CX295750

Overview
NameCX295750
Unique NameCX295750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1753 contig Ccv1_Contig1753:10..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: GSP1_YEAST (GTP-binding nuclear protein GSP1/CNR1 OS=Saccharomyces cerevisiae GN=GSP1 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.378e-18
Identity = 56/155 (36.13%), Postives = 84/155 (54.19%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLR-HLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAF 535
            FK+VL+GD G GK+  + R    EF  +  +TIGVE    S   +   IK  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W R+L      NI ++L GNK D++   V   T    +F  K++L + + SA    N +  F
Sbjct:   13 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLSFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKERKVKAKT---ITFHRKKNLQYYDISAKSNYNFEKPF 163          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAS_CRYNE (Ras-like protein OS=Cryptococcus neoformans GN=RAS1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.799e-18
Identity = 58/164 (35.37%), Postives = 89/164 (54.27%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRE-LRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYR 562
            +K+V++G  GVGKS L  +F ++ F  E   TI   +  + + +D +V    + DTAGQE Y A+   Y R   G LLVY +T  S+FE V  + ++ LR        V+++ NK DL +   V   +G+  A++ +   +ETSA +  NVD AF  V+  I R
Sbjct:   10 YKLVVVGGGGVGKSALTIQFIQSHFVDEYDPTIEDSYRKQCI-IDEEVALLDVLDTAGQEEYGAMREQYMRTGEGFLLVYSITSRSSFEEVSTFHQQILRVKDKDYFPVVVVANKCDLEYERQVQPHEGRDLAKRFNAQCIETSAKQRVNVDEAFIAVVRAIRR 172          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RASX_DICDI (Ras-like protein rasX OS=Dictyostelium discoideum GN=rasX PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.799e-18
Identity = 64/211 (30.33%), Postives = 109/211 (51.66%), Query Frame = 2
Query:   35 MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIV-VMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQI---YRIVSKKAMETGEDV--GNSAVPSKERKLMSVK 649
            M+GY+  +    L K+ ++GD GVGK+ +  +F  N F      TI   +  + + +D +V    I DTAGQ+   A+   + R   G +LVY VT  S+F+ +  +  ++    D + V +M+IGNKSDL     V+ ++GK  A    + FME SA   +N++  F E +  +   Y + +K   + G+D+   NS +    +K+ + K
Sbjct:    1 MSGYKNNN----LVKLCIMGDGGVGKTAVTIQFISNHFVHYYDPTIEDSYRKQCV-IDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFVLVYSVTSRSSFDQIAFFKEQINRVLDSDDVPIMMIGNKSDLDDERQVTYQEGKDLARCFGMSFMEVSAKTRSNIEEVFNETVRCVKRKYDLHNKDKSKDGKDIKKKNSIIKKLNQKVNNTK 206          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RABO_DICDI (Ras-related protein RabO OS=Dictyostelium discoideum GN=rabO PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.799e-18
Identity = 59/172 (34.30%), Postives = 85/172 (49.42%), Query Frame = 2
Query:   59 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTD-PNIVVMLIGNKSDLRHLVAVSTEDGKSFAE------------KESLFFMETSALEATNVDNAF 535
            D   L +VVL+GD  VGK+     F   +F       IGV+F  + + VD + ++ Q+WDT GQER++ IT +Y+R     LL + V    +FEN++ W     +  D  N  V+L+GNK DL     V T   K  AE            K S+ + ETSA    N++  F
