CX295750

Overview
NameCX295750
Unique NameCX295750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB30_HUMAN (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 5.379e-39
Identity = 76/200 (38.00%), Postives = 128/200 (64.00%), Query Frame = 2
Query:   56 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSAVPSKERKLMSVKMC 655
            +DYD+LFK+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  +++ ++G+ +K QIWDTAGQER+R+IT +YYR A   +L YD+T   +F  +  WLRE+  +    ++ +L+GNK DL     VS +  + F+E + ++++ETSA E+ NV+  F ++     R++S+    T  +  +S +P + + +  +  C
Sbjct:    4 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC---RLISEARQNTLVNNVSSPLPGEGKSISYLTCC 200          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB30_BOVIN (Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.379e-39
Identity = 76/200 (38.00%), Postives = 128/200 (64.00%), Query Frame = 2
Query:   56 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSAVPSKERKLMSVKMC 655
            +DYD+LFK+VLIG++GVGK+ L+ RFT+  F     +TIGV+F  +++ ++G+ +K QIWDTAGQER+R+IT +YYR A   +L YD+T   +F  +  WLRE+  +    ++ +L+GNK DL     VS +  + F+E + ++++ETSA E+ NV+  F ++     R++S+    T  +  +S +P + + +  +  C
Sbjct:    4 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC---RLISEARQNTLVNNVSSPLPGEGKSISYLTCC 200          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB10_PONAB (Ras-related protein Rab-10 OS=Pongo abelii GN=RAB10 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.026e-39
Identity = 77/171 (45.03%), Postives = 113/171 (66.08%), Query Frame = 2
Query:   50 AEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYR 562
            A+  YD LFK++LIGDSGVGK+ +L RF+ + F+    STIG++F  +++ + GK IK QIWDTAGQER+  IT++YYRGA+G +LVYD+T   +FEN+ +WLR + +H + ++  ML+GNK D+     V    G+  A +  + F ETSA    N++ AF  +   I R
Sbjct:    2 AKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILR 172          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.026e-39
Identity = 77/171 (45.03%), Postives = 113/171 (66.08%), Query Frame = 2
Query:   50 AEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYR 562
            A+  YD LFK++LIGDSGVGK+ +L RF+ + F+    STIG++F  +++ + GK IK QIWDTAGQER+  IT++YYRGA+G +LVYD+T   +FEN+ +WLR + +H + ++  ML+GNK D+     V    G+  A +  + F ETSA    N++ AF  +   I R
Sbjct:    2 AKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILR 172          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.026e-39
Identity = 77/171 (45.03%), Postives = 113/171 (66.08%), Query Frame = 2
Query:   50 AEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYR 562
            A+  YD LFK++LIGDSGVGK+ +L RF+ + F+    STIG++F  +++ + GK IK QIWDTAGQER+  IT++YYRGA+G +LVYD+T   +FEN+ +WLR + +H + ++  ML+GNK D+     V    G+  A +  + F ETSA    N++ AF  +   I R
Sbjct:    2 AKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILR 172          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB26_RAT (Ras-related protein Rab-26 OS=Rattus norvegicus GN=Rab26 PE=2 SV=2)

