CX295750

Overview
NameCX295750
Unique NameCX295750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1753 contig Ccv1_Contig1753:10..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAN_CANFA (GTP-binding nuclear protein Ran OS=Canis familiaris GN=RAN PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 5.235e-18
Identity = 56/164 (34.15%), Postives = 87/164 (53.05%), Query Frame = 2
Query:   50 AEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDL--RHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAF 535
            A+ +    FK+VL+GD G GK+  + R    EF  +  +T+GVE      + +   IK  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W R+L      NI ++L GNK D+  R + A S      F  K++L + + SA    N +  F
Sbjct:    3 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAN_BOVIN (GTP-binding nuclear protein Ran OS=Bos taurus GN=RAN PE=2 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 5.235e-18
Identity = 56/164 (34.15%), Postives = 87/164 (53.05%), Query Frame = 2
Query:   50 AEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDL--RHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAF 535
            A+ +    FK+VL+GD G GK+  + R    EF  +  +T+GVE      + +   IK  +WDTAGQE++  +   YY  A  A++++DVT   T++NV  W R+L      NI ++L GNK D+  R + A S      F  K++L + + SA    N +  F
Sbjct:    3 AQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIPIVLCGNKVDIKDRKVKAKSI----VFHRKKNLQYYDISAKSNYNFEKPF 161          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: DJC27_DANRE (DnaJ homolog subfamily C member 27 OS=Danio rerio GN=dnajc27 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.235e-18
Identity = 48/175 (27.43%), Postives = 87/175 (49.71%), Query Frame = 2
Query:   47 RAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTD-----PNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQI 556
            R E+      KV+ +G++ VGKS ++ R+    F  +  +TIG+++    + V  + IK  I+D AG   +  + + +Y+ + G +LVYDV    +F+ ++ WL E++          NI+ ++  NK DL     V   +G+ +AE     + ETSA     ++  F    + I
Sbjct:    8 RRENKKSLRVKVISLGNAEVGKSCIIKRYCEKRFVPKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFYEVRNEFYKDSQGVILVYDVGLRESFDALDSWLTEMKQEMGSQANMENIIFVVCANKVDLTKRRVVDESEGRLWAESRGFHYFETSAQSGEGINEMFQSFFSSI 182          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: DJC27_CHICK (DnaJ homolog subfamily C member 27 OS=Gallus gallus GN=DNAJC27 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.235e-18
Identity = 50/173 (28.90%), Postives = 87/173 (50.29%), Query Frame = 2
Query:   32 AMAGYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDP-----NIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAF 535
            A A  R E       KV+ +G++ VGKS ++ R+    F  +  +TIG+++    + V  + IK  I+D AG   +  + + +Y+   G +LVYDV +  +F+ ++ WL E++    P     NIV ++  NK D     +V   +G+ +AE     + ETSA     ++  F
Sbjct:    3 ANAPKRKEARKSLRIKVISMGNAEVGKSCIIKRYCEKRFVPKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKESFDALDAWLAEMKQELGPHGNMDNIVFVVCANKIDCTKHRSVDESEGRLWAESRGFLYFETSAQTGEGINEMF 175          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: DJ27B_XENLA (DnaJ homolog subfamily C member 27-B OS=Xenopus laevis GN=dnajc27-B PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.235e-18
Identity = 46/168 (27.38%), Postives = 86/168 (51.19%), Query Frame = 2
Query:   77 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDP--------NIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQI 556
            KV+ +G++ VGKS ++ R+    F  + ++TIG+++    + +  + IK  I+D AG   +  + + +Y+   G +LVYDV +  +FE+++ WL E++    P        NIV  +  NK D      V   +G+ ++E +   + ETSA     ++  F    + I
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVPKYQATIGIDYGVTKVQIKDREIKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKESFESLDAWLAEMKQELGPQINIDNLDNIVFAVCANKIDSTKHRCVDESEGRLWSESKGFLYFETSAQSGEGINEMFQAFYSSI 185          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: YPT10_YEAST (GTP-binding protein YPT10 OS=Saccharomyces cerevisiae GN=YPT10 PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.836e-18
Identity = 60/194 (30.93%), Postives = 102/194 (52.58%), Query Frame = 2
Query:   77 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDG------KVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDL---RHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSAVPSKER 631
            KVVL+GDS VGK+++++R    +F  +  +TIG  F T+++ V        K I  +IWDTAGQERY+++   YYR A  AL+V+++   S+ +  + W ++L+D       V+++GNK DL    H   V+       AE + L ++  SA    N D    +++  +      K +    + GN    +K++
Sbjct:    6 KVVLLGDSSVGKTSIVTRLKSGKFLAKHAATIGAAFITKTIEVPSNDSSTEKRIHMEIWDTAGQERYKSLVPMYYRDANIALIVFELGDVSSLQCAKTWFQDLQDRAQ-GTQVIIVGNKYDLVCEEHSGEVTIP-----AELQGLPYVAVSAKTGYNFD-TLNKIIISLVPESQFKTLSKNNEQGNILEINKKK 192          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAS1_PHYPO (Ras-like protein 1 OS=Physarum polycephalum GN=RAS1 PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.836e-18
