CX295750

Overview
NameCX295750
Unique NameCX295750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.565e-38
Identity = 76/171 (44.44%), Postives = 112/171 (65.50%), Query Frame = 2
Query:   50 AEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYR 562
            A+  YD LFK++LIGDSGVGK+ +L RF+ + F+    STIG++   +++ + GK IK QIWDTAGQER+  IT++YYRGA+G +LVYD+T   +FEN+ +WLR + +H + ++  ML+GNK D+     V    G+  A +  + F ETSA    N++ AF  +   I R
Sbjct:    2 AKKTYDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILR 172          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB26_HUMAN (Ras-related protein Rab-26 OS=Homo sapiens GN=RAB26 PE=1 SV=3)

HSP 1 Score: 159.073 bits (401), Expect = 2.044e-38
Identity = 79/168 (47.02%), Postives = 112/168 (66.67%), Query Frame = 2
Query:   56 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQI 556
            D YD  FKV+L+GDSGVGK+ LL RF    F   +  ST+G++F  + L+VDG  +K Q+WDTAGQER+R++T AYYR A   LL+YDVT  ++F+N++ WL E+ ++   ++ +ML+GNK D  H   V  EDG+  A++  L FMETSA    NVD AF  +  ++
Sbjct:   58 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKEL 225          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.554e-38
Identity = 82/181 (45.30%), Postives = 119/181 (65.75%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVG 604
            YD + K++L+GDSGVGKS LL RF  ++F+    +TIG++F  R++   GK IK Q+WDTAGQER+R IT+AYYRGA+G +L+YDVT   +FENVE W + +  H + +  + L+GNK D      VS E G+  A K ++ F+E SA    NVD+ F E+ +    I+ +K +E  E++G
Sbjct:   11 YDMIMKLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCDDEVNRQVSKEQGQELAAKLNVPFLEASAKSNENVDSIFYELAS----IIQEKHVE--ENIG 185          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RHA1_ARATH (Ras-related protein RHA1 OS=Arabidopsis thaliana GN=RHA1 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.554e-38
Identity = 74/163 (45.40%), Postives = 115/163 (70.55%), Query Frame = 2
Query:   77 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRI 565
            K+VL+GD G GKS+L+ RF +++F    +STIG  F +++L V+   +K +IWDTAGQERY ++   YYRGA  A++V+D+T  ++FE  ++W++EL+   +PN+V+ L GNK+DL     VS E+ + +A++ SLFFMETSA  ATNV + F E+  ++ R+
Sbjct:   12 KLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIFYEIAKRLPRV 174          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB26_BOVIN (Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.554e-38
Identity = 81/178 (45.51%), Postives = 116/178 (65.17%), Query Frame = 2
Query:   56 DDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESK-STIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAME 586
            D YD  FKV+L+GDSGVGK+ LL RF    F   +  ST+G++F  + ++VDG  +K QIWDTAGQER+R++T AYYR A   LL+YDVT  ++F++++ WL E+++H   ++V+ML+GNK D     AV  ED +  A+   L FMETSA    NVD AF  +  ++ +  +K   E
Sbjct:   58 DFYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVVDVDGMKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDSIQAWLTEIQEHAQDDVVLMLLGNKVDSAQERAVKREDAEKLAKDYGLPFMETSAKTGLNVDLAFTAIAKELKQRHTKAPSE 235          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB1_THEAN (Ras-related protein Rab-1 OS=Theileria annulata GN=rab1 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.554e-38
Identity = 77/163 (47.24%), Postives = 110/163 (67.48%), Query Frame = 2
Query:   59 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENV-ERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEV 544
            +YDYLFK+++IGDSG GKS+LL RF  N +S    STIGV+F  +++ +D   IK QIWDTAGQER+R ITS YYRGA G + VYDVT   +F+++ E WL+++  +   N+  +LIGNK DL     V  ++ K  AE+ ++ ++E SA   +NV+ AF  +
Sbjct:    3 EYDYLFKIIVIGDSGTGKSSLLLRFADNTYSESYMSTIGVDFKIKTVKIDNTTIKLQIWDTAGQERFRTITSTYYRGAHGIICVYDVTNKLSFDHITETWLQDIDKYATSNVCKLLIGNKIDLVDSRVVLADEAKHVAEQNNMNYIEASAKTDSNVEKAFTTI 165          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RB39B_MOUSE (Ras-related protein Rab-39B OS=Mus musculus GN=Rab39b PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.948e-38
Identity = 87/206 (42.23%), Postives = 126/206 (61.17%), Query Frame = 2
Query:   68 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVD-GKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDP-NIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSK---KAMETGEDVGNSAVP----SKERKLMSVKMCL 658
            Y F++++IGDS VGKS L+ RFT   F+  S  T+GV+F +R + ++ GK IK QIWDTAGQER+R+IT AYYR +VG LL++D+T   +F+NV  WL E + H  P  IV +L+G+K DL     V+  + +  A    + ++ETSA +A NV+ AF ++   IY +V +      E  E V +  VP    S E  + S + CL
Sbjct:    7 YQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGEITIQEGWEGVKSGFVPNVVHSSEEVIKSERRCL 212          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RB39B_HUMAN (Ras-related protein Rab-39B OS=Homo sapiens GN=RAB39B PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.768e-38
Identity = 87/206 (42.23%), Postives = 126/206 (61.17%), Query Frame = 2
Query:   68 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVD-GKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDP-NIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSK---KAMETGEDVGNSAVP----SKERKLMSVKMCL 658
            Y F++++IGDS VGKS L+ RFT   F+  S  T+GV+F +R + ++ GK IK QIWDTAGQER+R+IT AYYR +VG LL++D+T   +F+NV  WL E + H  P  IV +L+G+K DL     V+  + +  A    + ++ETSA +A NV+ AF ++   IY +V +      E  E V +  VP    S E  + S + CL
Sbjct:    7 YQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGEITIQEGWEGVKSGFVPNVVHSSEEVVKSERRCL 212          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RB39B_BOVIN (Ras-related protein Rab-39B OS=Bos taurus GN=RAB39B PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 7.768e-38
Identity = 87/206 (42.23%), Postives = 126/206 (61.17%), Query Frame = 2
Query:   68 YLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVD-GKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDP-NIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSK---KAMETGEDVGNSAVP----SKERKLMSVKMCL 658
            Y F++++IGDS VGKS L+ RFT   F+  S  T+GV+F +R + ++ GK IK QIWDTAGQER+R+IT AYYR +VG LL++D+T   +F+NV  WL E + H  P  IV +L+G+K DL     V+  + +  A    + ++ETSA +A NV+ AF ++   IY +V +      E  E V +  VP    S E  + S + CL
Sbjct:    7 YQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVTRHEAEKLAAAYGMKYIETSARDAINVEKAFTDLTRDIYELVKRGDITIQEGWEGVKSGFVPNVVHSSEEVVKSERRCL 212          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: SEC4_YEAST (Ras-related protein SEC4 OS=Saccharomyces cerevisiae GN=SEC4 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.325e-37
Identity = 80/189 (42.33%), Postives = 127/189 (67.20%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIY-RIVSKKAMETGE-DVGNSAVPS 622
            YD + K++LIGDSGVGKS LL RF  ++F+    +TIG++F  ++++++GK +K Q+WDTAGQER+R IT+AYYRGA+G +LVYDVT   TF N+++W + + +H +    ++L+GNKSD+   V V+ + G++ A++  + F+E+SA    NV+  F  +   I  +I S K +  G    GN ++ S
Sbjct:   17 YDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKLVGVGNGKEGNISINS 204          
The following BLAST results are available for this feature:
BLAST of CX295750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB10_CHICK1.565e-3844.44Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]
RAB26_HUMAN2.044e-3847.02Ras-related protein Rab-26 OS=Homo sapiens GN=RAB2... [more]
SEC4_CANAL4.554e-3845.30Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
RHA1_ARATH4.554e-3845.40Ras-related protein RHA1 OS=Arabidopsis thaliana G... [more]
RAB26_BOVIN4.554e-3845.51Ras-related protein Rab-26 OS=Bos taurus GN=RAB26 ... [more]
RAB1_THEAN4.554e-3847.24Ras-related protein Rab-1 OS=Theileria annulata GN... [more]
RB39B_MOUSE5.948e-3842.23Ras-related protein Rab-39B OS=Mus musculus GN=Rab... [more]
RB39B_HUMAN7.768e-3842.23Ras-related protein Rab-39B OS=Homo sapiens GN=RAB... [more]
RB39B_BOVIN7.768e-3842.23Ras-related protein Rab-39B OS=Bos taurus GN=RAB39... [more]
SEC4_YEAST1.325e-3742.33Ras-related protein SEC4 OS=Saccharomyces cerevisi... [more]

