CX295750

Overview
NameCX295750
Unique NameCX295750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAS3_RHIRA (Ras-like protein 3 OS=Rhizomucor racemosus GN=RAS3 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.304e-20
Identity = 57/165 (34.55%), Postives = 92/165 (55.76%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTD-PNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRI 565
            +K+V++G  GVGKS L  +F ++ F  E   TI   +  + + +D +     + DTAGQE Y A+   Y R   G +LVY +T   +FE V  + +++R   D  +  ++L+GNK DL     VS+++G+  A+     F ETSA +   VD+ F EV+ +I R+
Sbjct:   10 YKIVIVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCV-IDDETALLDVLDTAGQEEYSAMREQYMRNGEGFVLVYSITSRLSFEEVNTFYQQIRRVKDRDSFPMVLVGNKCDLEGDRQVSSQEGRDLAKSFGCPFSETSAKQRIRVDDTFYEVVREIRRM 173          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB7B_BOVIN (Ras-related protein Rab-7b OS=Bos taurus GN=RAB7B PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 7.304e-20
Identity = 52/156 (33.33%), Postives = 91/156 (58.33%), Query Frame = 2
Query:   77 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDP---NIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAF 535
            K+++IG  GVGK++LL R+    F  + ++T+G    ++ + ++   +K QIWDT GQER+R++ S +Y+G+ G +L +DVT   +FE +E W  ++   T P      ++++GNK DL     V  E  + + +++ + + E SA    NV  AF
Sbjct:   10 KLIIIGALGVGKTSLLHRYVHKTFYEDYQTTLGASILSKIIILEDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCVLAFDVTDLESFEALETWRGDVLAKTIPMEQPYPMVVLGNKIDLEDR-QVPQEVAQGWCKEKDIPYFEVSAKNDINVVQAF 164          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB24_DICDI (Ras-related protein Rab-24 OS=Dictyostelium discoideum GN=rab24 PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 9.540e-20
Identity = 56/159 (35.22%), Postives = 90/159 (56.60%), Query Frame = 2
Query:   77 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDL---RHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEV 544
            KVVL+G + VGK+ +++R+T  +F  ++ +TIG  F+++ + V    +   IWDTAG ERY+A+  +YYR A  A++ YD+T   ++E V  W  EL  + +P I + ++G K DL     + AV  E+ K  A +      ETS+    NV   F  +
Sbjct:    9 KVVLLGYASVGKTCIVTRYTSGQFG-DTHTTIGGAFSSKRVVVGETEVLLGIWDTAGTERYQAVNVSYYRRANAAIVCYDLTNRESWEKVTFWAEELTQN-EPEIEIYIVGTKLDLIQQGDIKAVPEEEVKQTARRYKAHIFETSSRTGENVSLLFQTI 165          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAS_EMENI (Ras-like protein OS=Emericella nidulans GN=AN0182 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.627e-19
Identity = 58/186 (31.18%), Postives = 99/186 (53.23%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV-VMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSAVPSKE 628
            +K+V++G  GVGKS L  +  ++ F  E   TI   +  + + +D +V    + DTAGQE Y A+   Y R   G LLVY +T   +FE +  + +++    D +   ++++GNK DL     VS ++G+S A +    F+ETSA    NV+NAF +++ +I R   + +  +G     +  P  +
Sbjct:    9 YKLVVVGGGGVGKSCLTIQLIQSHFVDEYDPTIEDSYRKQCV-IDDEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQILRVKDKDYFPIIVVGNKCDLDKERVVSEQEGESLARQFGCKFIETSAKSRINVENAFYDLVREIRRYNKEMSNPSGSGAFGARAPDSK 193          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB7B_MOUSE (Ras-related protein Rab-7b OS=Mus musculus GN=Rab7b PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.627e-19
