CX295756

Overview
NameCX295756
Unique NameCX295756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_BACSU (3-ketoacyl-CoA thiolase OS=Bacillus subtilis GN=fadA PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.611e-16
Identity = 50/148 (33.78%), Postives = 79/148 (53.38%), Query Frame = 2
Query:   38 SDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            SDGAAA++L+   K   LGL  + K R FA     PE     P   IP+A+  AGL+   I  +E+NEAF+                        + ++QV+     + LG+D E+VN +GGA++LGHPLGC+G ++ ++L+  ++ +
Sbjct:  249 SDGAAAVMLMDREKADALGLAPLVKFRSFAVGGVPPEVMGIGPVEAIPRALKLAGLQLQDIGLFELNEAFA------------------------SQAIQVI-----RELGIDEEKVNVNGGAIALGHPLGCTGTKLTLSLIHEMKRR 367          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_ALCBS (3-ketoacyl-CoA thiolase OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=fadA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.611e-16
Identity = 58/149 (38.93%), Postives = 77/149 (51.68%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            +SDGA+A++++S  +   LGL+  AKIR  A A          P     KA+A AGL    IDY E+NEAF+ ++               LP              + KLL    E+VN +GGA++LGHPLGCSGARI  TLL V+  K
Sbjct:  245 LSDGASAMLVMSAERAQALGLKPRAKIRSMAVAGCDAAIMGYGPVPATQKALARAGLTIDDIDYVELNEAFAAQS---------------LP-----------VAKDLKLLDKMEEKVNLNGGAIALGHPLGCSGARITGTLLNVMEWK 367          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: ATOB_ECOLI (Acetyl-CoA acetyltransferase OS=Escherichia coli (strain K12) GN=atoB PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.611e-16
Identity = 54/147 (36.73%), Postives = 75/147 (51.02%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 475
            ++DGAAALV++     L  GL  +A+I+ +A     P      P     KA+  AGL+ + ID  E NEAF+                            Q +A+   K LG D E+VN +GGA++LGHP+G SGARILVTLL  ++
Sbjct:  250 INDGAAALVIMEESAALAAGLTPLARIKSYASGGVPPALMGMGPVPATQKALQLAGLQLADIDLIEANEAFAA---------------------------QFLAVG--KNLGFDSEKVNVNGGAIALGHPIGASGARILVTLLHAMQ 367          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_PSEMY (3-ketoacyl-CoA thiolase OS=Pseudomonas mendocina (strain ymp) GN=fadA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.104e-16
Identity = 52/147 (35.37%), Postives = 77/147 (52.38%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 475
            ++DGA+ ++++S  +  +LG+Q +A +R  A A   P      P     KA+  AGL  + ID+ E+NEAF+ +                LP            + + KLL    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  245 ITDGASCMIVMSAQRAQDLGIQPMAVVRAMAVAGVDPAIMGYGPVPSTQKALKRAGLTMADIDFVELNEAFAAQ---------------ALP-----------VLKDLKLLDKMEEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_PSEFR (3-ketoacyl-CoA thiolase OS=Pseudomonas fragi GN=fadA PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 2.104e-16
Identity = 52/147 (35.37%), Postives = 77/147 (52.38%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 475
            ++DGA+ ++++S  +  +LGL+ +A IR  A A   P      P     KA+  AGL  + ID+ E+NEAF+ +                LP            + + K+L    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  245 ITDGASCMIVMSAQRAKDLGLEPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLNMADIDFIELNEAFAAQ---------------ALP-----------VLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_PSEAE (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa GN=fadA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.104e-16
Identity = 53/147 (36.05%), Postives = 77/147 (52.38%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 475
            ++DGA+ ++++S  +  +LG+Q +A IR  A A   P      P     KA+  AGL  + ID+ E+NEAF+ +                LP            + + KLL    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  245 ITDGASCMIVMSAQRAQDLGIQPMAVIRSMAVAGVDPAIMGYGPVPSTNKALKRAGLTIADIDFVELNEAFAAQ---------------ALP-----------VLKDLKLLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_PSEAB (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=fadA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.104e-16
Identity = 53/147 (36.05%), Postives = 77/147 (52.38%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 475
