CX295750

Overview
NameCX295750
Unique NameCX295750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: YPT1_SCHPO (GTP-binding protein ypt1 OS=Schizosaccharomyces pombe GN=ypt1 PE=1 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 5.747e-41
Identity = 83/166 (50.00%), Postives = 116/166 (69.88%), Query Frame = 2
Query:   59 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQI 556
            +YDYLFK++LIGDSGVGKS LL RF  + ++    STIGV+F  R+  ++GK +K QIWDTAGQER+R ITS+YYRGA G ++VYDVT   +F NV++WL+E+  +    +  +L+GNKSD+     V     K FA+  ++ F+ETSA ++TNV+ AF  +  QI
Sbjct:    4 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTFELEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQDSFNNVKQWLQEIDRYAVEGVNRLLVGNKSDMVDKKVVEYSVAKEFADSLNIPFLETSAKDSTNVEQAFLTMSRQI 169          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.747e-41
Identity = 84/179 (46.93%), Postives = 118/179 (65.92%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGED 598
            YD+L K++LIGDSGVGKS LL RF+   F+    +TIG++F  R++ ++GK IK QIWDTAGQER+R IT+AYYRGA+G LLVYDVT   +F ++  W+R +  H   ++  MLIGNK D+     V +  GKS A++  + F+ETSA  + NV+ AF  +   I     K+ ++T  D
Sbjct:   12 YDFLVKLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTEKKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDI----KKRMIDTPND 186          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB43_HUMAN (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.747e-41
Identity = 82/169 (48.52%), Postives = 118/169 (69.82%), Query Frame = 2
Query:   53 EDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEK-ESLFFMETSALEATNVDNAFAEVLTQI 556
            ++ YD+LFK+VL+GD+ VGK+ ++ RF    FS    STIGV+F  ++L + GK +K QIWDTAGQER+R IT +YYR A GA+L YD+T+ S+F +V  W+ ++R +   NIV +LIGNKSDL  L  VS  + +S AE  + L  +ETSA +++NV+ AF  V T++
Sbjct:   12 DEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 180          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB19_RAT (Ras-related protein Rab-19 OS=Rattus norvegicus GN=Rab19 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.506e-41
Identity = 83/167 (49.70%), Postives = 112/167 (67.07%), Query Frame = 2
Query:   38 AGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLF-FMETSALEATNVDNAF 535
            A    +++ DYLFKV+LIGDS VGK+ ++  F    +S   ++TIGV+F  RSL +DGK +K Q+WDTAGQER+R IT +YYR A  A++ YD+TR STFE+V  W+ E+  +   N+V+MLIGNKSDL     V  ED  + AEK  L   +ETSA E+ N+D  F
Sbjct:    6 AARTVDENVDYLFKVILIGDSNVGKTCVVQHFKSGVYSESQQNTIGVDFTVRSLEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKSDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESRNIDEVF 172          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.803e-41
Identity = 84/198 (42.42%), Postives = 126/198 (63.64%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSAVPSKERKLMSVKMC 655
            YD L K++LIGDSGVGKS LL RF  ++F+    +TIG++F  R++++  + +K Q+WDTAGQER+R IT+AYYRGA+G LLVYDVT   +F N+E W + ++ + +  + ++L+GNK DL     VSTE G++ A+K  + F+E S+    NV+  F  V T+I   V+K     G + G+  +   E +  S   C
Sbjct:    8 YDLLIKLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRIRDTVAK---TKGNESGSGGINIAEGEENSASKC 202          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 9.803e-41
Identity = 80/179 (44.69%), Postives = 122/179 (68.16%), Query Frame = 2
Query:   41 GYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKK 577
            G  +  +YD L K+++IGDSGVGKS +L RF  N F+    STIGV+F  R++ +DGK IK QIWDTAGQER++ IT++YYRGA G ++VYD+T   +F +++RWL ++     P+++ +++GNK DL    AV  +  K FA++ ++  METSA E+T +D AF ++ + I +   +K
Sbjct:   23 GSESHPEYDMLLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLNSKRAVDFKIAKKFADELNIPIMETSAKESTAIDEAFIKLASDIKKSTPQK 201          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB13_MOUSE (Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.280e-40
Identity = 76/191 (39.79%), Postives = 123/191 (64.40%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSAVPSKERK 634
            YD+LFK++LIGDSGVGK+ L+ RF  + F+    STIG++F  R+++++GK IK Q+WDTAGQER++ IT+AYYRGA+G +LVYD+T   +FEN++ W++ ++++    +  +L+GNK D+     V  E  +  A +  + F ETSA  + NVD AF+ +   I      +   T     ++ + + ++K