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Properties
Property NameValue
Genbank descriptionC05075E05SK DroRLeaf1 Citrus clementina cDNA clone C05075E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295750 ID=CX295750; Name=CX295750; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAGTGTGAAGATATAAAGTTGCAATAGCTATGGCTGGATACAGAG
CTGAAGATGACTATGATTATCTTTTTAAGGTGGTTTTGATCGGTGACTCC
GGTGTCGGCAAGTCCAATTTGCTTTCGAGGTTCACTAGGAACGAGTTTAG
TCTCGAGTCTAAGTCCACAATAGGTGTTGAGTTCGCTACTCGTAGCTTGA
ATGTCGATGGCAAAGTCATCAAAGCTCAGATTTGGGACACCGCCGGCCAA
GAAAGGTACCGTGCCATAACCAGTGCATACTACCGAGGAGCTGTCGGGGC
ACTTCTAGTGTATGACGTCACTCGGCATTCCACATTTGAAAATGTGGAAA
GGTGGTTAAGGGAGTTGAGGGATCACACAGATCCCAACATTGTGGTTATG
CTCATTGGTAATAAATCGGATCTCCGTCACCTGGTGGCTGTCTCAACAGA
GGACGGGAAATCATTTGCTGAGAAGGAATCTCTCTTCTTCATGGAAACTT
CTGCTCTGGAGGCTACTAATGTGGACAATGCATTTGCTGAAGTGCTGACT
CAAATCTACCGTATTGTGAGCAAGAAGGCCATGGAGACAGGTGAGGATGT
AGGAAATTCTGCTGTACCTTCCAAGGAGAGAAAATTGATGTCAGTAAAGA
TGTGTCTGCTGTGAAGAAGGTGGCTGCTGCTCACT
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