CX295750

Overview
NameCX295750
Unique NameCX295750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB4A_BOVIN (Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 3.725e-40
Identity = 84/192 (43.75%), Postives = 121/192 (63.02%), Query Frame = 2
Query:   56 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSK-----KAMETGEDVGNSAV 616
            + YD+LFK ++IG++G GKS LL +F   +F  +S  TIGVEF ++ +NV GK +K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NIV++L GNK DL     V+  +   FA++  L F+ETSAL   NV+ AF +   +I   +       + M +G   G++A+
Sbjct:    3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDTDREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPERMGSGIQYGDAAL 194          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB19_HUMAN (Ras-related protein Rab-19 OS=Homo sapiens GN=RAB19 PE=2 SV=2)

HSP 1 Score: 164.851 bits (416), Expect = 3.725e-40
Identity = 78/163 (47.85%), Postives = 113/163 (69.33%), Query Frame = 2
Query:   50 AEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLF-FMETSALEATNVDNAF 535
            A++++DYLFK++LIGDS VGK+ ++  F    ++   ++TIGV+F  RSL++DGK +K Q+WDTAGQER+R IT +YYR A  A++ YD+TR STFE++  W+ E+  +   N+V+MLIGNK DL     V  ED  + AEK  L   +ETSA E+ N++  F
Sbjct:   10 ADENFDYLFKIILIGDSNVGKTCVVQHFKSGVYTETQQNTIGVDFTVRSLDIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESIPHWIHEIEKYGAANVVIMLIGNKCDLWEKRHVLFEDACTLAEKYGLLAVLETSAKESKNIEEVF 172          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB4A_RAT (Ras-related protein Rab-4A OS=Rattus norvegicus GN=Rab4a PE=2 SV=2)

HSP 1 Score: 164.466 bits (415), Expect = 4.865e-40
Identity = 84/192 (43.75%), Postives = 121/192 (63.02%), Query Frame = 2
Query:   56 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSK-----KAMETGEDVGNSAV 616
            + YD+LFK ++IG++G GKS LL +F   +F  +S  TIGVEF ++ +NV GK +K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NIV++L GNK DL     V+  +   FA++  L F+ETSAL   NV+ AF +   +I   +       + M +G   G++A+
Sbjct:    3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFMQCARKILNKIESGELDPERMGSGIQYGDAAL 194          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB43_MOUSE (Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1)

