CX295767

Overview
NameCX295767
Unique NameCX295767
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length692
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1037 contig Ccv1_Contig1037:25..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.535e-49
Identity = 90/145 (62.07%), Postives = 113/145 (77.93%), Query Frame = 2
Query:   59 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 493
            ++KRI KEL ++  DPP +CSAGP  D+++ W++TI+GP  S + GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y T+RA+++  AR WT++YA
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.535e-49
Identity = 90/145 (62.07%), Postives = 113/145 (77.93%), Query Frame = 2
Query:   59 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 493
            ++KRI KEL ++  DPP +CSAGP  D+++ W++TI+GP  S + GGVF + I F  DYPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y T+RA+++  AR WT++YA
Sbjct:   62 SAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLTNRAEHDRIARQWTKRYA 206          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UBCD2_DROME (Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophila melanogaster GN=UbcD2 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.005e-49
Identity = 89/145 (61.38%), Postives = 112/145 (77.24%), Query Frame = 2
Query:   59 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 493
            ++KRI KEL ++  DPP +CSAGP  D+++ W +TI+GP  S + GGVF + IHF P+YPFKPPKV FRT+++H NINS G ICLDILK+ WSPALTISKVLLSICSLLTD NP DPLV  IA  Y  +R +++  AR WT++YA
Sbjct:   87 SAKRIQKELAEITLDPPPNCSAGPKGDNLYEWVSTILGPPGSVYEGGVFFLDIHFSPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYLQNREEHDRIARLWTKRYA 231          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: COP10_ARATH (Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana GN=COP10 PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 9.021e-42
Identity = 71/145 (48.97%), Postives = 106/145 (73.10%), Query Frame = 2
Query:   59 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 493
            + KRI +E+ +L  DPP  CSAGP  D+++HW ATI+GPS +P+ GG+F + I FP DYPFKPPK+ F+T+++H N+++ G + ++IL++ WSPALTI+KVL +I S+   P P  P +P IA +Y TDR K++  A+ WT ++A
Sbjct:   37 SGKRIQREMAELNIDPPPDCSAGPKGDNLYHWIATIIGPSGTPYEGGIFFLDIIFPSDYPFKPPKLVFKTRIYHCNVDTAGDLSVNILRDSWSPALTITKVLQAIRSIFLKPEPYSPALPVIARLYLTDREKHDEVAKEWTLRFA 181          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UBCB_DICDI (Ubiquitin conjugating enzyme E2 B OS=Dictyostelium discoideum GN=ubcB PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.148e-39
Identity = 77/146 (52.74%), Postives = 100/146 (68.49%), Query Frame = 2
Query:   59 ASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNIN-SNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 493
            A KR+ KE+ D+ K PP+ CSA  V D++  W+AT+ GP  SPF  GVF + I  P DYPFKPP + F TK++HPNI  S+G+IC ++    WSP L I  VL +I S+LTDPNPD+PL  EIA  +KTDR  +  TA+ WT+KYA
Sbjct:    3 AHKRLQKEITDMLKTPPSWCSAHLVDDNLQKWKATVQGPEGSPFEKGVFSMDIDIPADYPFKPPTLKFTTKIYHPNIKTSDGAICAEVFST-WSPQLKILDVLTTIRSILTDPNPDNPLETEIAQQFKTDRNAFNKTAKEWTKKYA 147          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UBC31_ARATH (Probable ubiquitin carrier protein E2 31 OS=Arabidopsis thaliana GN=UBC31 PE=2 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 8.738e-37
Identity = 66/125 (52.80%), Postives = 93/125 (74.40%), Query Frame = 2
Query:  119 SAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 493
            S G  +++++ W A I GP  +P+ GG+F +SI FP DYPFKPPK  F+T ++HPNIN  GSIC++ILK++W+PAL + KVLLSI  LL  PNPDDPLVPEI  ++K +R +++  AR +T ++A
Sbjct:   28 SIGQNSNNIYEWTAVIRGPDGTPYEGGMFNLSIKFPTDYPFKPPKFTFKTPIYHPNINDEGSICMNILKDKWTPALMVEKVLLSILLLLEKPNPDDPLVPEIGQLFKNNRFQFDQRAREFTARHA 152          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UBC35_ARATH (Ubiquitin carrier protein E2 35 OS=Arabidopsis thaliana GN=UBC35 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.648e-35
Identity = 72/145 (49.66%), Postives = 97/145 (66.90%), Query Frame = 2
Query:   65 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAMG 499
            +RI KE + L  +P    SA P  D+M ++   I+GP+ SP+ GGVF + +  P +YP   PKV F TK++HPNI+  G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL   IA  +K++ A+   TA+ WT+ YA G
