAKDI 176          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB4B_DANRE (Ras-related protein Rab-4B OS=Danio rerio GN=rab4b PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 6.789e-42
Identity = 83/167 (49.70%), Postives = 111/167 (66.47%), Query Frame = 2
Query:   56 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQI 556
            + YD+LFK ++IG +G GKS LL +F  N+F  +S  TIGVEF +R +NV GK +K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R    PNIV++L GNK DL     V+  +   FA++  L F+ETSAL   NV+ AF +    I
Sbjct:    3 ETYDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARTLASPNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARSI 169          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB1C_HUMAN (Putative Ras-related protein Rab-1C OS=Homo sapiens GN=RAB1C PE=5 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 6.789e-42
Identity = 88/178 (49.44%), Postives = 118/178 (66.29%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGE 595
            YD LFK++LIGDSGVGKS LL RF  + ++    STIGV+F  +++ +DGK IK QIWDTAGQER+  ITS+YYRGA G L+VYDVT   ++ NV++WL+E+  H   N+  +L+GNKSDL     V     K FA+   + F+ETSA  ATNV+ AF  +  +I + +   A   GE
Sbjct:    5 YDCLFKLLLIGDSGVGKSCLLLRFADDPYTESYISTIGVDFKIQTIELDGKTIKLQIWDTAGQERFWTITSSYYRGAHGFLVVYDVTDQESYANVKQWLQEIDRHASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEIKKQMGPGAASGGE 182          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 169.474 bits (428), Expect = 1.512e-41
Identity = 87/188 (46.28%), Postives = 126/188 (67.02%), Query Frame = 2
Query:   56 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSAVP 619
            ++YDYLFK++LIGDS VGKS LL RF  + +     STIGV+F  R++  DGK IK QIWDTAGQER+R ITS+YYRGA G ++VYD T   +F NV++WL E+  + + ++  +LIGNK+D+     VSTE G++ A++  + F+ETSA ++ NV+ AF  +  +I     KK M +  +   ++ P
Sbjct:    3 NEYDYLFKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEI-----KKKMGSQTNANKTSGP 185          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 169.088 bits (427), Expect = 1.975e-41
Identity = 84/166 (50.60%), Postives = 115/166 (69.28%), Query Frame = 2
Query:   59 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQI 556
            ++D+ FK++LIGDSGVGKS LL RF  + ++    STIGV+F  ++LN+DGK IK QIWDTAGQER+R ITS+YYRGA G +LVYD T   +F NV++W+ E+  +   N+  +L+GNK+DL +   V +   KSFAE   + F+ETSA  ATNV+  F  +   I
Sbjct:    6 EHDFFFKILLIGDSGVGKSCLLLRFADDSWTDTHISTIGVDFKIKTLNLDGKTIKLQIWDTAGQERFRTITSSYYRGAQGIILVYDCTDQDSFTNVKQWMGEIDRYACENVNKLLVGNKTDLVNEKVVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDI 171          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.401e-41
Identity = 86/184 (46.74%), Postives = 118/184 (64.13%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSA 613
            YDYL K++LIGDSGVGKS LL RF+ + F+    +TIG++F  R++ +DGK IK QIWDTAGQER+R IT+AYYRGA+G LL+YDVT   +F+NV  W   +  H   N+  +LIGNK D      VS E G++ A++  + F+E SA    NVD AF      + R + K+ ++   +  N A
Sbjct:    6 YDYLIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAF----FTLAREIKKQKIDAENEFSNQA 185          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: YPT1_NEUCR (GTP-binding protein ypt1 OS=Neurospora crassa GN=ypt-1 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.401e-41