            ++DGA+ ++++S  +  +LG+Q +A IR  A A   P      P     KA+  AGL  + ID+ E+NEAF+ +                LP            + + KLL    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  245 ITDGASCMIVMSAQRAQDLGIQPMAVIRSMAVAGVDPAIMGYGPVPSTNKALKRAGLTIADIDFVELNEAFAAQ---------------ALP-----------VLKDLKLLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_PSEA7 (3-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa (strain PA7) GN=fadA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.104e-16
Identity = 53/147 (36.05%), Postives = 77/147 (52.38%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 475
            ++DGA+ ++++S  +  +LG+Q +A IR  A A   P      P     KA+  AGL  + ID+ E+NEAF+ +                LP            + + KLL    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  245 ITDGASCMIVMSAQRAQDLGIQPMAVIRSMAVAGVDPAIMGYGPVPSTNKALKRAGLTIADIDFVELNEAFAAQ---------------ALP-----------VLKDLKLLDKMDEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_PSE14 (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=fadA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.104e-16
Identity = 52/147 (35.37%), Postives = 77/147 (52.38%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLR 475
            ++DGA+ ++++S  +  +LG+Q +A IR  A A   P      P     KA+  AGL  + ID+ E+NEAF+ +                LP            + + K+L    E+VN HGGA++LGHP GCSGARI  TLL V++
Sbjct:  245 ITDGASCMIVMSAQRAQDLGIQPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLTIADIDFIELNEAFAAQ---------------ALP-----------VLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMK 365          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: THIC_MOUSE (Acetyl-CoA acetyltransferase, cytosolic OS=Mus musculus GN=Acat2 PE=1 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 3.588e-16
Identity = 54/146 (36.99%), Postives = 74/146 (50.68%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVL 472
            ++DGAAA+VL+   +     L+ +A+I  ++ A   P      P   I +A+A AG     +D +EINEAF+                              V+ A  K LGL+PE+VN  GGA++LGHPLG SG RILVTLL  L
Sbjct:  254 MNDGAAAVVLMKKTEAERRMLKPLARIVSWSQAGVEPSVMGVGPIPAIKQAVAKAGWSLEDVDLFEINEAFAA-----------------------------VSAAIAKELGLNPEKVNIDGGAIALGHPLGASGCRILVTLLHTL 370          
The following BLAST results are available for this feature:
BLAST of CX295756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
FADA_BACSU1.611e-1633.783-ketoacyl-CoA thiolase OS=Bacillus subtilis GN=fa... [more]
FADA_ALCBS1.611e-1638.933-ketoacyl-CoA thiolase OS=Alcanivorax borkumensis... [more]
ATOB_ECOLI1.611e-1636.73Acetyl-CoA acetyltransferase OS=Escherichia coli (... [more]
FADA_PSEMY2.104e-1635.373-ketoacyl-CoA thiolase OS=Pseudomonas mendocina (... [more]
FADA_PSEFR2.104e-1635.373-ketoacyl-CoA thiolase OS=Pseudomonas fragi GN=fa... [more]
FADA_PSEAE2.104e-1636.053-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_PSEAB2.104e-1636.053-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_PSEA72.104e-1636.053-ketoacyl-CoA thiolase OS=Pseudomonas aeruginosa ... [more]
FADA_PSE142.104e-1635.373-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
THIC_MOUSE3.588e-1636.99Acetyl-CoA acetyltransferase, cytosolic OS=Mus mus... [more]

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Properties
Property NameValue
Genbank descriptionC05075E11SK DroRLeaf1 Citrus clementina cDNA clone C05075E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295756 ID=CX295756; Name=CX295756; organism=Citrus clementina; type=EST; length=672bp
CTTATCAGTTTTGGGTTGTTGGTCTACTGTTGTGGTCAGTGATGGTGCAG
CAGCACTTGTACTGGTGAGTGGAGTGAAGGTGCTTGAGCTTGGTTTGCAA
GTAATAGCTAAGATTAGGGGATTTGCTGACGCAGCTCAGGCTCCAGAGTG
GTTTACAACTGCTCCATCCCTTGTAATACCAAAAGCCATAGCAAATGCTG
GCTTGGAAGCTTCTCAGATTGATTACTATGAAATAAACGAAGCTTTTTCT
GTAAGAAATCATGTTCCTACCTAGTGATGCCGCTAGTATCCAAAGGTTAG
TTTATTACCATTTCATGTTCTAACCTCCTCTTTGCAGGTTGTAGCTATTG
CCAATCAAAAACTGCTTGGTCTTGATCCTGAACAGGTTAATGCGCATGGT
GGAGCCGTATCCCTGGGTCATCCGTTAGGGTGTAGTGGAGCTCGTATCTT
GGTCACATTATTGGGGGTACTGAGACATAAGAAGGGGAAGTACGGGGTTG
GTGGCATCTGCAATGGTGGAGGGGGGGCATCCGCTCTTGTTCTTGAGCTC
ATGCAAGCGGTGCGGGTGGGACATTCCAAGCTATGAATTGATGATGTGTA
CTGACTGTGGAACATCACCTCCTGTGCTATTGTCTCTTATCTCTTTGTTA
AGTTGTCTACTTGAATGAGAAA
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