CX295750

Overview
NameCX295750
Unique NameCX295750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RASL_COPCI (24 kDa Ras-like protein OS=Coprinopsis cinerea GN=CC-RAS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.055e-18
Identity = 55/162 (33.95%), Postives = 90/162 (55.56%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRE-LRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQI 556
            +K+V++G  GVGKS L  +F ++ F  E   TI   +  + + +D +V    + DTAGQE Y A+   Y R   G LLVY +T  ++FE +  + ++ LR     +  V+++ NK DL +   V   +G+  A+     F+ETSA +  NVD AF+ ++ +I
Sbjct:   11 YKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCI-IDDEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRNSFEEISIFHQQILRVKDQDSFPVIVVANKCDLEYERQVGMNEGRDLAKHFGCKFIETSAKQRINVDEAFSNLVREI 171          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RASG_DICDI (Ras-like protein rasG OS=Dictyostelium discoideum GN=rasG PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.055e-18
Identity = 61/197 (30.96%), Postives = 98/197 (49.75%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRE-LRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSAVPSKERKLMSVKMCLL 661
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + +D +     I DTAGQE Y A+   Y R   G L VY +T  S+F+ +  +  + LR      + ++++GNK DL     V+T +G+  A+     F+ETSA    NV+ AF  ++ +I +           D+   + P K +K   +K C L
Sbjct:    4 YKLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIEDSYR-KQVTIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFDEIASFREQILRVKDKDRVPMIVVGNKCDLESDRQVTTGEGQDLAKSFGSPFLETSAKIRVNVEEAFYSLVREIRK-----------DLKGDSKPEKGKKKRPLKACTL 188          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAN_TETTH (GTP-binding nuclear protein Ran OS=Tetrahymena thermophila PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.055e-18
Identity = 53/161 (32.92%), Postives = 87/161 (54.04%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQI 556
            FK+VL+GD GVGK+  ++R    EF     +T GV  +   L      I+  IWDTAGQE+   +   YY GA  A++++DVT   T++N+ +W ++L    + NI ++L+GNK D +     + +   +F  K SL + + SA      +  F  +L ++
Sbjct:   12 FKLVLVGDGGVGKTTFVTRHQTGEFEKRYIATQGVNVSNMVLYTTKGPIRFNIWDTAGQEKLGGLREGYYIGANAAIMMFDVTSRITYKNIPKWHKDLTRICE-NIPIVLVGNKVDSKDRKVKARQ--ITFHRKRSLQYYDVSAKSNYQYEKPFLWILRKL 169          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RALA_DROME (Ras-related protein Ral-a OS=Drosophila melanogaster GN=Rala PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.055e-18
Identity = 60/190 (31.58%), Postives = 102/190 (53.68%), Query Frame = 2
Query:   71 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRE-LRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSAVPSKERKL 637
            L KV+++G  GVGKS L  +F  +EF +E       +   + + +DG+ ++  I DTAGQE Y AI   Y+R   G L V+ +T   +F+  + +  + LR   D +I  +L+GNK DL     V   + +  A++ ++ ++ETSA    NVD  F +++ +I    S+K  ++    G +    K+R+L
Sbjct:   11 LHKVIMVGSGGVGKSALTLQFMYDEF-VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITDDESFQATQEFREQILRVKNDESIPFLLVGNKCDLNDKRKVPLSECQLRAQQWAVPYVETSAKTRENVDKVFFDLMREIR---SRKTEDSKATSGRAKDRCKKRRL 196          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: DJ27A_XENLA (DnaJ homolog subfamily C member 27-A OS=Xenopus laevis GN=dnajc27-A PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.055e-18
Identity = 46/158 (29.11%), Postives = 85/158 (53.80%), Query Frame = 2
Query:   77 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDP-----NIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAF 535
            KV+ +G++ VGKS ++ R+    F  + ++TIG+++    +++  + IK  I+D AG   +  + + +Y+   G +LVYDV    TFE+++ WL E++    P     NIV  +  NK D     +V   +G+ ++E +   + ETSA     ++  F
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVPKYQATIGIDYGVTKVHIKDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGHKETFESLDGWLAEMKQELGPQGNIDNIVFAVCANKIDSTKHRSVDESEGRLWSESKGFLYFETSAQSGEGINEMF 175          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RSR1_CANAL (Ras-related protein RSR1 OS=Candida albicans GN=RSR1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.378e-18
Identity = 61/166 (36.75%), Postives = 92/166 (55.42%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRE--LRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLF-FMETSALEATNVDNAFAEVLTQIYR 562
            +KVV++G  GVGKS++  +F +  +      TI   +  + + VDG+    +I DTAG  ++ A+   Y +   G LLVY VT  ++ + +   LRE  LR     N+ ++L+GNK DL     +S EDG   ++   L  F ETSA+  TNVD AF +V+ QI R
Sbjct:    4 YKVVVLGAGGVGKSSITVQFVQGVYVESYDPTIEDSYR-KQIEVDGRACDLEILDTAGVAQFTAMRELYIKSGKGFLLVYSVTDENSLKELLA-LREQVLRIKDSDNVPMVLVGNKCDLEDDRVLSIEDGVKVSQDWGLVPFYETSAMYKTNVDEAFIDVVRQIMR 167          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAN_SALSA (GTP-binding nuclear protein Ran OS=Salmo salar GN=ran PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.378e-18