HSP 1 Score: 164.466 bits (415), Expect = 4.865e-40
Identity = 80/169 (47.34%), Postives = 116/169 (68.64%), Query Frame = 2
Query:   53 EDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEK-ESLFFMETSALEATNVDNAFAEVLTQI 556
            ++ YD+LFK+VL+GD+ VGK+ ++ RF    FS    STIGV+F  ++L + GK +K QIWDTAGQER+R IT +YYR A GA+L YD+++ STF +V  W+ ++R +   NIV +LIGNKSDL     V   + +S AE  + L  +ETSA +++NV+ AF  V T++
Sbjct:   10 DEHYDFLFKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADFREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATEL 178          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB13_HUMAN (Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.354e-40
Identity = 74/165 (44.85%), Postives = 113/165 (68.48%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQI 556
            YD+LFK++LIGDSGVGK+ L+ RF  + F+    STIG++F  R+++++GK IK Q+WDTAGQER++ IT+AYYRGA+G +LVYD+T   +FEN++ W++ ++++    +  +L+GNK D+     V  E     A +  + F ETSA  + NVD AF+ +   I
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB13_BOVIN (Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.354e-40
Identity = 74/165 (44.85%), Postives = 113/165 (68.48%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQI 556
            YD+LFK++LIGDSGVGK+ L+ RF  + F+    STIG++F  R+++++GK IK Q+WDTAGQER++ IT+AYYRGA+G +LVYD+T   +FEN++ W++ ++++    +  +L+GNK D+     V  E     A +  + F ETSA  + NVD AF+ +   I
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFRIRTVDIEGKKIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQKEQADKLAREHGIRFFETSAKSSMNVDEAFSSLARDI 169          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: YPTV2_VOLCA (GTP-binding protein yptV2 OS=Volvox carteri GN=YPTV2 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.299e-40
Identity = 83/175 (47.43%), Postives = 114/175 (65.14%), Query Frame = 2
Query:   35 MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDL-RHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQI 556
            MA      DYD L K++L+GDSGVGKS LL RFT + F+    +TIG++F  + ++VDGK++K QIWDTAGQER+R ITSAYYRGA G +LVYD+T  ++F NV  W+R +  H   N+  +L+GNK DL      VS   G++ A++    F ETSA +  +V+ AF  V   +
Sbjct:    1 MARIPGRPDYDALIKLLLVGDSGVGKSCLLLRFTDDMFTSSFITTIGIDFKIKKVDVDGKLVKLQIWDTAGQERFRTITSAYYRGAQGIILVYDITDEASFNNVRNWMRNIEQHASDNVNKILVGNKLDLAEDKRVVSIARGQALADEFGFRFYETSAKDNVHVEEAFIAVAKDV 175          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB35_RAT (Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.299e-40
Identity = 88/196 (44.90%), Postives = 123/196 (62.76%), Query Frame = 2
Query:   59 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRI----VSKKAMETGEDVGNSAVPSKERK 634
            DYD+LFK+++IGDSGVGKS+LL RF  N FS    +TIGV+F  R++ ++G+ +K QIWDTAGQER+R ITS YYRG  G ++VYDVT   +F NV+RWL E+  + D ++  +L+GNK+D      V TED   FA +  +   ETSA E  NV+  F  +   + R     ++K+  +   DV      SK +K
Sbjct:    4 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLTKNSKRKK 198          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB35_MOUSE (Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.299e-40
Identity = 88/196 (44.90%), Postives = 123/196 (62.76%), Query Frame = 2
Query:   59 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRI----VSKKAMETGEDVGNSAVPSKERK 634
            DYD+LFK+++IGDSGVGKS+LL RF  N FS    +TIGV+F  R++ ++G+ +K QIWDTAGQER+R ITS YYRG  G ++VYDVT   +F NV+RWL E+  + D ++  +L+GNK+D      V TED   FA +  +   ETSA E  NV+  F  +   + R     ++K+  +   DV      SK +K
Sbjct:    4 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLTKNSKRKK 198          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB35_HUMAN (Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.299e-40
Identity = 88/196 (44.90%), Postives = 123/196 (62.76%), Query Frame = 2
Query:   59 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRI----VSKKAMETGEDVGNSAVPSKERK 634
            DYD+LFK+++IGDSGVGKS+LL RF  N FS    +TIGV+F  R++ ++G+ +K QIWDTAGQER+R ITS YYRG  G ++VYDVT   +F NV+RWL E+  + D ++  +L+GNK+D      V TED   FA +  +   ETSA E  NV+  F  +   + R     ++K+  +   DV      SK +K
Sbjct:    4 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLTKNSKRKK 198          
The following BLAST results are available for this feature:
BLAST of CX295750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB4A_BOVIN3.725e-4043.75Ras-related protein Rab-4A OS=Bos taurus GN=RAB4A ... [more]
RAB19_HUMAN3.725e-4047.85Ras-related protein Rab-19 OS=Homo sapiens GN=RAB1... [more]
RAB4A_RAT4.865e-4043.75Ras-related protein Rab-4A OS=Rattus norvegicus GN... [more]
RAB43_MOUSE4.865e-4047.34Ras-related protein Rab-43 OS=Mus musculus GN=Rab4... [more]
RAB13_HUMAN6.354e-4044.85Ras-related protein Rab-13 OS=Homo sapiens GN=RAB1... [more]
RAB13_BOVIN6.354e-4044.85Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 ... [more]
YPTV2_VOLCA8.299e-4047.43GTP-binding protein yptV2 OS=Volvox carteri GN=YPT... [more]
RAB35_RAT8.299e-4044.90Ras-related protein Rab-35 OS=Rattus norvegicus GN... [more]
RAB35_MOUSE8.299e-4044.90Ras-related protein Rab-35 OS=Mus musculus GN=Rab3... [more]
RAB35_HUMAN8.299e-4044.90Ras-related protein Rab-35 OS=Homo sapiens GN=RAB3... [more]

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Properties
Property NameValue
Genbank descriptionC05075E05SK DroRLeaf1 Citrus clementina cDNA clone C05075E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295750 ID=CX295750; Name=CX295750; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAGTGTGAAGATATAAAGTTGCAATAGCTATGGCTGGATACAGAG
CTGAAGATGACTATGATTATCTTTTTAAGGTGGTTTTGATCGGTGACTCC
GGTGTCGGCAAGTCCAATTTGCTTTCGAGGTTCACTAGGAACGAGTTTAG
TCTCGAGTCTAAGTCCACAATAGGTGTTGAGTTCGCTACTCGTAGCTTGA
ATGTCGATGGCAAAGTCATCAAAGCTCAGATTTGGGACACCGCCGGCCAA
GAAAGGTACCGTGCCATAACCAGTGCATACTACCGAGGAGCTGTCGGGGC
ACTTCTAGTGTATGACGTCACTCGGCATTCCACATTTGAAAATGTGGAAA
GGTGGTTAAGGGAGTTGAGGGATCACACAGATCCCAACATTGTGGTTATG
CTCATTGGTAATAAATCGGATCTCCGTCACCTGGTGGCTGTCTCAACAGA
GGACGGGAAATCATTTGCTGAGAAGGAATCTCTCTTCTTCATGGAAACTT
CTGCTCTGGAGGCTACTAATGTGGACAATGCATTTGCTGAAGTGCTGACT
CAAATCTACCGTATTGTGAGCAAGAAGGCCATGGAGACAGGTGAGGATGT
AGGAAATTCTGCTGTACCTTCCAAGGAGAGAAAATTGATGTCAGTAAAGA
TGTGTCTGCTGTGAAGAAGGTGGCTGCTGCTCACT
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