CX295750

Overview
NameCX295750
Unique NameCX295750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB19_XENTR (Ras-related protein Rab-19 OS=Xenopus tropicalis GN=rab19 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.299e-40
Identity = 77/162 (47.53%), Postives = 112/162 (69.14%), Query Frame = 2
Query:   53 EDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLF-FMETSALEATNVDNAF 535
            +D +D+LFK++LIGDS VGK+ ++ RF    F+   ++TIGV+F  R++N++GK +K Q+WDTAGQER+R IT +YYR A GA++ YD+TR  +FE+V  W+ E   +   N+++MLIGNKSDL     +  E+  + AEK  L   +ETSA E+ NVD  F
Sbjct:    9 DDPFDFLFKIILIGDSNVGKTCVVHRFQSGVFAHNQQNTIGVDFTVRNMNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAEKYGAANLMMMLIGNKSDLAEKRQILFEEACTLAEKHGLLAVLETSAKESHNVDEVF 170          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB4A_MOUSE (Ras-related protein Rab-4A OS=Mus musculus GN=Rab4a PE=1 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.849e-39
Identity = 83/192 (43.23%), Postives = 121/192 (63.02%), Query Frame = 2
Query:   56 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSK-----KAMETGEDVGNSAV 616
            + YD+LFK ++IG++G GKS LL +F   +F  +S  TIG+EF ++ +NV GK +K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NIV++L GNK DL     V+  +   FA++  L F+ETSAL   NV+ AF +   +I   +       + M +G   G++A+
Sbjct:    3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGMEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVLILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFMQCARKILNKIESGELDPERMGSGIQYGDAAL 194          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB19_XENLA (Ras-related protein Rab-19 OS=Xenopus laevis GN=rab19 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.849e-39
Identity = 79/166 (47.59%), Postives = 112/166 (67.47%), Query Frame = 2
Query:   41 GYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLF-FMETSALEATNVDNAF 535
            G   +D +D+LFK++LIGDS VGK+ ++ RF    F    ++TIGV+F  RSLN++GK +K Q+WDTAGQER+R IT +YYR A GA++ YD+TR  +FE+V  W+ E   +   N+++ML+GNKSDL     +  E+  + AEK  L   +ETSA E+ NVD  F
Sbjct:    5 GSLEDDPFDFLFKIILIGDSNVGKTCVVHRFQSGIFMDNQQNTIGVDFTVRSLNINGKKVKVQVWDTAGQERFRTITQSYYRSAHGAIIAYDITRRQSFESVPHWIYEAGKYGAANLMLMLMGNKSDLAEKRQILFEEACTLAEKHGLLAVLETSAKESHNVDEVF 170          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB4A_ECHMU (Probable Ras-related protein Rab-4A OS=Echinococcus multilocularis PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.154e-39
Identity = 84/200 (42.00%), Postives = 124/200 (62.00%), Query Frame = 2
Query:   56 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTE-DGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSAVPSKERKLMSVKM 652
            D +DYLFK ++IG++G GK+ +L R+T  +F   ++ TIG EF +R ++VDG  +K QIWDTAGQER+R++  +YY  AVG LLVYD+T  ++F  VE+WL + R    P +VV+L+GNK DLR      T  +  +FA++  L F+ETSAL   N+D+AF    T   R++  K            V S ++ L +V +
Sbjct:    4 DRFDYLFKFLIIGNAGTGKTCILRRYTERKFFPNTQHTIGAEFGSRVISVDGTHVKIQIWDTAGQERFRSMARSYYHDAVGTLLVYDITNRTSFGAVEQWLGDARHLATPGVVVILVGNKKDLRDTDGQVTHWEANTFAQENGLQFIETSALTGENIDDAF----TSCVRVLLSKVKSGELGADRLLVGSNKQHLQAVNL 199          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB13_MESAU (Ras-related protein Rab-13 OS=Mesocricetus auratus GN=RAB13 PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 3.154e-39
Identity = 79/187 (42.25%), Postives = 117/187 (62.57%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSAVPS 622
            YD+LFK++LIGDSGVGK+ L+ RF  + F+    STIG++F  R++ ++GK IK Q+WDTAGQER++ IT+AYYRGA+G +LVYD+T   +FEN++ W++ ++++    +  +L+GNK D+     V  E     A +  + F ETSA  + NVD AF  +   I           G   GN + PS
Sbjct:    5 YDHLFKLLLIGDSGVGKTCLIIRFAEDNFNNTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVLKEQADKLAREHGIRFFETSAKSSMNVDEAFNSLARDIL------LKSGGRRSGNHSKPS 185          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 161.384 bits (407), Expect = 4.119e-39
Identity = 78/160 (48.75%), Postives = 114/160 (71.25%), Query Frame = 2
Query:   56 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAF 535
            +++DYLFK++LIGDS VGKS  L RF  + +     STIGV+F  R++ V+GK +K QIWDTAGQER+R ITS+YYRGA G ++VYD+T   +F NV++WL E+  + + ++  +L+GNK DL    AV T   +++A++  + F+ETSA E+ NV+ AF
Sbjct:    3 NEFDYLFKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAF 162          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB1_THEPA (Ras-related protein Rab-1 OS=Theileria parva GN=rab1 PE=1 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.119e-39
Identity = 78/163 (47.85%), Postives = 111/163 (68.10%), Query Frame = 2
