CX295750

Overview
NameCX295750
Unique NameCX295750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1753 contig Ccv1_Contig1753:10..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAN_TETPY (GTP-binding nuclear protein Ran OS=Tetrahymena pyriformis PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.625e-19
Identity = 52/161 (32.30%), Postives = 88/161 (54.66%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQI 556
            FK+VL+GD GVGK+  ++R    EF     +T GV  +   L+     I+  IWDTAGQE+   +   YY GA  A++++DVT   T++N+ +W ++L    + N+ ++L+GNK D +     + +   +F  K SL + + SA      +  F  +L ++
Sbjct:   12 FKLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMILHTTKGAIRFNIWDTAGQEKLGGLREGYYIGADAAIMMFDVTSRITYKNIPKWHKDLTRICE-NVPIVLVGNKVDSKDSKVKARQ--ITFHRKRSLQYYDVSAKSNYQYEKPFLWILRKL 169          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAS_BOTFU (Ras-like protein OS=Botryotinia fuckeliana GN=ras1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.734e-19
Identity = 56/164 (34.15%), Postives = 91/164 (55.49%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV-VMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYR 562
            +K+V++G  GVGKS L  +  ++ F  E   TI   +  + + +D +V    + DTAGQE Y A+   Y R   G LLVY +T   +FE +  + +++    D +   ++++GNK DL     VS ++G+  A+     F+ETSA    NVDNAF +++ +I R
Sbjct:    9 YKLVVVGGGGVGKSCLTIQLIQSHFVDEYDPTIEDSYRKQCV-IDEEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQILRVKDKDYFPIIVVGNKCDLEGERQVSKQEGQQLADDFGCKFIETSAKSRINVDNAFYDIVREIRR 171          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RASM_HUMAN (Ras-related protein M-Ras OS=Homo sapiens GN=MRAS PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.734e-19
Identity = 59/173 (34.10%), Postives = 99/173 (57.23%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLR-ELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALE-ATNVDNAFAEVLTQIYRIVSKKAME 586
            +K+V++GD GVGKS L  +F +  F  +   TI   +   +  +D +     + DTAGQE + A+   Y R   G L+VY VT  ++FE+V+R+ +  LR     +  ++L+ NK DL HL  ++ E GK  A K ++ ++ETSA +   NVD AF +++  I + + +K+ +
Sbjct:   14 YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHT-EIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKITREQGKEMATKHNIPYIETSAKDPPLNVDKAFHDLVRVIRQQIPEKSQK 185          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RANT_RAT (GTP-binding nuclear protein Ran, testis-specific isoform OS=Rattus norvegicus GN=Rasl2-9 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.183e-19
Identity = 53/154 (34.42%), Postives = 84/154 (54.55%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAF 535
            FK+VL+GD G GK+  + R    EF  E  +T+GVE  T   + +   IK  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W ++L      NI ++L GNK D++ +   +      F  K++L + + SA    N +  F
Sbjct:   11 FKLVLVGDGGTGKTTFMKRHLTGEFEKEYVATLGVEVHTLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPSWHKDL-VRVCENIPIVLCGNKVDIKDMKVKAKP--ILFHRKKNLQYYDISAKSNYNFEKPF 161          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAN4_ARATH (GTP-binding nuclear protein Ran-4 OS=Arabidopsis thaliana GN=RAN4 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.183e-19
Identity = 53/161 (32.92%), Postives = 84/161 (52.17%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQI 556
            FK++++GD G GK+  L R    EF   ++ T+GV+        +   I+ + WDTAGQE+Y  +  AYY     A++++DVT   T+ N++RW R+LR     NI ++L GNK D+            S+  K+ L + E SA    N +  F  +  +I
Sbjct:   14 FKLLIVGDGGTGKTTFLKRHLTGEFEHNTEPTLGVDIYPLDFFTNRGKIRFECWDTAGQEKYSGLKDAYYIHGQCAIIMFDVTARHTYMNIDRWYRDLR-RVCKNIPIVLCGNKVDVPSRQIKPKH--VSYHRKKCLQYYEMSAKNNCNFEKPFLYLARRI 171          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RABL_DICDI (Ras-related protein RabL OS=Dictyostelium discoideum GN=rabL PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 6.183e-19
Identity = 52/180 (28.89%), Postives = 96/180 (53.33%), Query Frame = 2
Query:   71 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDL-RHLVAVSTEDGKSFAEK-------ESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAME 586
            + K++ +GDS VGK++L   +   E+      +IG ++  + L V+ K +   +WDT GQER++A +  Y+RGA    L +D+    +F N+ +W+ E+  +   NI  +L+G KSD+ R   ++S    + + +        + + + ETSA  + NV        T++Y + +K A+E
Sbjct:    7 MLKIITLGDSNVGKTSLFYHYVNGEYRYNRPPSIGPDYFIKELKVENKHVFLMVWDTCGQERFQAFSPPYFRGANCYTLCFDIHNEESFINLGKWMDEIIKYCYGNIPFVLVGTKSDIPRTDKSISKARIEQWCKNIEDQGIIDKVHYFETSAKLSQNV--------TELYNVAAKLALE 178          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAS_LACBI (Ras-like protein OS=Laccaria bicolor PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.076e-19