Identity = 54/160 (33.75%), Postives = 94/160 (58.75%), Query Frame = 2
Query:   77 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDP---NIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVL 547
            K++++G  GVGK++LL ++    F  E ++T+G    ++ + +D   +K QIWDT GQER+R++ S +Y+G+ G +L +DVT   +FE ++ W  ++     P   +  ++++GNK DL     VS E    + +++ + + E SA    NV  AF EVL
Sbjct:   10 KLIIVGALGVGKTSLLHQYVHKTFFEEYQTTLGASILSKIIILDDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDPESFEALDIWRDDVLAKIIPMEQSYPMVVLGNKIDLEDR-KVSQEVVHGWCKEKDMPYFEVSAKNDINVVQAF-EVL 167          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAS_SCHPO (Ras-like protein 1 OS=Schizosaccharomyces pombe GN=ras1 PE=2 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.125e-19
Identity = 62/193 (32.12%), Postives = 98/193 (50.78%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRE-LRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQI--YRIVSKKAMETGEDVGNSAVPSKERKLMS 643
            +K+V++GD GVGKS L  +  ++ F  E   TI   +  +   +DG+     + DTAGQE Y A+   Y R   G LLVY++T  S+F+ +  + ++ LR        V+L+ NK DL     VS  +G+  A+     ++ETSA    NV+ AF  ++  I  Y    +K  +  + V  + VP+   K  S
Sbjct:    9 YKLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYR-KKCEIDGEGALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFPVVLVANKCDLEAERVVSRAEGEQLAKSMHCLYVETSAKLRLNVEEAFYSLVRTIRRYNKSEEKGFQNKQAVQTAQVPASTAKRAS 200          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAS2_DROME (Ras-like protein 2 OS=Drosophila melanogaster GN=Ras64B PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.125e-19
Identity = 58/168 (34.52%), Postives = 94/168 (55.95%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRE-LRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSK 574
            +K+V++G  GVGKS +  +F ++ F  +   TI   + T+  N+D    K  I DTAGQE + A+   Y R   G LLV+ +  HS+F+ + ++ R+ LR        ++++GNK DL+H   VS E+ ++ +    + ++E SA    NVD AF E++    RIV K
Sbjct:    6 YKLVVVGGGGVGKSAITIQFIQSYFVTDYDPTIEDSY-TKQCNIDDVPAKLDILDTAGQEEFSAMREQYMRSGEGFLLVFALNDHSSFDEIPKFQRQILRVKDRDEFPMLMVGNKCDLKHQQQVSLEEAQNTSRNLMIPYIECSAKLRVNVDQAFHELV----RIVRK 168          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAS3_DROME (Ras-like protein 3 OS=Drosophila melanogaster GN=R PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 2.776e-19
Identity = 65/198 (32.83%), Postives = 103/198 (52.02%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRE--LRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSAVPSKERKLMSVKMCLL 661
            +K+V++G  GVGKS L  +F +  F  +   TI   +  + + VDG+    +I DTAG E++ A+   Y +   G +LVY +T  STF +++  LRE  LR     ++ ++L+GNK DL     V  E GK+ A + +  FMETSA    NV++ F +++ QI                N   P K++K     +C+L
Sbjct:    4 YKIVVLGSGGVGKSALTVQFVQCIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQD-LREQILRVKDTDDVPMVLVGNKCDLEEERVVGKELGKNLATQFNCAFMETSAKAKVNVNDIFYDLVRQI----------------NKKSPEKKQKKPKKSLCVL 183          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RANT_MOUSE (GTP-binding nuclear protein Ran, testis-specific isoform OS=Mus musculus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.776e-19