Identity = 84/166 (50.60%), Postives = 114/166 (68.67%), Query Frame = 2
Query:   59 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQI 556
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R++ +DGK +K QIWDTAGQER+R ITS+YYRGA G  +VYDVT   +F NV++WL+E+  +    +  +L+GNKSD+     V     K FA+   + F+ETSA  A+NV+ AF  +  QI
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGICVVYDVTDMDSFNNVKQWLQEIDRYATEGVNKLLVGNKSDMTDKKVVEYTVAKEFADSLGIPFLETSAKNASNVEQAFLTMARQI 169          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB19_MOUSE (Ras-related protein Rab-19 OS=Mus musculus GN=Rab19 PE=2 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 4.401e-41
Identity = 82/163 (50.31%), Postives = 112/163 (68.71%), Query Frame = 2
Query:   50 AEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLF-FMETSALEATNVDNAF 535
            ++++ DYLFKV+LIGDS VGK+ ++  F    +S   ++TIGV+F  RSL +DGK +K Q+WDTAGQER+R IT +YYR A  A++ YD+TR STFE+V  W+ E+  +   N+V+MLIGNKSDL     V  ED  + AEK  L   +ETSA E+ N+D  F
Sbjct:   10 SDENVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKRHVLFEDACTLAEKHGLLAVLETSAKESRNIDEVF 172          
The following BLAST results are available for this feature:
BLAST of CX295750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB4B_CANFA3.047e-4251.88Ras-related protein Rab-4B OS=Canis familiaris GN=... [more]
ARA3_ARATH3.047e-4250.90Ras-related protein ARA-3 OS=Arabidopsis thaliana ... [more]
RAB8A_DICDI3.980e-4250.30Ras-related protein Rab-8A OS=Dictyostelium discoi... [more]
RAB4B_DANRE6.789e-4249.70Ras-related protein Rab-4B OS=Danio rerio GN=rab4b... [more]
RAB1C_HUMAN6.789e-4249.44Putative Ras-related protein Rab-1C OS=Homo sapien... [more]
RABD1_ARATH1.512e-4146.28Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB1D_DICDI1.975e-4150.60Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
YPT2_SCHPO4.401e-4146.74GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
YPT1_NEUCR4.401e-4150.60GTP-binding protein ypt1 OS=Neurospora crassa GN=y... [more]
RAB19_MOUSE4.401e-4150.31Ras-related protein Rab-19 OS=Mus musculus GN=Rab1... [more]

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Properties
Property NameValue
Genbank descriptionC05075E05SK DroRLeaf1 Citrus clementina cDNA clone C05075E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295750 ID=CX295750; Name=CX295750; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAGTGTGAAGATATAAAGTTGCAATAGCTATGGCTGGATACAGAG
CTGAAGATGACTATGATTATCTTTTTAAGGTGGTTTTGATCGGTGACTCC
GGTGTCGGCAAGTCCAATTTGCTTTCGAGGTTCACTAGGAACGAGTTTAG
TCTCGAGTCTAAGTCCACAATAGGTGTTGAGTTCGCTACTCGTAGCTTGA
ATGTCGATGGCAAAGTCATCAAAGCTCAGATTTGGGACACCGCCGGCCAA
GAAAGGTACCGTGCCATAACCAGTGCATACTACCGAGGAGCTGTCGGGGC
ACTTCTAGTGTATGACGTCACTCGGCATTCCACATTTGAAAATGTGGAAA
GGTGGTTAAGGGAGTTGAGGGATCACACAGATCCCAACATTGTGGTTATG
CTCATTGGTAATAAATCGGATCTCCGTCACCTGGTGGCTGTCTCAACAGA
GGACGGGAAATCATTTGCTGAGAAGGAATCTCTCTTCTTCATGGAAACTT
CTGCTCTGGAGGCTACTAATGTGGACAATGCATTTGCTGAAGTGCTGACT
CAAATCTACCGTATTGTGAGCAAGAAGGCCATGGAGACAGGTGAGGATGT
AGGAAATTCTGCTGTACCTTCCAAGGAGAGAAAATTGATGTCAGTAAAGA
TGTGTCTGCTGTGAAGAAGGTGGCTGCTGCTCACT
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