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVDIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRQVQREQAEKLAREHRIRFFETSAKSSVNVDEAFSSLARDILLKTGGRRSGTNSKPSSTGLKTSDKK 195          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB43_RAT (Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.672e-40
Identity = 81/169 (47.93%), Postives = 117/169 (69.23%), Query Frame = 2
Query:   53 EDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEK-ESLFFMETSALEATNVDNAFAEVLTQI 556
            ++ YD+LFK+VL+GD+ VGK+ ++ RF    FS    STIGV+F  ++L + GK +K QIWDTAGQER+R IT +YYR A GA+L YD+++ STF +V  W+ ++R +   NIV +LIGNKSDL  L  V   + +S AE  + L  +ETSA +++NV+ AF  V T++
Sbjct:   10 DEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADLREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATEL 178          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 1.672e-40
Identity = 80/187 (42.78%), Postives = 120/187 (64.17%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSAVPS 622
            YD+LFK++LIGDSGVGK+ L+ RF  + F+    STIG++F  R++ ++GK IK Q+WDTAGQER++ IT+AYYRGA+G +LVYD+T   +FEN++ W++ ++++    +  +L+GNK D+     V  E  +  A +  + F ETSA  + NVD AF+ +   I           G   GNS+ PS
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQREQAERLAREHRIRFFETSAKSSVNVDEAFSSLARDIL------LKTGGRRSGNSSKPS 185          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB4A_HUMAN (Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4A PE=1 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 3.725e-40
Identity = 84/192 (43.75%), Postives = 121/192 (63.02%), Query Frame = 2
Query:   56 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSK-----KAMETGEDVGNSAV 616
            + YD+LFK ++IG++G GKS LL +F   +F  +S  TIGVEF ++ +NV GK +K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NIV++L GNK DL     V+  +   FA++  L F+ETSAL   NV+ AF +   +I   +       + M +G   G++A+
Sbjct:    3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPERMGSGIQYGDAAL 194          
The following BLAST results are available for this feature:
BLAST of CX295750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT1_SCHPO5.747e-4150.00GTP-binding protein ypt1 OS=Schizosaccharomyces po... [more]
RAB8B_DICDI5.747e-4146.93Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RAB43_HUMAN5.747e-4148.52Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4... [more]
RAB19_RAT7.506e-4149.70Ras-related protein Rab-19 OS=Rattus norvegicus GN... [more]
RYL1_YARLI9.803e-4142.42Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RAB1C_DICDI9.803e-4144.69Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
RAB13_MOUSE1.280e-4039.79Ras-related protein Rab-13 OS=Mus musculus GN=Rab1... [more]
RAB43_RAT1.672e-4047.93Ras-related protein Rab-43 OS=Rattus norvegicus GN... [more]
RAB13_RAT1.672e-4042.78Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
RAB4A_HUMAN3.725e-4043.75Ras-related protein Rab-4A OS=Homo sapiens GN=RAB4... [more]

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Properties
Property NameValue
Genbank descriptionC05075E05SK DroRLeaf1 Citrus clementina cDNA clone C05075E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295750 ID=CX295750; Name=CX295750; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAGTGTGAAGATATAAAGTTGCAATAGCTATGGCTGGATACAGAG
CTGAAGATGACTATGATTATCTTTTTAAGGTGGTTTTGATCGGTGACTCC
GGTGTCGGCAAGTCCAATTTGCTTTCGAGGTTCACTAGGAACGAGTTTAG
TCTCGAGTCTAAGTCCACAATAGGTGTTGAGTTCGCTACTCGTAGCTTGA
ATGTCGATGGCAAAGTCATCAAAGCTCAGATTTGGGACACCGCCGGCCAA
GAAAGGTACCGTGCCATAACCAGTGCATACTACCGAGGAGCTGTCGGGGC
ACTTCTAGTGTATGACGTCACTCGGCATTCCACATTTGAAAATGTGGAAA
GGTGGTTAAGGGAGTTGAGGGATCACACAGATCCCAACATTGTGGTTATG
CTCATTGGTAATAAATCGGATCTCCGTCACCTGGTGGCTGTCTCAACAGA
GGACGGGAAATCATTTGCTGAGAAGGAATCTCTCTTCTTCATGGAAACTT
CTGCTCTGGAGGCTACTAATGTGGACAATGCATTTGCTGAAGTGCTGACT
CAAATCTACCGTATTGTGAGCAAGAAGGCCATGGAGACAGGTGAGGATGT
AGGAAATTCTGCTGTACCTTCCAAGGAGAGAAAATTGATGTCAGTAAAGA
TGTGTCTGCTGTGAAGAAGGTGGCTGCTGCTCACT
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