CX295750

Overview
NameCX295750
Unique NameCX295750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: DJC27_BOVIN (DnaJ homolog subfamily C member 27 OS=Bos taurus GN=DNAJC27 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.929e-18
Identity = 48/168 (28.57%), Postives = 84/168 (50.00%), Query Frame = 2
Query:   47 RAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDP-----NIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAF 535
            R E       KV+ +G++ VGKS ++ R+    F  +  +TIG+++    + V  + IK  I+D AG   +  + + +Y+   G +LVYDV +  +F+ ++ WL E++    P     NIV  +  NK D      V   +G+ +AE +   + ETSA     ++  F
Sbjct:    8 RKEPGKSLRIKVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDREIKVNIFDMAGDPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDTWLAEMKQDLGPHGNMENIVFAVCANKIDCTKHRCVDESEGRLWAESKGFLYFETSAQTGEGINEMF 175          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RASU_DICDI (Ras-like protein rasU OS=Dictyostelium discoideum GN=rasU PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 49/156 (31.41%), Postives = 88/156 (56.41%), Query Frame = 2
Query:   77 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEV 544
            ++ ++GD GVGK+++  +F  N F      TI   +  + L +D +V    I DTAGQ+   AI + + +   G +LVY VT  S+F+ ++ +L +++      + +++I NKSDL     V+ ++G++FA +  + FME SA    N+D  F ++
Sbjct:   16 RLCVMGDGGVGKTSITIQFISNHFVNCYDPTIEDLYRKQCL-IDDQVYMLDILDTAGQDELNAIRNHWIKSCEGFILVYSVTSRSSFDQIQSFLDQIKFLKSEKVPIIMIANKSDLDDERQVTYQEGENFANRFGMSFMEVSAKYKLNIDEVFNQI 170          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAP1B_CYPCA (Ras-related protein Rap-1b OS=Cyprinus carpio GN=rap1b PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 58/166 (34.94%), Postives = 92/166 (55.42%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRE--LRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEK-ESLFFMETSALEATNVDNAFAEVLTQIYR 562
            +K+V++G  GVGKS L  +F +  F  +   TI   +  + + VDG+    +I DTAG E++ A+   Y +   G  LVY +T  STF +++  LRE  LR     ++ ++L+GNK DL     V  E G++ A +  S  F+E+SA    NV+  F +++ QI R
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQD-LREQILRVKDTDDVPIILVGNKCDLEDERVVGKEQGQNLARQWNSCAFLESSAKSKINVNEIFYDLVRQINR 167          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSJ (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. japonica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 51/154 (33.12%), Postives = 82/154 (53.25%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAF 535
            FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAGQE++  +   YY     A++++DVT   T++NV  W R+L      NI ++L GNK D+++    + +   +F  K++L + E SA    N +  F
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFTTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPF 164          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAN2_ORYSI (GTP-binding nuclear protein Ran-2 OS=Oryza sativa subsp. indica GN=RAN2 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 51/154 (33.12%), Postives = 82/154 (53.25%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAF 535
            FK+V++GD G GK+  + R    EF  + + TIGVE        +   I+   WDTAGQE++  +   YY     A++++DVT   T++NV  W R+L      NI ++L GNK D+++    + +   +F  K++L + E SA    N +  F
Sbjct:   14 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFTTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTSRLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPF 164          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAC9_ARATH (Rac-like GTP-binding protein ARAC9 OS=Arabidopsis thaliana GN=ARAC9 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 60/178 (33.71%), Postives = 88/178 (49.44%), Query Frame = 2
Query:   77 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENV-ERWLRELRDHTDPNIVVMLIGNKSDLRH----------LVAVSTEDGKSF-AEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSK 574
            K V +GD  VGK+ LL  +T N F  +   T+   F    L VDGK +   +WDTAGQE Y  +    YRGA   +L + +    +FEN+ ++W+ ELR H  P + ++L+G KSDLR              +  E G+    E  +L ++E S+    NV   F E +  +    SK
Sbjct:   20 KCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFNANVL-VDGKTVNLGLWDTAGQEDYNRVRPLSYRGADVFILAFSLISRPSFENIAKKWVPELR-HYAPTVPIVLVGTKSDLRDNMQFPKNYPGACTIFPEQGQELRKEIGALAYIECSSKAQMNVKAVFDEAIKVVLHPPSK 195          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: GSP1_NEUCR (GTP-binding nuclear protein GSP1/Ran OS=Neurospora crassa GN=gsp-1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 55/172 (31.98%), Postives = 89/172 (51.74%), Query Frame = 2
Query:   74 FKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLR-HLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAME 586