Identity = 55/162 (33.95%), Postives = 87/162 (53.70%), Query Frame = 2
Query:   50 AEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAF 535
            A+ +    FKVVL+GD G GK+  + R    EF  E  +T+GVE  T   + +   IK  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W ++L      NI ++L GNK D++ +   +      F  K++L + + SA    N +  F
Sbjct:    3 AQGEPQVQFKVVLVGDGGTGKTTFMKRHLTGEFEKEYVATLGVEVHTLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPSWHKDL-VRVCENIPIVLCGNKVDVKDMKVKAKP--ILFHRKKNLQYYDISARSNYNFEKPF 161          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RASC_DICDI (Ras-like protein rasC OS=Dictyostelium discoideum GN=rasC PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.625e-19
Identity = 61/166 (36.75%), Postives = 90/166 (54.22%), Query Frame = 2
Query:   71 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRE-LRDHTDPNIVVMLIGNKSDLRHL-VAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYR 562
            L K+V++GD GVGKS L  + T+N+F  E   TI   +  + +N+D +V    I DTAGQE Y A+   Y R   G L+VY +   ++FE V  +  + LR        +++IGNK+DL      V   +GK  A+     F+ETSA    NV+ AF  ++ +I R
Sbjct:    4 LLKLVIVGDGGVGKSALTIQLTQNQFIAEYDPTIENSYR-KQVNIDEEVYMLDILDTAGQEEYSAMRDQYIRSGRGFLIVYSIISRASFEAVTTFREQILRVKDLSTYPIVIIGNKADLPDKDRKVPPMEGKELAKSFGAPFLETSAKSRVNVEEAFFTLVREIKR 168          
The following BLAST results are available for this feature:
BLAST of CX295750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAS3_RHIRA7.304e-2034.55Ras-like protein 3 OS=Rhizomucor racemosus GN=RAS3... [more]
RAB7B_BOVIN7.304e-2033.33Ras-related protein Rab-7b OS=Bos taurus GN=RAB7B ... [more]
RAB24_DICDI9.540e-2035.22Ras-related protein Rab-24 OS=Dictyostelium discoi... [more]
RAS_EMENI1.627e-1931.18Ras-like protein OS=Emericella nidulans GN=AN0182 ... [more]
RAB7B_MOUSE1.627e-1933.75Ras-related protein Rab-7b OS=Mus musculus GN=Rab7... [more]
RAS_SCHPO2.125e-1932.12Ras-like protein 1 OS=Schizosaccharomyces pombe GN... [more]
RAS2_DROME2.125e-1934.52Ras-like protein 2 OS=Drosophila melanogaster GN=R... [more]
RAS3_DROME2.776e-1932.83Ras-like protein 3 OS=Drosophila melanogaster GN=R... [more]
RANT_MOUSE2.776e-1933.95GTP-binding nuclear protein Ran, testis-specific i... [more]
RASC_DICDI3.625e-1936.75Ras-like protein rasC OS=Dictyostelium discoideum ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05075E05SK DroRLeaf1 Citrus clementina cDNA clone C05075E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295750 ID=CX295750; Name=CX295750; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAGTGTGAAGATATAAAGTTGCAATAGCTATGGCTGGATACAGAG
CTGAAGATGACTATGATTATCTTTTTAAGGTGGTTTTGATCGGTGACTCC
GGTGTCGGCAAGTCCAATTTGCTTTCGAGGTTCACTAGGAACGAGTTTAG
TCTCGAGTCTAAGTCCACAATAGGTGTTGAGTTCGCTACTCGTAGCTTGA
ATGTCGATGGCAAAGTCATCAAAGCTCAGATTTGGGACACCGCCGGCCAA
GAAAGGTACCGTGCCATAACCAGTGCATACTACCGAGGAGCTGTCGGGGC
ACTTCTAGTGTATGACGTCACTCGGCATTCCACATTTGAAAATGTGGAAA
GGTGGTTAAGGGAGTTGAGGGATCACACAGATCCCAACATTGTGGTTATG
CTCATTGGTAATAAATCGGATCTCCGTCACCTGGTGGCTGTCTCAACAGA
GGACGGGAAATCATTTGCTGAGAAGGAATCTCTCTTCTTCATGGAAACTT
CTGCTCTGGAGGCTACTAATGTGGACAATGCATTTGCTGAAGTGCTGACT
CAAATCTACCGTATTGTGAGCAAGAAGGCCATGGAGACAGGTGAGGATGT
AGGAAATTCTGCTGTACCTTCCAAGGAGAGAAAATTGATGTCAGTAAAGA
TGTGTCTGCTGTGAAGAAGGTGGCTGCTGCTCACT
back to top