Identity = 57/164 (34.76%), Postives = 87/164 (53.05%), Query Frame = 2
Query:   50 AEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDL--RHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAF 535
            AE +    FK+VL+GD G GK+  + R    EF  +  +T+GVE      + +   IK  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W R+L      NI ++L GNK D+  R + A S      F  K++L + + SA    N +  F
Sbjct:    2 AEGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGAIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 160          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAN_CARAU (GTP-binding nuclear protein Ran OS=Carassius auratus GN=ran PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.378e-18
Identity = 57/164 (34.76%), Postives = 88/164 (53.66%), Query Frame = 2
Query:   50 AEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDL--RHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAF 535
            AE++    FK+VL+GD G GK+  + R    EF  +  +T+GVE      + +   IK  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W R+L      NI ++L GNK D+  R + A S      F  K++L + + SA    N +  F
Sbjct:    2 AENEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKYNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 160          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB7B_HUMAN (Ras-related protein Rab-7b OS=Homo sapiens GN=RAB7B PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.378e-18
Identity = 50/156 (32.05%), Postives = 89/156 (57.05%), Query Frame = 2
Query:   77 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDP---NIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAF 535
            K++++G  GVGK++LL ++    F  E ++T+G    ++ + +    +K QIWDT GQER+R++ S +Y+G+ G +L +DVT   +FE ++ W  ++     P   +  ++L+GNK DL     V  E  + +  ++ + + E SA    NV  AF
Sbjct:   10 KLIIVGAIGVGKTSLLHQYVHKTFYEEYQTTLGASILSKIIILGDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIWRGDVLAKIVPMEQSYPMVLLGNKIDLADR-KVPQEVAQGWCREKDIPYFEVSAKNDINVVQAF 164          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: GSP2_YEAST (GTP-binding nuclear protein GSP2/CNR2 OS=Saccharomyces cerevisiae GN=GSP2 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.378e-18
Identity = 56/155 (36.13%), Postives = 84/155 (54.19%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLR-HLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAF 535
            FK+VL+GD G GK+  + R    EF  +  +TIGVE    S   +   IK  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W R+L      NI ++L GNK D++   V   T    +F  K++L + + SA    N +  F
Sbjct:   14 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKERKVKAKT---ITFHRKKNLQYYDISAKSNYNFEKPF 164          
The following BLAST results are available for this feature:
BLAST of CX295750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RASL_COPCI1.055e-1833.9524 kDa Ras-like protein OS=Coprinopsis cinerea GN=... [more]
RASG_DICDI1.055e-1830.96Ras-like protein rasG OS=Dictyostelium discoideum ... [more]
RAN_TETTH1.055e-1832.92GTP-binding nuclear protein Ran OS=Tetrahymena the... [more]
RALA_DROME1.055e-1831.58Ras-related protein Ral-a OS=Drosophila melanogast... [more]
DJ27A_XENLA1.055e-1829.11DnaJ homolog subfamily C member 27-A OS=Xenopus la... [more]
RSR1_CANAL1.378e-1836.75Ras-related protein RSR1 OS=Candida albicans GN=RS... [more]
RAN_SALSA1.378e-1834.76GTP-binding nuclear protein Ran OS=Salmo salar GN=... [more]
RAN_CARAU1.378e-1834.76GTP-binding nuclear protein Ran OS=Carassius aurat... [more]
RAB7B_HUMAN1.378e-1832.05Ras-related protein Rab-7b OS=Homo sapiens GN=RAB7... [more]
GSP2_YEAST1.378e-1836.13GTP-binding nuclear protein GSP2/CNR2 OS=Saccharom... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05075E05SK DroRLeaf1 Citrus clementina cDNA clone C05075E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295750 ID=CX295750; Name=CX295750; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAGTGTGAAGATATAAAGTTGCAATAGCTATGGCTGGATACAGAG
CTGAAGATGACTATGATTATCTTTTTAAGGTGGTTTTGATCGGTGACTCC
GGTGTCGGCAAGTCCAATTTGCTTTCGAGGTTCACTAGGAACGAGTTTAG
TCTCGAGTCTAAGTCCACAATAGGTGTTGAGTTCGCTACTCGTAGCTTGA
ATGTCGATGGCAAAGTCATCAAAGCTCAGATTTGGGACACCGCCGGCCAA
GAAAGGTACCGTGCCATAACCAGTGCATACTACCGAGGAGCTGTCGGGGC
ACTTCTAGTGTATGACGTCACTCGGCATTCCACATTTGAAAATGTGGAAA
GGTGGTTAAGGGAGTTGAGGGATCACACAGATCCCAACATTGTGGTTATG
CTCATTGGTAATAAATCGGATCTCCGTCACCTGGTGGCTGTCTCAACAGA
GGACGGGAAATCATTTGCTGAGAAGGAATCTCTCTTCTTCATGGAAACTT
CTGCTCTGGAGGCTACTAATGTGGACAATGCATTTGCTGAAGTGCTGACT
CAAATCTACCGTATTGTGAGCAAGAAGGCCATGGAGACAGGTGAGGATGT
AGGAAATTCTGCTGTACCTTCCAAGGAGAGAAAATTGATGTCAGTAAAGA
TGTGTCTGCTGTGAAGAAGGTGGCTGCTGCTCACT
back to top