            FK+VL+GD G GK+  + R    EF  +  +T+GVE      + +   I+  +WDTAGQE++  +   YY      ++++DVT   T++NV  W R+L      NI ++L GNK D++   V   T    +F  K++L + + SA    N +  F   L    ++V   A+E
Sbjct:    8 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYMATLGVEVHPLGFSTNFGQIQFDVWDTAGQEKFGGLRDGYYINGQCGIIMFDVTSRITYKNVPNWHRDL-TRVCENIPIVLCGNKVDVKERKVKAKT---ITFHRKKNLQYYDISAKSNYNFEKPF---LWLARKLVGNNALE 172          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: DJC27_RAT (DnaJ homolog subfamily C member 27 OS=Rattus norvegicus GN=Dnajc27 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.523e-17
Identity = 45/158 (28.48%), Postives = 82/158 (51.90%), Query Frame = 2
Query:   77 KVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDP-----NIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAF 535
            KV+ +G++ VGKS ++ R+    F  +  +TIG+++    + V  + IK  I+D AG   +  + + +Y+   G +LVYDV +  +F+ ++ WL E++    P     NIV ++  NK D      +   +G+ +AE     + ETSA     ++  F
Sbjct:   18 KVISMGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVQVRDREIKVNIFDMAGHPFFFEVRNEFYKDTQGVILVYDVGQKDSFDALDSWLAEMKQELGPHGNMENIVFVVCANKIDCSKHRCIDESEGRLWAESRGFLYFETSAQTGEGINEMF 175          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RASY_DICDI (Ras-like protein rasY OS=Dictyostelium discoideum GN=rasY PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.989e-17
Identity = 56/165 (33.94%), Postives = 88/165 (53.33%), Query Frame = 2
Query:   71 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTD-PNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYR 562
            L K+ ++GD GVGK+++  +F  N F      TI   +  + L +D +V    I DTAGQ+   A+   + R   G +LVY VT  S+F+ V+ +  ++    D  ++ +M+IGNKSDL     V+ ++GK  A    + FME SA    NV+  F E +  + R
Sbjct:   10 LVKLCIMGDGGVGKTSVTIQFISNHFVHYYDPTIEDSYRKQCL-IDDQVYMLDILDTAGQDELTAMRDQWIRSCEGFILVYSVTSRSSFDQVQFFREQIIRVLDRDDVPIMMIGNKSDLDDERQVTFQEGKDLARCLGMSFMEVSAKTRLNVEEVFNETVRCVKR 173          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAS2_NEUCR (Protein ras-2 OS=Neurospora crassa GN=ras-2 PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 1.989e-17
Identity = 60/208 (28.85%), Postives = 103/208 (49.52%), Query Frame = 2
Query:   71 LFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELR------------------DHTDPN--IVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSAVPSKERK 634
            L+K+V++GD GVGK+ L  +     F      TI   +  + + +DG+    ++ DTAGQE Y A+   + R   G +LVY ++  S+F  ++++  +++                    T+P+  + +ML+GNKSD      VST++G + A +    F E SA   TNV+ AF +V+ Q+     +K  + G+    +  PS   K
Sbjct:    8 LYKLVVLGDGGVGKTALTIQLCLEHFVETYDPTIEDSYR-KQVVIDGQACMLEVLDTAGQEEYTALRDQWIRDGEGFVLVYSISSRSSFARIKKFHHQIQRVKESTSSPSAYPGSSPLAATNPSAPVPIMLVGNKSDRVTEREVSTQEGHALARELGCEFTEASAKTRTNVEKAFYDVVKQL-----RKQRQQGQSTPRALPPSGNSK 209          
The following BLAST results are available for this feature:
BLAST of CX295750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DJC27_BOVIN8.929e-1828.57DnaJ homolog subfamily C member 27 OS=Bos taurus G... [more]
RASU_DICDI1.523e-1731.41Ras-like protein rasU OS=Dictyostelium discoideum ... [more]
RAP1B_CYPCA1.523e-1734.94Ras-related protein Rap-1b OS=Cyprinus carpio GN=r... [more]
RAN2_ORYSJ1.523e-1733.12GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
RAN2_ORYSI1.523e-1733.12GTP-binding nuclear protein Ran-2 OS=Oryza sativa ... [more]
RAC9_ARATH1.523e-1733.71Rac-like GTP-binding protein ARAC9 OS=Arabidopsis ... [more]
GSP1_NEUCR1.523e-1731.98GTP-binding nuclear protein GSP1/Ran OS=Neurospora... [more]
DJC27_RAT1.523e-1728.48DnaJ homolog subfamily C member 27 OS=Rattus norve... [more]
RASY_DICDI1.989e-1733.94Ras-like protein rasY OS=Dictyostelium discoideum ... [more]
RAS2_NEUCR1.989e-1728.85Protein ras-2 OS=Neurospora crassa GN=ras-2 PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionC05075E05SK DroRLeaf1 Citrus clementina cDNA clone C05075E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295750 ID=CX295750; Name=CX295750; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAGTGTGAAGATATAAAGTTGCAATAGCTATGGCTGGATACAGAG
CTGAAGATGACTATGATTATCTTTTTAAGGTGGTTTTGATCGGTGACTCC
GGTGTCGGCAAGTCCAATTTGCTTTCGAGGTTCACTAGGAACGAGTTTAG
TCTCGAGTCTAAGTCCACAATAGGTGTTGAGTTCGCTACTCGTAGCTTGA
ATGTCGATGGCAAAGTCATCAAAGCTCAGATTTGGGACACCGCCGGCCAA
GAAAGGTACCGTGCCATAACCAGTGCATACTACCGAGGAGCTGTCGGGGC
ACTTCTAGTGTATGACGTCACTCGGCATTCCACATTTGAAAATGTGGAAA
GGTGGTTAAGGGAGTTGAGGGATCACACAGATCCCAACATTGTGGTTATG
CTCATTGGTAATAAATCGGATCTCCGTCACCTGGTGGCTGTCTCAACAGA
GGACGGGAAATCATTTGCTGAGAAGGAATCTCTCTTCTTCATGGAAACTT
CTGCTCTGGAGGCTACTAATGTGGACAATGCATTTGCTGAAGTGCTGACT
CAAATCTACCGTATTGTGAGCAAGAAGGCCATGGAGACAGGTGAGGATGT
AGGAAATTCTGCTGTACCTTCCAAGGAGAGAAAATTGATGTCAGTAAAGA
TGTGTCTGCTGTGAAGAAGGTGGCTGCTGCTCACT
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