CX295750

Overview
NameCX295750
Unique NameCX295750
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1753 contig Ccv1_Contig1753:10..695. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB2A_PONAB (Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.854e-48
Identity = 97/184 (52.72%), Postives = 123/184 (66.85%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSA 613
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DGK IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R H++ N+V+MLIGNKSDL     V  E+G++FA +  L FMETSA  A+NV+ AF     +IY    +K  E   D+ N A
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY----EKIQEGVFDINNEA 182          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB2A_MOUSE (Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.854e-48
Identity = 97/184 (52.72%), Postives = 123/184 (66.85%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSA 613
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DGK IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R H++ N+V+MLIGNKSDL     V  E+G++FA +  L FMETSA  A+NV+ AF     +IY    +K  E   D+ N A
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY----EKIQEGVFDINNEA 182          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB2A_MACFA (Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.854e-48
Identity = 97/184 (52.72%), Postives = 123/184 (66.85%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSA 613
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DGK IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R H++ N+V+MLIGNKSDL     V  E+G++FA +  L FMETSA  A+NV+ AF     +IY    +K  E   D+ N A
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY----EKIQEGVFDINNEA 182          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB2A_HUMAN (Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.854e-48
Identity = 97/184 (52.72%), Postives = 123/184 (66.85%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSA 613
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DGK IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R H++ N+V+MLIGNKSDL     V  E+G++FA +  L FMETSA  A+NV+ AF     +IY    +K  E   D+ N A
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY----EKIQEGVFDINNEA 182          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB2A_CHICK (Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.854e-48
Identity = 97/184 (52.72%), Postives = 123/184 (66.85%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSA 613
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DGK IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R H++ N+V+MLIGNKSDL     V  E+G++FA +  L FMETSA  A+NV+ AF     +IY    +K  E   D+ N A
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY----EKIQEGVFDINNEA 182          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB2A_CANFA (Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.854e-48
Identity = 97/184 (52.72%), Postives = 123/184 (66.85%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSA 613
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DGK IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R H++ N+V+MLIGNKSDL     V  E+G++FA +  L FMETSA  A+NV+ AF     +IY    +K  E   D+ N A
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY----EKIQEGVFDINNEA 182          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.081e-47
Identity = 96/184 (52.17%), Postives = 123/184 (66.85%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSA 613
            Y YLFK ++IGD+GVGKS LL +FT   F      T+GVEF  R + +DGK IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R H++ N+V+MLIGNKSDL     V  E+G++FA +  L FMETSA  A+NV+ AF     +IY    +K  E   D+ N A
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTMGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIY----EKIQEGVFDINNEA 182          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.845e-47
Identity = 96/184 (52.17%), Postives = 122/184 (66.30%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSA 613
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R + +DGK IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R H++ N+V+MLIGNKSDL     V  E+G++FA +  L FMETSA  A NV+ AF     +IY    +K  +   D+ N A
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAFINTAKEIY----QKIQDGVFDINNEA 182          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB2A_MAIZE (Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.845e-47
Identity = 96/184 (52.17%), Postives = 121/184 (65.76%), Query Frame = 2
Query:   62 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAMETGEDVGNSA 613
            Y YLFK ++IGD+GVGKS LL +FT   F      TIGVEF  R +N+D K IK QIWDTAGQE +R+IT +YYRGA GALLVYD+TR  TF ++  WL + R H + N+ +ML+GNK DL H  AVS E+G+ FA++  L FME SA  A NV+ AF +    IY    KK  +   DV N +
Sbjct:    3 YAYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMINIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLVGNKCDLSHRRAVSYEEGEQFAKEHGLIFMEASAKTAQNVEEAFVKTAGAIY----KKIQDGVFDVSNES 182          
BLAST of CX295750 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 187.963 bits (476), Expect = 4.109e-47
Identity = 89/176 (50.57%), Postives = 124/176 (70.45%), Query Frame = 2
Query:   59 DYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVDGKVIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLIGNKSDLRHLVAVSTEDGKSFAEKESLFFMETSALEATNVDNAFAEVLTQIYRIVSKKAME 586
            +Y Y+FK ++IGD GVGKS LL +FT  +F  +   TIGVEF TR + V G+ IK QIWDTAGQER+RA+T +YYRGA GAL+VYD+TR ST+ ++  WL + R+ T+PN V++LIGNK+DL     V+ E+ K FAE+  L F+E SA    NV++AF E   +IY+ +   +++
Sbjct:    7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQNIQDGSLD 182          
The following BLAST results are available for this feature:
BLAST of CX295750 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2A_PONAB4.854e-4852.72Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2... [more]
RAB2A_MOUSE4.854e-4852.72Ras-related protein Rab-2A OS=Mus musculus GN=Rab2... [more]
RAB2A_MACFA4.854e-4852.72Ras-related protein Rab-2A OS=Macaca fascicularis ... [more]
RAB2A_HUMAN4.854e-4852.72Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2... [more]
RAB2A_CHICK4.854e-4852.72Ras-related protein Rab-2A OS=Gallus gallus GN=RAB... [more]
RAB2A_CANFA4.854e-4852.72Ras-related protein Rab-2A OS=Canis familiaris GN=... [more]
RAB2A_RAT1.081e-4752.17Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]
RAB2_LYMST1.845e-4752.17Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB2A_MAIZE1.845e-4752.17Ras-related protein Rab-2-A OS=Zea mays GN=RAB2A P... [more]
RAB14_RAT4.109e-4750.57Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]

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Properties
Property NameValue
Genbank descriptionC05075E05SK DroRLeaf1 Citrus clementina cDNA clone C05075E05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295750 ID=CX295750; Name=CX295750; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAGTGTGAAGATATAAAGTTGCAATAGCTATGGCTGGATACAGAG
CTGAAGATGACTATGATTATCTTTTTAAGGTGGTTTTGATCGGTGACTCC
GGTGTCGGCAAGTCCAATTTGCTTTCGAGGTTCACTAGGAACGAGTTTAG
TCTCGAGTCTAAGTCCACAATAGGTGTTGAGTTCGCTACTCGTAGCTTGA
ATGTCGATGGCAAAGTCATCAAAGCTCAGATTTGGGACACCGCCGGCCAA
GAAAGGTACCGTGCCATAACCAGTGCATACTACCGAGGAGCTGTCGGGGC
ACTTCTAGTGTATGACGTCACTCGGCATTCCACATTTGAAAATGTGGAAA
GGTGGTTAAGGGAGTTGAGGGATCACACAGATCCCAACATTGTGGTTATG
CTCATTGGTAATAAATCGGATCTCCGTCACCTGGTGGCTGTCTCAACAGA
GGACGGGAAATCATTTGCTGAGAAGGAATCTCTCTTCTTCATGGAAACTT
CTGCTCTGGAGGCTACTAATGTGGACAATGCATTTGCTGAAGTGCTGACT
CAAATCTACCGTATTGTGAGCAAGAAGGCCATGGAGACAGGTGAGGATGT
AGGAAATTCTGCTGTACCTTCCAAGGAGAGAAAATTGATGTCAGTAAAGA
TGTGTCTGCTGTGAAGAAGGTGGCTGCTGCTCACT
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