HSP 1 Score: 160.229 bits (404), Expect = 9.176e-39
Identity = 81/178 (45.51%), Postives = 116/178 (65.17%), Query Frame = 2
Query:   56 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAME 586
            D YD  FKV+L+GDSGVGK+ LL RF    F   +  ST+G++F  + L+VDG  +K QIWDTAGQER+R++T AYYR A   LL+YD+T   +F+N++ WL E++++   ++V+ML+GNK D      V  EDG+  A++  L FMETSA    NVD AF  +  ++ +  +K   E
Sbjct:   59 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQERVVKREDGEKLAKEYGLPFMETSAKSGLNVDLAFTAIAKELKQRSTKAPSE 236          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.176e-39
Identity = 76/169 (44.97%), Postives = 113/169 (66.86%), Query Frame = 2
Query:   50 AEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQI 556
            A+  YD LFK++LIGDSGVGK+ +L RF+ + F+    STIG++F  +++ + GK IK QIWDTAGQER+  IT++YYRGA+G +LVYD+T   +FEN+ +WLR + +H + ++  ML+GNK D+     V    G+  A + ++ F ETSA    N++ AF  +   I
Sbjct:    2 AKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSAKANINIEKAFLTLAEDI 170          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 9.176e-39
Identity = 77/171 (45.03%), Postives = 113/171 (66.08%), Query Frame = 2
Query:   50 AEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYR 562
            A+  YD LFK++LIGDSGVGK+ +L RF+ + F+    STIG++F  +++ + GK IK QIWDTAGQER+  IT++YYRGA+G +LVYD+T   +FEN+ +WLR + +H + ++  ML+GNK D+     V    G+  A +  + F ETSA    N++ AF  +   I R
Sbjct:    2 AKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKVNINIEKAFLTLAEDILR 172          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB4A_DANRE (Ras-related protein Rab-4A OS=Danio rerio GN=rab4a PE=2 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 1.565e-38
Identity = 82/192 (42.71%), Postives = 119/192 (61.98%), Query Frame = 2
Query:   56 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSK-----KAMETGEDVGNSAV 616
            + YD+LFK ++IG++G GKS LL +F    F  +S  TIGVEF ++ ++V  K +K QIWDTAGQER+R++T +YYRGA GALLVYD+T   T+  +  WL + R     NIV++L GNK DL     V+  +   FA++  L F+ETSAL   NV+ AF +   +I   +       + M +G   G++A+
Sbjct:    3 ETYDFLFKFLVIGNAGTGKSCLLHQFIEKRFKDDSNHTIGVEFGSKIISVVNKFVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGELDPERMGSGIQYGDAAL 194          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB26_MOUSE (Ras-related protein Rab-26 OS=Mus musculus GN=Rab26 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.565e-38
Identity = 81/178 (45.51%), Postives = 116/178 (65.17%), Query Frame = 2
Query:   56 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAME 586
            D YD  FKV+L+GDSGVGK+ LL RF    F   +  ST+G++F  + L+VDG  +K QIWDTAGQER+R++T AYYR A   LL+YD+T   +F+N++ WL E++++   ++V+ML+GNK D      V  EDG+  A++  L FMETSA    NVD AF  +  ++ +  +K   E
Sbjct:   62 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDITNKDSFDNIQAWLTEIQEYAQQDVVLMLLGNKVDSTQDRVVKREDGEKLAKEYGLPFMETSARTGLNVDLAFTAIAKELKQRSAKAPSE 239          
The following BLAST results are available for this feature:
BLAST of CX295750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB30_HUMAN5.379e-3938.00Ras-related protein Rab-30 OS=Homo sapiens GN=RAB3... [more]
RAB30_BOVIN5.379e-3938.00Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 ... [more]
RAB10_PONAB7.026e-3945.03Ras-related protein Rab-10 OS=Pongo abelii GN=RAB1... [more]
RAB10_MOUSE7.026e-3945.03Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN7.026e-3945.03Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RAB26_RAT9.176e-3945.51Ras-related protein Rab-26 OS=Rattus norvegicus GN... [more]
RAB10_DISOM9.176e-3944.97Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
RAB10_CANFA9.176e-3945.03Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]
RAB4A_DANRE1.565e-3842.71Ras-related protein Rab-4A OS=Danio rerio GN=rab4a... [more]
RAB26_MOUSE1.565e-3845.51Ras-related protein Rab-26 OS=Mus musculus GN=Rab2... [more]

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Properties
Property NameValue
Genbank descriptionC05075E05SK DroRLeaf1 Citrus clementina cDNA clone C05075E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295750 ID=CX295750; Name=CX295750; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAGTGTGAAGATATAAAGTTGCAATAGCTATGGCTGGATACAGAG
CTGAAGATGACTATGATTATCTTTTTAAGGTGGTTTTGATCGGTGACTCC
GGTGTCGGCAAGTCCAATTTGCTTTCGAGGTTCACTAGGAACGAGTTTAG
TCTCGAGTCTAAGTCCACAATAGGTGTTGAGTTCGCTACTCGTAGCTTGA
ATGTCGATGGCAAAGTCATCAAAGCTCAGATTTGGGACACCGCCGGCCAA
GAAAGGTACCGTGCCATAACCAGTGCATACTACCGAGGAGCTGTCGGGGC
ACTTCTAGTGTATGACGTCACTCGGCATTCCACATTTGAAAATGTGGAAA
GGTGGTTAAGGGAGTTGAGGGATCACACAGATCCCAACATTGTGGTTATG
CTCATTGGTAATAAATCGGATCTCCGTCACCTGGTGGCTGTCTCAACAGA
GGACGGGAAATCATTTGCTGAGAAGGAATCTCTCTTCTTCATGGAAACTT
CTGCTCTGGAGGCTACTAATGTGGACAATGCATTTGCTGAAGTGCTGACT
CAAATCTACCGTATTGTGAGCAAGAAGGCCATGGAGACAGGTGAGGATGT
AGGAAATTCTGCTGTACCTTCCAAGGAGAGAAAATTGATGTCAGTAAAGA
TGTGTCTGCTGTGAAGAAGGTGGCTGCTGCTCACT
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