Sbjct:    8 RRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFLPEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLSENIAKHWKSNEAEAVDTAKEWTRLYASG 152          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.152e-35
Identity = 69/144 (47.92%), Postives = 98/144 (68.06%), Query Frame = 2
Query:   65 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 496
            +RI KE + L ++P    +A P  ++  ++   + GP+DSPF GGVF + +  P DYP   PKV F TK++HPNI+  G ICLD+LK++WSPAL I  +LLSI +LL+ PNPDDPL  ++A ++K + A+    AR WTQKYA+
Sbjct:    6 RRIIKETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPLANDVAELWKVNEAEAIRNAREWTQKYAV 149          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UBC14_SCHPO (Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccharomyces pombe GN=ubc14 PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 2.811e-35
Identity = 67/149 (44.97%), Postives = 98/149 (65.77%), Query Frame = 2
Query:   50 SQMASKRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQ-WSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYA 493
            S  +S+R+ KE  DL++ P        V D++FHW  T +GPSDS +AGG F  S+ FP DYPF+PP + F T+++HPN +S G++CL ILK+Q + P++ +  VL  I  LL +PNPDDPLV  IA  Y+ DR  ++  AR + +++A
Sbjct:    5 SPSSSRRLTKEYSDLREHPIPDIRVNLVDDNLFHWACTALGPSDSVYAGGKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGNVCLAILKQQVFKPSIKLRSVLEQILQLLREPNPDDPLVASIAEQYRNDRPSFDKIARDYVEQFA 153          
BLAST of CX295767 vs. ExPASy Swiss-Prot
Match: UBE2N_MACFA (Ubiquitin-conjugating enzyme E2 N OS=Macaca fascicularis GN=UBE2N PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.671e-35
Identity = 70/144 (48.61%), Postives = 95/144 (65.97%), Query Frame = 2
Query:   65 KRINKELKDLQKDPPASCSAGPVADDMFHWQATIMGPSDSPFAGGVFLVSIHFPPDYPFKPPKVAFRTKVFHPNINSNGSICLDILKEQWSPALTISKVLLSICSLLTDPNPDDPLVPEIAHMYKTDRAKYETTARSWTQKYAM 496
            +RI KE + L  +P     A P   +  ++   I GP DSPF GG F + +  P +YP   PKV F TK++HPN++ +G ICLDILK++WSPAL I  VLLSI +LL+ PNPDDPL  ++A  +KT+ A+   TAR+WT+ YAM
Sbjct:    6 RRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNVDKSGRICLDILKDKWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAM 149          
The following BLAST results are available for this feature:
BLAST of CX295767 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 267
Match NameE-valueIdentityDescription
UB2E3_HUMAN1.535e-4962.07Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN1.535e-4962.07Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
UBCD2_DROME2.005e-4961.38Ubiquitin-conjugating enzyme E2-24 kDa OS=Drosophi... [more]
COP10_ARATH9.021e-4248.97Constitutive photomorphogenesis protein 10 OS=Arab... [more]
UBCB_DICDI7.148e-3952.74Ubiquitin conjugating enzyme E2 B OS=Dictyostelium... [more]
UBC31_ARATH8.738e-3752.80Probable ubiquitin carrier protein E2 31 OS=Arabid... [more]
UBC35_ARATH1.648e-3549.66Ubiquitin carrier protein E2 35 OS=Arabidopsis tha... [more]
UBE2N_DROME2.152e-3547.92Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UBC14_SCHPO2.811e-3544.97Ubiquitin-conjugating enzyme E2 14 OS=Schizosaccha... [more]
UBE2N_MACFA3.671e-3548.61Ubiquitin-conjugating enzyme E2 N OS=Macaca fascic... [more]

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Properties
Property NameValue
Genbank descriptionC05075F10SK DroRLeaf1 Citrus clementina cDNA clone C05075F10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295767 ID=CX295767; Name=CX295767; organism=Citrus clementina; type=EST; length=692bp
GAGGATACACCAGACCCAAACTCTCAGGCCACAAAGTTTGTTGAGAAATT
CCCAGATGGCTTCAAAACGGATCAACAAGGAGTTGAAGGACCTACAGAAG
GACCCTCCTGCTTCTTGTAGCGCTGGCCCTGTTGCTGATGACATGTTCCA
TTGGCAAGCAACAATTATGGGCCCATCAGACAGCCCATTTGCTGGGGGTG
TATTTCTTGTATCCATTCATTTCCCACCTGATTATCCATTCAAGCCACCG
AAGGTGGCCTTCCGTACTAAGGTTTTCCACCCTAACATCAACAGCAATGG
TAGCATCTGTCTTGACATTCTCAAGGAGCAGTGGAGCCCTGCTTTGACAA
TATCCAAGGTACTTCTGTCAATTTGCTCACTACTTACTGATCCGAACCCA
GATGACCCACTTGTGCCTGAGATTGCTCACATGTACAAGACTGACAGAGC
CAAATATGAGACTACTGCTCGATCCTGGACCCAGAAGTATGCCATGGGTT
AAGAGGGGCTAGGCTGTACGCCCCTGAGAACATTAATGGCTTGTGGTCCT
ATTAGTAAATAATAGAAATAAGTTTGTTTCAGATATTAAAAGACGATATT
TGGTTTTGTTTACTAAGTTGTTAAAAGGTTTTATGTGGGGTTACTTTCCA
ATTTAGCATTGTCCTTCAATACTTAAATTATAATTTACTGCA
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