Sbjct:    4 DNSILIRVVLLGDYCVGKTTTGFVFDGKQFDFSRNCNIGVDFFVKHIVVDNQCVRLQVWDTGGQERFKTITRSYFRNTSCCLLFFSVDDQKSFENIDMWYSLAFEKYDLLNYPVVLVGNKIDLPQEKHVIT---KKMAEEWCKNQQTKLNLKFSIPYFETSAKNNININEIF 172          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RASZ_DICDI (Ras-like protein rasZ OS=Dictyostelium discoideum GN=rasZ PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.350e-18
Identity = 62/212 (29.25%), Postives = 108/212 (50.94%), Query Frame = 2
Query:   35 MAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTD-PNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYR----IVSKKAMETGEDV--GNSAVPSKERKLMSVK 649
            MA Y+  +    L ++ ++GD GVGK+ +  +F  N F      TI   +  + + +D +V    I DTAGQ+   A+   + R   G +LVY +T  S+F+ V+ +  ++    D  ++ +M+IGNKSDL     V+ ++GK  A    + FME SA    N++  F E +  + R    ++ K   + G+D+   NS +    +K+ + K
Sbjct:    1 MASYKNNN----LVRLCIMGDGGVGKTAVTIQFISNHFVYYYDPTIEDSYRKQCV-IDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFVLVYSITSRSSFDQVQFFREQIIRVLDRDDVPIMMIGNKSDLDDERQVTYQEGKDLARCLGMSFMEVSAKSRANIEEVFNETVRSVKRREESLLKKDKSKDGKDIKKKNSIIKKLNQKVNNTK 207          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAS2_RHIRA (Ras-like protein 2 OS=Rhizomucor racemosus GN=RAS2 PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.350e-18
Identity = 54/169 (31.95%), Postives = 91/169 (53.85%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTD-PNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKK 577
            +K+V++GD GVGKS +  +F ++ F  E   TI   +  + L +D +     I DTAGQE Y A+   + R   G +L+Y +T + TFE V++   ++    D  +  ++L+GNK DL     V T  G+  A++ +  F E SA +   + +AF  ++ +I R   +K
Sbjct:   12 YKIVMVGDGGVGKSAMTIQFIQSTFVDEYDPTIEDSYRKQCL-IDSECAMLDILDTAGQEEYSAMRERFMRNGEGFVLIYSITSYHTFEQVQKLHEQIARVKDLEHFPMVLVGNKCDLEQDRQVPTSAGRDLAKQYNCQFFEASAKQNVRIQDAFHGLVREIRRSQQEK 179          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAS1_NEUCR (Protein ras-1 OS=Neurospora crassa GN=ras-1 PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.350e-18
Identity = 59/181 (32.60%), Postives = 98/181 (54.14%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRE-LRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSA 613
            +K+V++G  GVGKS L  +  +  F  E   TI   +  +   +D +V    I DTAGQE Y A+   Y R   G LLV+ +    +FE +  + ++ LR     +  ++++GNK DLR    VS ++G++ A +    ++ETSA    NV+NAF +++    R + K+  + GE VG ++
Sbjct:    9 YKLVVVGGGGVGKSCLTIQLIQGHFLDEYDPTIEDSYR-KQCTIDNEVALLDILDTAGQEEYSAMREQYMRTGEGFLLVFAINSRESFEEIRIYQQQILRVKDRDSFPMIIVGNKYDLRGERVVSEQEGQALAAEFGTKYIETSAKTQHNVENAFYDLV----REIRKEDKKLGEKVGGTS 184          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAP2A_PONAB (Ras-related protein Rap-2a OS=Pongo abelii GN=RAP2A PE=2 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.350e-18
Identity = 55/162 (33.95%), Postives = 89/162 (54.94%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLREL-RDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQI 556
            +KVV++G  GVGKS L  +F    F  +   TI  +F  + + VD      +I DTAG E++ ++   Y +   G +LVY +    +F++++    ++ R      + V+L+GNK DL     VS+ +G++ AE+    FMETSA   T VD  FAE++ Q+
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSNEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAP2A_MOUSE (Ras-related protein Rap-2a OS=Mus musculus GN=Rap2a PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.350e-18
