CX295756

Overview
NameCX295756
Unique NameCX295756
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_VIBPA (3-ketoacyl-CoA thiolase OS=Vibrio parahaemolyticus GN=fadA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.588e-16
Identity = 54/149 (36.24%), Postives = 79/149 (53.02%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            +SDGA+A++++S  K  ELGL++ A+I+G A A   P      P     KA+  AGL    +D  E+NEAF+ ++               LP              +  LL +  E+VN +GGA++LGHPLGCSGARI  TL+ ++  K
Sbjct:  245 LSDGASAMLIMSEEKANELGLKIRARIKGMAIAGCDPSIMGYGPVPATQKALKRAGLAIEDMDVVELNEAFAAQS---------------LP-----------CAKDLGLLEVMDEKVNLNGGAIALGHPLGCSGARISTTLINLMEAK 367          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_SHISS (3-ketoacyl-CoA thiolase OS=Shigella sonnei (strain Ss046) GN=fadA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.588e-16
Identity = 54/149 (36.24%), Postives = 78/149 (52.35%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            +SDGAAA++++S  +  ELGL+  A++R  A     P      P      A+  AGL AS I  +E+NEAF+ +               +LP            I +  L+    E++N +GGA++LGHPLGCSGARI  TLL ++ HK
Sbjct:  241 LSDGAAAMLVMSESRARELGLKPRARVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQ---------------ILP-----------CIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMEHK 363          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_ENTCL (3-ketoacyl-CoA thiolase OS=Enterobacter cloacae GN=fadA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.588e-16
Identity = 54/149 (36.24%), Postives = 78/149 (52.35%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            +SDGAAA++++S  +  ELGL   A++R  A     P      P      A+  AGL AS ID +E+NEAF+ +               +LP            I +  L+G   E++N +GGA++LGHPLGCSGARI  TL+ ++  K
Sbjct:  241 LSDGAAAMLVMSESRARELGLTPRARVRSMAVVGCDPSIMGYGPVPASKLALKKAGLTASDIDLFEMNEAFAAQ---------------ILP-----------CIKDLGLMGQIDEKINLNGGAIALGHPLGCSGARISTTLINLMEGK 363          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_ECOUT (3-ketoacyl-CoA thiolase OS=Escherichia coli (strain UTI89 / UPEC) GN=fadA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.588e-16
Identity = 54/149 (36.24%), Postives = 78/149 (52.35%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            +SDGAAA++++S  +  ELGL+  A++R  A     P      P      A+  AGL AS I  +E+NEAF+ +               +LP            I +  L+    E++N +GGA++LGHPLGCSGARI  TLL ++ HK
Sbjct:  241 LSDGAAAMLVMSESRARELGLKPRARVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQ---------------ILP-----------CIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMEHK 363          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_ECOK1 (3-ketoacyl-CoA thiolase OS=Escherichia coli O1:K1 / APEC GN=fadA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.588e-16
Identity = 54/149 (36.24%), Postives = 78/149 (52.35%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            +SDGAAA++++S  +  ELGL+  A++R  A     P      P      A+  AGL AS I  +E+NEAF+ +               +LP            I +  L+    E++N +GGA++LGHPLGCSGARI  TLL ++ HK
Sbjct:  241 LSDGAAAMLVMSESRARELGLKPRARVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQ---------------ILP-----------CIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMEHK 363          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_IDILO (3-ketoacyl-CoA thiolase OS=Idiomarina loihiensis GN=fadA PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.686e-16
Identity = 55/149 (36.91%), Postives = 74/149 (49.66%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            +SDGAAA++++S  K  ELGL    KIR  A A   P      P     KA+  AG+    ID  E+NEAF+ ++               LP            +   KL     E+VN +GGA++LGHPLGCSGARI  TL+ ++  K
Sbjct:  241 LSDGAAAMLVMSADKAKELGLTPRVKIRSMAVAGCDPSIMGYGPVPATEKALKRAGVSIDDIDVVELNEAFAAQS---------------LP-----------VLKGLKLFDKMEEKVNLNGGAIALGHPLGCSGARISTTLINLMEEK 363          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: THIC_HUMAN (Acetyl-CoA acetyltransferase, cytosolic OS=Homo sapiens GN=ACAT2 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.121e-16
Identity = 53/146 (36.30%), Postives = 73/146 (50.00%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVL 472
            ++DGAAA+VL+   +  + GL  +A+I  ++     P      P   I +A+  AG     +D +EINEAF+                              V+ A  K LGL+PE+VN  GGA++LGHPLG SG RILVTLL  L