Identity = 61/185 (32.97%), Postives = 97/185 (52.43%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV-VMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSAVPSK 625
            +K+V++G  G GKS L  +  ++ F  E   TI   +  + + +D +V    + DTAGQE Y A+   Y R   G LLVY +T   +FE +  + +++    D +   ++++GNK DL     VS ++G+S A +    F+ETSA    NV+NAF +++ +I R    K M      G  A  SK
Sbjct:    9 YKLVVVGGGGEGKSCLTIQLIQSHFVDEYDPTIEESYRKQCV-IDDEVALLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSITSRQSFEEIMTFQQQILRVKDKDYFPIIVVGNKCDLDKERVVSKQEGESLARQFGCKFIETSAKSRINVENAFYDLVREIRRY--NKEMSNPSGFGARAPDSK 190          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RASD_DICDI (Ras-like protein rasD OS=Dictyostelium discoideum GN=rasD PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 8.076e-19
Identity = 55/162 (33.95%), Postives = 89/162 (54.94%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRE-LRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQI 556
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + +++D +     I DTAGQE Y A+   Y R   G L VY +T  S+++ +  +  + LR      + ++L+GNK+DL H   VS  +G+  A+  +  FME+SA    NV+ AF  ++ +I
Sbjct:    4 YKLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIEDSYR-KQVSIDDETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSYDEIASFREQILRVKDKDRVPLILVGNKADLDHERQVSVNEGQELAKGFNCPFMESSAKSRINVEEAFYSLVREI 164          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAN_DANRE (GTP-binding nuclear protein Ran OS=Danio rerio GN=ran PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.076e-19
Identity = 57/164 (34.76%), Postives = 88/164 (53.66%), Query Frame = 2
Query:   50 AEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDL--RHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAF 535
            AE++    FK+VL+GD G GK+  + R    EF  +  +T+GVE      + +   IK  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W R+L      NI ++L GNK D+  R + A S      F  K++L + + SA    N +  F
Sbjct:    2 AENEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 160          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAS_LENED (Ras-like protein OS=Lentinula edodes PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.055e-18
Identity = 59/174 (33.91%), Postives = 93/174 (53.45%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRE-LRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETG 592
            +K+V++G  GVGKS L  +F ++ F  E   TI   +  + + +D +V    + DTAGQE Y A+   Y R   G LLVY +T  ++FE +  + ++ LR        V+++ NK DL +   V   +G+  A      F+ETSA    NVD AF +++ +I R  +K+   TG
Sbjct:   11 YKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCV-IDDEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISTFHQQILRVKDQDTFPVVVVANKCDLEYERQVGMNEGRDLARHFGCKFVETSAKVRINVDQAFQDLVREI-RKYNKEQQTTG 182          
The following BLAST results are available for this feature:
BLAST of CX295750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAN_TETPY3.625e-1932.30GTP-binding nuclear protein Ran OS=Tetrahymena pyr... [more]
RAS_BOTFU4.734e-1934.15Ras-like protein OS=Botryotinia fuckeliana GN=ras1... [more]
RASM_HUMAN4.734e-1934.10Ras-related protein M-Ras OS=Homo sapiens GN=MRAS ... [more]
RANT_RAT6.183e-1934.42GTP-binding nuclear protein Ran, testis-specific i... [more]
RAN4_ARATH6.183e-1932.92GTP-binding nuclear protein Ran-4 OS=Arabidopsis t... [more]
RABL_DICDI6.183e-1928.89Ras-related protein RabL OS=Dictyostelium discoide... [more]
RAS_LACBI8.076e-1932.97Ras-like protein OS=Laccaria bicolor PE=2 SV=1[more]
RASD_DICDI8.076e-1933.95Ras-like protein rasD OS=Dictyostelium discoideum ... [more]
RAN_DANRE8.076e-1934.76GTP-binding nuclear protein Ran OS=Danio rerio GN=... [more]
RAS_LENED1.055e-1833.91Ras-like protein OS=Lentinula edodes PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionC05075E05SK DroRLeaf1 Citrus clementina cDNA clone C05075E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295750 ID=CX295750; Name=CX295750; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAGTGTGAAGATATAAAGTTGCAATAGCTATGGCTGGATACAGAG
CTGAAGATGACTATGATTATCTTTTTAAGGTGGTTTTGATCGGTGACTCC
GGTGTCGGCAAGTCCAATTTGCTTTCGAGGTTCACTAGGAACGAGTTTAG
TCTCGAGTCTAAGTCCACAATAGGTGTTGAGTTCGCTACTCGTAGCTTGA
ATGTCGATGGCAAAGTCATCAAAGCTCAGATTTGGGACACCGCCGGCCAA
GAAAGGTACCGTGCCATAACCAGTGCATACTACCGAGGAGCTGTCGGGGC
ACTTCTAGTGTATGACGTCACTCGGCATTCCACATTTGAAAATGTGGAAA
GGTGGTTAAGGGAGTTGAGGGATCACACAGATCCCAACATTGTGGTTATG
CTCATTGGTAATAAATCGGATCTCCGTCACCTGGTGGCTGTCTCAACAGA
GGACGGGAAATCATTTGCTGAGAAGGAATCTCTCTTCTTCATGGAAACTT
CTGCTCTGGAGGCTACTAATGTGGACAATGCATTTGCTGAAGTGCTGACT
CAAATCTACCGTATTGTGAGCAAGAAGGCCATGGAGACAGGTGAGGATGT
AGGAAATTCTGCTGTACCTTCCAAGGAGAGAAAATTGATGTCAGTAAAGA
TGTGTCTGCTGTGAAGAAGGTGGCTGCTGCTCACT
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