CX295756

Overview
NameCX295756
Unique NameCX295756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_ERWCT (3-ketoacyl-CoA thiolase OS=Erwinia carotovora subsp. atroseptica GN=fadA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.386e-14
Identity = 52/153 (33.99%), Postives = 76/153 (49.67%), Query Frame = 2
Query:   23 STVVVSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            S+  +SDGA+A++++S  +   LGL V A+IR  A     P      P      A+  AGL  + I  +E+NEAF+ +                LP            I +  LL    E+VN +GGA++LGHPLGCSGARI  TL+ ++  +
Sbjct:  237 SSSALSDGASAMLIMSESRAASLGLPVRARIRAMAVVGCDPSIMGYGPVPATKLALKRAGLSLADIGIFELNEAFAAQT---------------LP-----------CIKDLGLLEQLDEKVNLNGGAIALGHPLGCSGARISTTLINLMESR 363          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: THIK_YEAST (3-ketoacyl-CoA thiolase, peroxisomal OS=Saccharomyces cerevisiae GN=FOX3 PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.729e-14
Identity = 49/147 (33.33%), Postives = 69/147 (46.94%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 475
            VSDG A ++L       +L L V+ +   F      PE     P+  IPK +   GL+   ID +EINEAF+ +              +L   H                LG+D  +VN  GGA++LGHPLGC+GAR + T+L  L+
Sbjct:  276 VSDGVAGVLLARRSVANQLNLPVLGRYIDFQTVGVPPEIMGVGPAYAIPKVLEATGLQVQDIDIFEINEAFAAQ--------------ALYCIH---------------KLGIDLNKVNPRGGAIALGHPLGCTGARQVATILRELK 393          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: THLA_CLOD6 (Acetyl-CoA acetyltransferase OS=Clostridium difficile (strain 630) GN=thlA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 49/149 (32.89%), Postives = 73/149 (48.99%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            ++DGAA LV+++  K  ELG++ +A I  +  A   P+     P     KA+  A +    ID  E NEAF+                            Q VA+     L +D  +VN +GGA+++GHP+GCSGARIL TLL  ++ +
Sbjct:  249 INDGAAMLVVMAKEKAEELGIEPLATIVSYGTAGVDPKIMGYGPVPATKKALEAANMTIEDIDLVEANEAFAA---------------------------QSVAVIRD--LNIDMNKVNVNGGAIAIGHPIGCSGARILTTLLYEMKRR 368          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: THIL_MYCLE (Probable acetyl-CoA acetyltransferase OS=Mycobacterium leprae GN=fadA4 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 47/138 (34.06%), Postives = 69/138 (50.00%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARI 448
            +SDGAA +V+++  K  +LGL  + +I      A       + P+  I KA+   G+   Q+D  EINEAF+                              VA+A+ + LG+ PE VN +GGA+++GHPLG SGARI
Sbjct:  250 ISDGAATVVVMNKEKAQQLGLTWLVEIGAHGVVAGPDSTLQSQPANAIKKAVDREGISVEQLDVVEINEAFA-----------------------------AVALASARELGIAPELVNVNGGAIAVGHPLGMSGARI 358          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: THIL_CHRVI (Acetyl-CoA acetyltransferase OS=Chromatium vinosum GN=phbA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 47/143 (32.87%), Postives = 72/143 (50.35%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLL 463
            ++DGAA +V++   K  ELGL+ +A++  FA A   P    T P     K +  AG   + +D  E NEAF+ +                             A++  + +G D  +VN +GGA+++GHP+G SGAR+LVTLL
Sbjct:  251 INDGAAMVVVMKESKAKELGLKPMARLVAFASAGVDPAIMGTGPIPASTKCLEKAGWTPADLDLIEANEAFAAQ-----------------------------AMSVNQDMGWDLSKVNVNGGAIAIGHPIGASGARVLVTLL 364          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_VIBC3 (3-ketoacyl-CoA thiolase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=fadA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 50/149 (33.56%), Postives = 75/149 (50.34%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            +SDGA+A++++S  K   LGL + A+I+  A A   P      P     KA+  AGL    +D  E+NEAF+ ++               LP              +  LL +  ++VN +GGA++LGHPLGCSG RI  TL+ ++  K
Sbjct:  241 LSDGASAMLVMSEQKAKALGLTIRARIKAMAVAGCDPSIMGYGPVPATHKALKRAGLTMQDMDVVELNEAFAAQS---------------LP-----------CAKDLGLLDMMDDKVNLNGGAIALGHPLGCSGTRISTTLINLMEAK 363          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_SHEPC (3-ketoacyl-CoA thiolase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=fadA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 48/149 (32.21%), Postives = 76/149 (51.01%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            +SDGA+A++++   K   LGL + A+IR  A A          P     KA+A AG+  + +D  E+NEAF+ ++               LP            + +  L  +  +++N +GGA++LGHPLGCSGARI  TL+ ++  K