Identity = 54/162 (33.33%), Postives = 86/162 (53.09%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRE-LRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQI 556
            +K+V++G  GVGKS L  +  +N F  E   TI   +  + + +D +     I DTAGQE Y A+   Y R   G L VY +T  S+F+ +  +  + LR      + ++++GNK DL     V+T +G+  A      FMETSA    NV+ +F +++ +I
Sbjct:    4 YKLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIEDSYR-KQVTIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFDEIASFREQILRVKDKDKVPMIVVGNKCDLEGERQVTTGEGQDLARSFGCPFMETSAKSRVNVEESFYQLVREI 164          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAS1_CANAL (Ras-like protein 1 OS=Candida albicans GN=RAS1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 6.836e-18
Identity = 57/170 (33.53%), Postives = 91/170 (53.53%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRE-LRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKA 580
            +K+V++G  GVGKS L  +  ++ F  E   TI   +  +   +D + +   + DTAGQE Y A+   Y R   G LLVY +   ++F+ +  +  + LR     N+ V+++GNK DL     VS EDG + A   +  F+ETSA +  NV+ AF  ++  I +  +K A
Sbjct:    5 YKLVVVGGGGVGKSALTIQLIQSHFVDEYDPTIEDSYR-KQCTIDDQQVLLDVLDTAGQEEYSAMREQYMRTGEGFLLVYSINSLNSFQELNSFYDQILRVKDSDNVPVLVVGNKCDLEMERQVSYEDGLALANSFNCPFLETSAKQRINVEEAFYGLVRNINQYNAKIA 173          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: GSP1_ASHGO (GTP-binding nuclear protein GSP1/Ran OS=Ashbya gossypii GN=GSP1 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.929e-18
Identity = 54/155 (34.84%), Postives = 83/155 (53.55%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLR-HLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAF 535
            FK+VL+GD G GK+  + R    EF  +  +TIGVE    +   +   IK  +WDTAGQE++  +   YY  A   ++++DVT   T++NV  W R+L      NI ++L GNK D++   V   T    +F  K++L + + SA    N +  F
Sbjct:    8 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYIATIGVEVHPLAFYTNFGEIKFDVWDTAGQEKFGGLRDGYYINAQCGIIMFDVTSRITYKNVPNWHRDL-VRVCENIPIVLCGNKVDVKERKVKAKT---ITFHRKKNLQYYDISAKSNYNFEKPF 158          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: DJC27_MOUSE (DnaJ homolog subfamily C member 27 OS=Mus musculus GN=Dnajc27 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.929e-18
Identity = 47/168 (27.98%), Postives = 85/168 (50.60%), Query Frame = 2
Query:   47 RAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDP-----NIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAF 535
            R E       KV+ +G++ VGKS ++ R+    F  +  +TIG+++    + V  + IK  I+D AG   +  + + +Y+   G +LVYDV +  +F+ ++ WL E++    P     NIV ++  NK D      +   +G+ +AE +   + ETSA     ++  F
Sbjct:    8 RKEPAKSLRIKVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFFEVRNEFYKDTQGVILVYDVGQKDSFDALDSWLAEMKQELGPHGNMDNIVFVVCANKIDCSKHRCIDESEGRLWAESKGFLYFETSAQTGEGINEMF 175          
The following BLAST results are available for this feature:
BLAST of CX295750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAN_CANFA5.235e-1834.15GTP-binding nuclear protein Ran OS=Canis familiari... [more]
RAN_BOVIN5.235e-1834.15GTP-binding nuclear protein Ran OS=Bos taurus GN=R... [more]
DJC27_DANRE5.235e-1827.43DnaJ homolog subfamily C member 27 OS=Danio rerio ... [more]
DJC27_CHICK5.235e-1828.90DnaJ homolog subfamily C member 27 OS=Gallus gallu... [more]
DJ27B_XENLA5.235e-1827.38DnaJ homolog subfamily C member 27-B OS=Xenopus la... [more]
YPT10_YEAST6.836e-1830.93GTP-binding protein YPT10 OS=Saccharomyces cerevis... [more]
RAS1_PHYPO6.836e-1833.33Ras-like protein 1 OS=Physarum polycephalum GN=RAS... [more]
RAS1_CANAL6.836e-1833.53Ras-like protein 1 OS=Candida albicans GN=RAS1 PE=... [more]
GSP1_ASHGO8.929e-1834.84GTP-binding nuclear protein GSP1/Ran OS=Ashbya gos... [more]
DJC27_MOUSE8.929e-1827.98DnaJ homolog subfamily C member 27 OS=Mus musculus... [more]

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Properties
Property NameValue
Genbank descriptionC05075E05SK DroRLeaf1 Citrus clementina cDNA clone C05075E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295750 ID=CX295750; Name=CX295750; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAGTGTGAAGATATAAAGTTGCAATAGCTATGGCTGGATACAGAG
CTGAAGATGACTATGATTATCTTTTTAAGGTGGTTTTGATCGGTGACTCC
GGTGTCGGCAAGTCCAATTTGCTTTCGAGGTTCACTAGGAACGAGTTTAG
TCTCGAGTCTAAGTCCACAATAGGTGTTGAGTTCGCTACTCGTAGCTTGA
ATGTCGATGGCAAAGTCATCAAAGCTCAGATTTGGGACACCGCCGGCCAA
GAAAGGTACCGTGCCATAACCAGTGCATACTACCGAGGAGCTGTCGGGGC
ACTTCTAGTGTATGACGTCACTCGGCATTCCACATTTGAAAATGTGGAAA
GGTGGTTAAGGGAGTTGAGGGATCACACAGATCCCAACATTGTGGTTATG
CTCATTGGTAATAAATCGGATCTCCGTCACCTGGTGGCTGTCTCAACAGA
GGACGGGAAATCATTTGCTGAGAAGGAATCTCTCTTCTTCATGGAAACTT
CTGCTCTGGAGGCTACTAATGTGGACAATGCATTTGCTGAAGTGCTGACT
CAAATCTACCGTATTGTGAGCAAGAAGGCCATGGAGACAGGTGAGGATGT
AGGAAATTCTGCTGTACCTTCCAAGGAGAGAAAATTGATGTCAGTAAAGA
TGTGTCTGCTGTGAAGAAGGTGGCTGCTGCTCACT
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