Query:   59 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENV-ERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEV 544
            +YDYLFK+++IGDSG GKS+LL RF  N +S    STIGV+F  +++ +D   IK QIWDTAGQER+R ITS YYRGA G + VYDVT   +F+++ E WL+++  +   N+  +LIGNK DL     VS ++ K  AE+ ++ ++E SA   +NV+ AF  +
Sbjct:    3 EYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLAESRVVSADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTI 165          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB19_BOVIN (Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.119e-39
Identity = 78/162 (48.15%), Postives = 109/162 (67.28%), Query Frame = 2
Query:   53 EDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLF-FMETSALEATNVDNAF 535
            ++++DYLFK++LIGDS VGK+ ++  F    +    ++TIGV+F  R+L +DGK +K Q+WDTAGQER+R IT +YYR A  A++ YD+TR STFE+V  W+ E+  +   N+V+MLIGNK DL     V  ED    AEK  L   +ETSA E+ N+D  F
Sbjct:   11 DENFDYLFKIILIGDSNVGKTCVVQHFKSGVYMEAQQNTIGVDFTVRALEIDGKKVKMQVWDTAGQERFRTITQSYYRSAHAAIIAYDLTRRSTFESVPHWIHEIEKYGAANLVIMLIGNKCDLWEKRHVLFEDACILAEKYGLLAVLETSAKESKNIDEVF 172          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: YPTV3_VOLCA (GTP-binding protein yptV3 OS=Volvox carteri GN=YPTV3 PE=3 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.379e-39
Identity = 86/171 (50.29%), Postives = 112/171 (65.50%), Query Frame = 2
Query:   50 AEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVE-RWLRELRDH-TDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQI 556
            A D +DY FKV+L+GDSGVGKS +L+RFT   F   + STIGV+F  + L  DGK  K  IWDTAGQER+R +TS+YYRGA G + VYDVTR  TFE++E  W+RE   + T  + + M++ NK DL     VS+E+G  FA +    F+ETSA     V  AF E+L +I
Sbjct:    2 AVDSHDYTFKVLLVGDSGVGKSCILTRFTSGIFEESTTSTIGVDFKVKYLTADGKRCKLTIWDTAGQERFRTLTSSYYRGAQGIIFVYDVTRRDTFESLEANWMREFDIYSTVESAIKMVVANKVDLSAQRQVSSEEGHDFARRHGCLFVETSARANLAVGQAFEELLLKI 172          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB30_MOUSE (Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.379e-39
Identity = 76/200 (38.00%), Postives = 128/200 (64.00%), Query Frame = 2
Query:   56 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSAVPSKERKLMSVKMC 655
            +DYD+LFK+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  +++ ++G+ +K QIWDTAGQER+R+IT +YYR A   +L YD+T   +F  +  WLRE+  +    ++ +L+GNK DL     VS +  + F+E + ++++ETSA E+ NV+  F ++     R++S+    T  +  +S +P + + +  +  C
Sbjct:    4 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC---RLISEARQNTLVNNVSSPLPGEGKSISYLTCC 200          
The following BLAST results are available for this feature:
BLAST of CX295750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB19_XENTR8.299e-4047.53Ras-related protein Rab-19 OS=Xenopus tropicalis G... [more]
RAB4A_MOUSE1.849e-3943.23Ras-related protein Rab-4A OS=Mus musculus GN=Rab4... [more]
RAB19_XENLA1.849e-3947.59Ras-related protein Rab-19 OS=Xenopus laevis GN=ra... [more]
RAB4A_ECHMU3.154e-3942.00Probable Ras-related protein Rab-4A OS=Echinococcu... [more]
RAB13_MESAU3.154e-3942.25Ras-related protein Rab-13 OS=Mesocricetus auratus... [more]
YPTM1_MAIZE4.119e-3948.75GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RAB1_THEPA4.119e-3947.85Ras-related protein Rab-1 OS=Theileria parva GN=ra... [more]
RAB19_BOVIN4.119e-3948.15Ras-related protein Rab-19 OS=Bos taurus GN=RAB19 ... [more]
YPTV3_VOLCA5.379e-3950.29GTP-binding protein yptV3 OS=Volvox carteri GN=YPT... [more]
RAB30_MOUSE5.379e-3938.00Ras-related protein Rab-30 OS=Mus musculus GN=Rab3... [more]

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Properties
Property NameValue
Genbank descriptionC05075E05SK DroRLeaf1 Citrus clementina cDNA clone C05075E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295750 ID=CX295750; Name=CX295750; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAGTGTGAAGATATAAAGTTGCAATAGCTATGGCTGGATACAGAG
CTGAAGATGACTATGATTATCTTTTTAAGGTGGTTTTGATCGGTGACTCC
GGTGTCGGCAAGTCCAATTTGCTTTCGAGGTTCACTAGGAACGAGTTTAG
TCTCGAGTCTAAGTCCACAATAGGTGTTGAGTTCGCTACTCGTAGCTTGA
ATGTCGATGGCAAAGTCATCAAAGCTCAGATTTGGGACACCGCCGGCCAA
GAAAGGTACCGTGCCATAACCAGTGCATACTACCGAGGAGCTGTCGGGGC
ACTTCTAGTGTATGACGTCACTCGGCATTCCACATTTGAAAATGTGGAAA
GGTGGTTAAGGGAGTTGAGGGATCACACAGATCCCAACATTGTGGTTATG
CTCATTGGTAATAAATCGGATCTCCGTCACCTGGTGGCTGTCTCAACAGA
GGACGGGAAATCATTTGCTGAGAAGGAATCTCTCTTCTTCATGGAAACTT
CTGCTCTGGAGGCTACTAATGTGGACAATGCATTTGCTGAAGTGCTGACT
CAAATCTACCGTATTGTGAGCAAGAAGGCCATGGAGACAGGTGAGGATGT
AGGAAATTCTGCTGTACCTTCCAAGGAGAGAAAATTGATGTCAGTAAAGA
TGTGTCTGCTGTGAAGAAGGTGGCTGCTGCTCACT
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