Sbjct:  241 LSDGASAMLIMEESKARALGLPIRARIRSMAVAGCDAAIMGYGPVPATQKALARAGITVADLDVIELNEAFAAQS---------------LP-----------CVKDLGLADVVDDKINLNGGAIALGHPLGCSGARISTTLINLMEDK 363          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_SHEB8 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS185) GN=fadA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 48/149 (32.21%), Postives = 76/149 (51.01%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            +SDGA+A++++   K   LGL + A+IR  A A          P     KA+A AG+  + +D  E+NEAF+ ++               LP            + +  L  +  +++N +GGA++LGHPLGCSGARI  TL+ ++  K
Sbjct:  241 LSDGASAMLIMEESKARALGLPIRARIRSMAVAGCDAAIMGYGPVPATQKALARAGITVADLDVIELNEAFAAQS---------------LP-----------CVKDLGLADVVDDKINLNGGAIALGHPLGCSGARISTTLINLMEDK 363          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_SHEB5 (3-ketoacyl-CoA thiolase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=fadA PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 48/149 (32.21%), Postives = 76/149 (51.01%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            +SDGA+A++++   K   LGL + A+IR  A A          P     KA+A AG+  + +D  E+NEAF+ ++               LP            + +  L  +  +++N +GGA++LGHPLGCSGARI  TL+ ++  K
Sbjct:  241 LSDGASAMLIMEESKARALGLPIRARIRSMAVAGCDAAIMGYGPVPATQKALARAGITVADLDVIELNEAFAAQS---------------LP-----------CVKDLGLADVVDDKINLNGGAIALGHPLGCSGARISTTLINLMEDK 363          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_VIBCH (3-ketoacyl-CoA thiolase OS=Vibrio cholerae GN=fadA PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 50/149 (33.56%), Postives = 75/149 (50.34%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            +SDGA+A++++S  K   LGL + A+I+  A A   P      P     KA+  AGL    +D  E+NEAF+ ++               LP              +  LL +  ++VN +GGA++LGHPLGCSG RI  TL+ ++  K
Sbjct:  241 LSDGASAMLVMSEQKAKALGLTIRARIKAMAVAGCDPSIMGYGPVPATHKALQRAGLTMQDMDVVELNEAFAAQS---------------LP-----------CAKDLGLLEMMDDKVNLNGGAIALGHPLGCSGTRISTTLINLMEAK 363          
The following BLAST results are available for this feature:
BLAST of CX295756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
FADA_ERWCT4.386e-1433.993-ketoacyl-CoA thiolase OS=Erwinia carotovora subs... [more]
THIK_YEAST5.729e-1433.333-ketoacyl-CoA thiolase, peroxisomal OS=Saccharomy... [more]
THLA_CLOD67.482e-1432.89Acetyl-CoA acetyltransferase OS=Clostridium diffic... [more]
THIL_MYCLE7.482e-1434.06Probable acetyl-CoA acetyltransferase OS=Mycobacte... [more]
THIL_CHRVI7.482e-1432.87Acetyl-CoA acetyltransferase OS=Chromatium vinosum... [more]
FADA_VIBC37.482e-1433.563-ketoacyl-CoA thiolase OS=Vibrio cholerae serotyp... [more]
FADA_SHEPC7.482e-1432.213-ketoacyl-CoA thiolase OS=Shewanella putrefaciens... [more]
FADA_SHEB87.482e-1432.213-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
FADA_SHEB57.482e-1432.213-ketoacyl-CoA thiolase OS=Shewanella baltica (str... [more]
FADA_VIBCH9.772e-1433.563-ketoacyl-CoA thiolase OS=Vibrio cholerae GN=fadA... [more]

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Properties
Property NameValue
Genbank descriptionC05075E11SK DroRLeaf1 Citrus clementina cDNA clone C05075E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295756 ID=CX295756; Name=CX295756; organism=Citrus clementina; type=EST; length=672bp
CTTATCAGTTTTGGGTTGTTGGTCTACTGTTGTGGTCAGTGATGGTGCAG
CAGCACTTGTACTGGTGAGTGGAGTGAAGGTGCTTGAGCTTGGTTTGCAA
GTAATAGCTAAGATTAGGGGATTTGCTGACGCAGCTCAGGCTCCAGAGTG
GTTTACAACTGCTCCATCCCTTGTAATACCAAAAGCCATAGCAAATGCTG
GCTTGGAAGCTTCTCAGATTGATTACTATGAAATAAACGAAGCTTTTTCT
GTAAGAAATCATGTTCCTACCTAGTGATGCCGCTAGTATCCAAAGGTTAG
TTTATTACCATTTCATGTTCTAACCTCCTCTTTGCAGGTTGTAGCTATTG
CCAATCAAAAACTGCTTGGTCTTGATCCTGAACAGGTTAATGCGCATGGT
GGAGCCGTATCCCTGGGTCATCCGTTAGGGTGTAGTGGAGCTCGTATCTT
GGTCACATTATTGGGGGTACTGAGACATAAGAAGGGGAAGTACGGGGTTG
GTGGCATCTGCAATGGTGGAGGGGGGGCATCCGCTCTTGTTCTTGAGCTC
ATGCAAGCGGTGCGGGTGGGACATTCCAAGCTATGAATTGATGATGTGTA
CTGACTGTGGAACATCACCTCCTGTGCTATTGTCTCTTATCTCTTTGTTA
AGTTGTCTACTTGAATGAGAAA
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