Identity = 55/162 (33.95%), Postives = 89/162 (54.94%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLREL-RDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQI 556
            +KVV++G  GVGKS L  +F    F  +   TI  +F  + + VD      +I DTAG E++ ++   Y +   G +LVY +    +F++++    ++ R      + V+L+GNK DL     VS+ +G++ AE+    FMETSA   T VD  FAE++ Q+
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSNEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAP2A_HUMAN (Ras-related protein Rap-2a OS=Homo sapiens GN=RAP2A PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.350e-18
Identity = 55/162 (33.95%), Postives = 89/162 (54.94%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLREL-RDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQI 556
            +KVV++G  GVGKS L  +F    F  +   TI  +F  + + VD      +I DTAG E++ ++   Y +   G +LVY +    +F++++    ++ R      + V+L+GNK DL     VS+ +G++ AE+    FMETSA   T VD  FAE++ Q+
Sbjct:    4 YKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164          
The following BLAST results are available for this feature:
BLAST of CX295750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSP1_YEAST1.378e-1836.13GTP-binding nuclear protein GSP1/CNR1 OS=Saccharom... [more]
RAS_CRYNE1.799e-1835.37Ras-like protein OS=Cryptococcus neoformans GN=RAS... [more]
RASX_DICDI1.799e-1830.33Ras-like protein rasX OS=Dictyostelium discoideum ... [more]
RABO_DICDI1.799e-1834.30Ras-related protein RabO OS=Dictyostelium discoide... [more]
RASZ_DICDI2.350e-1829.25Ras-like protein rasZ OS=Dictyostelium discoideum ... [more]
RAS2_RHIRA2.350e-1831.95Ras-like protein 2 OS=Rhizomucor racemosus GN=RAS2... [more]
RAS1_NEUCR2.350e-1832.60Protein ras-1 OS=Neurospora crassa GN=ras-1 PE=2 S... [more]
RAP2A_PONAB2.350e-1833.95Ras-related protein Rap-2a OS=Pongo abelii GN=RAP2... [more]
RAP2A_MOUSE2.350e-1833.95Ras-related protein Rap-2a OS=Mus musculus GN=Rap2... [more]
RAP2A_HUMAN2.350e-1833.95Ras-related protein Rap-2a OS=Homo sapiens GN=RAP2... [more]

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Properties
Property NameValue
Genbank descriptionC05075E05SK DroRLeaf1 Citrus clementina cDNA clone C05075E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295750 ID=CX295750; Name=CX295750; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAGTGTGAAGATATAAAGTTGCAATAGCTATGGCTGGATACAGAG
CTGAAGATGACTATGATTATCTTTTTAAGGTGGTTTTGATCGGTGACTCC
GGTGTCGGCAAGTCCAATTTGCTTTCGAGGTTCACTAGGAACGAGTTTAG
TCTCGAGTCTAAGTCCACAATAGGTGTTGAGTTCGCTACTCGTAGCTTGA
ATGTCGATGGCAAAGTCATCAAAGCTCAGATTTGGGACACCGCCGGCCAA
GAAAGGTACCGTGCCATAACCAGTGCATACTACCGAGGAGCTGTCGGGGC
ACTTCTAGTGTATGACGTCACTCGGCATTCCACATTTGAAAATGTGGAAA
GGTGGTTAAGGGAGTTGAGGGATCACACAGATCCCAACATTGTGGTTATG
CTCATTGGTAATAAATCGGATCTCCGTCACCTGGTGGCTGTCTCAACAGA
GGACGGGAAATCATTTGCTGAGAAGGAATCTCTCTTCTTCATGGAAACTT
CTGCTCTGGAGGCTACTAATGTGGACAATGCATTTGCTGAAGTGCTGACT
CAAATCTACCGTATTGTGAGCAAGAAGGCCATGGAGACAGGTGAGGATGT
AGGAAATTCTGCTGTACCTTCCAAGGAGAGAAAATTGATGTCAGTAAAGA
TGTGTCTGCTGTGAAGAAGGTGGCTGCTGCTCACT
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