Sbjct:  254 INDGAAAVVLMKKSEADKRGLTPLARIVSWSQVGVEPSIMGIGPIPAIKQAVTKAGWSLEDVDIFEINEAFAA-----------------------------VSAAIVKELGLNPEKVNIEGGAIALGHPLGASGCRILVTLLHTL 370          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_VIBFM (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain MJ11) GN=fadA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.121e-16
Identity = 53/147 (36.05%), Postives = 78/147 (53.06%), Query Frame = 2
Query:   23 STVVVSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLL 463
            S+  +SDGA+A++++S  K  ELGL + AK+R  A +   P      P     KA+  AGL    I+ +E+NEAF+ ++               LP            I +  LL +  E+VN +GGA++LGHPLGCSG+RI  TL+
Sbjct:  237 SSSALSDGASAMLVMSEEKANELGLPIRAKVRSMAVSGCDPSIMGYGPVPATKKALKRAGLSLDDIELFELNEAFAAQS---------------LP-----------CIKDLGLLDVMDEKVNLNGGAIALGHPLGCSGSRIATTLI 357          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_VIBF1 (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadA PE=3 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.121e-16
Identity = 53/147 (36.05%), Postives = 78/147 (53.06%), Query Frame = 2
Query:   23 STVVVSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLL 463
            S+  +SDGA+A++++S  K  ELGL + AK+R  A +   P      P     KA+  AGL    I+ +E+NEAF+ ++               LP            I +  LL +  E+VN +GGA++LGHPLGCSG+RI  TL+
Sbjct:  237 SSSALSDGASAMLVMSEEKANELGLPIRAKVRSMAVSGCDPSIMGYGPVPATKKALKRAGLSLDDIELFELNEAFAAQS---------------LP-----------CIKDLGLLDVMDEKVNLNGGAIALGHPLGCSGSRIATTLI 357          
BLAST of CX295756 vs. ExPASy Swiss-Prot
Match: FADA_SALTY (3-ketoacyl-CoA thiolase OS=Salmonella typhimurium GN=fadA PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.121e-16
Identity = 54/149 (36.24%), Postives = 78/149 (52.35%), Query Frame = 2
Query:   35 VSDGAAALVLVSGVKVLELGLQVIAKIRGFADAAQAPEWFTTAPSLVIPKAIANAGLEASQIDYYEINEAFSVRNHVPT**CR*YPKVSLLPFHVLTSSLQVVAIANQKLLGLDPEQVNAHGGAVSLGHPLGCSGARILVTLLGVLRHK 481
            +SDGAAA++++S  +  ELGL+  A+IR  A     P      P      A+  AGL AS ID +E+NEAF+ +               +LP            I +  L+    E++N +GGA++LGHPLGCSGARI  TL+ ++  K
Sbjct:  241 LSDGAAAMLVMSESRARELGLKPRARIRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIDVFEMNEAFAAQ---------------ILP-----------CIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMERK 363          
The following BLAST results are available for this feature:
BLAST of CX295756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
FADA_VIBPA3.588e-1636.243-ketoacyl-CoA thiolase OS=Vibrio parahaemolyticus... [more]
FADA_SHISS3.588e-1636.243-ketoacyl-CoA thiolase OS=Shigella sonnei (strain... [more]
FADA_ENTCL3.588e-1636.243-ketoacyl-CoA thiolase OS=Enterobacter cloacae GN... [more]
FADA_ECOUT3.588e-1636.243-ketoacyl-CoA thiolase OS=Escherichia coli (strai... [more]
FADA_ECOK13.588e-1636.243-ketoacyl-CoA thiolase OS=Escherichia coli O1:K1 ... [more]
FADA_IDILO4.686e-1636.913-ketoacyl-CoA thiolase OS=Idiomarina loihiensis G... [more]
THIC_HUMAN6.121e-1636.30Acetyl-CoA acetyltransferase, cytosolic OS=Homo sa... [more]
FADA_VIBFM6.121e-1636.053-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADA_VIBF16.121e-1636.053-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADA_SALTY6.121e-1636.243-ketoacyl-CoA thiolase OS=Salmonella typhimurium ... [more]

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Properties
Property NameValue
Genbank descriptionC05075E11SK DroRLeaf1 Citrus clementina cDNA clone C05075E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295756 ID=CX295756; Name=CX295756; organism=Citrus clementina; type=EST; length=672bp
CTTATCAGTTTTGGGTTGTTGGTCTACTGTTGTGGTCAGTGATGGTGCAG
CAGCACTTGTACTGGTGAGTGGAGTGAAGGTGCTTGAGCTTGGTTTGCAA
GTAATAGCTAAGATTAGGGGATTTGCTGACGCAGCTCAGGCTCCAGAGTG
GTTTACAACTGCTCCATCCCTTGTAATACCAAAAGCCATAGCAAATGCTG
GCTTGGAAGCTTCTCAGATTGATTACTATGAAATAAACGAAGCTTTTTCT
GTAAGAAATCATGTTCCTACCTAGTGATGCCGCTAGTATCCAAAGGTTAG
TTTATTACCATTTCATGTTCTAACCTCCTCTTTGCAGGTTGTAGCTATTG
CCAATCAAAAACTGCTTGGTCTTGATCCTGAACAGGTTAATGCGCATGGT
GGAGCCGTATCCCTGGGTCATCCGTTAGGGTGTAGTGGAGCTCGTATCTT
GGTCACATTATTGGGGGTACTGAGACATAAGAAGGGGAAGTACGGGGTTG
GTGGCATCTGCAATGGTGGAGGGGGGGCATCCGCTCTTGTTCTTGAGCTC
ATGCAAGCGGTGCGGGTGGGACATTCCAAGCTATGAATTGATGATGTGTA
CTGACTGTGGAACATCACCTCCTGTGCTATTGTCTCTTATCTCTTTGTTA
AGTTGTCTACTTGAATGAGAAA
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