CX295772

Overview
NameCX295772
Unique NameCX295772
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_NOVAD (50S ribosomal protein L19 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rplS PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 41/99 (41.41%), Postives = 53/99 (53.54%), Query Frame = 3
Query:  387 LNKRAIEASESERPIPDIRTGDVVEIKLEVPENRR-RLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 680
            L   AI   ++++ IPD R GD V + + V E  R R+  Y+G+ ++R N                 VE VFPLYSPNI  I VV    VRRA+LYYLR
Sbjct:    7 LEAEAIAEFKAKKEIPDFRAGDTVRVGVRVVEGERTRVQAYEGVCIARSNRGLGSNFTVRKISFGEGVERVFPLYSPNIDSITVVRRGVVRRAKLYYLR 105          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_ZYMMO (50S ribosomal protein L19 OS=Zymomonas mobilis GN=rplS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 3
Query:  372 DIMGILNKRAIEASESERPIPDIRTGDVVEIKLEVPENRR-RLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 680
            +++  L    I   + ++ IPD R GD +++ + V E  R R+  Y+G+ ++R N                 VE VFPLYSPN+  I+VV    VRRA+LYYLR
Sbjct:    2 NLIQTLEAEQIAKLQEQKSIPDFRAGDTLKVGVRVVEGERIRIQFYEGVCIARSNKAIGSSFTVRKISFGEGVERVFPLYSPNVDSIEVVRRGVVRRAKLYYLR 105          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_BEII9 (50S ribosomal protein L19 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12
Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 3
Query:  417 SERPIPDIRTGDVVEIKLEVPENRR-RLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            ++RPIP  + GD V + ++V E  R R+  Y+G+ ++R                   VE VFP+YSPNI  IKVV   KVRRA+LYYLR+
Sbjct:   17 AKRPIPAFQPGDTVIVNVKVKEGERTRVQAYEGVCIARNGGGLNESFTVRKISYGEGVERVFPIYSPNIDSIKVVRRGKVRRAKLYYLRD 106          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_RHORT (50S ribosomal protein L19 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rplS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 38/104 (36.54%), Postives = 58/104 (55.77%), Query Frame = 3
Query:  372 DIMGILNKRAIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 680
            +I+    K  IE    +R +P    GD + + ++V E NR+R+ +Y+G+ ++R+N                 VE +FPLY+P I  I+VV   KVRRA+LYYLR
Sbjct:    2 NIIEQFEKEQIEKLLEQRGVPQFSPGDTLRVHVKVIEGNRQRVQVYEGVCIARRNAALNSSFTVRKISFGEGVERIFPLYAPTIDRIEVVRRGKVRRAKLYYLR 105          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_CORU7 (50S ribosomal protein L19 OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=rplS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 38/103 (36.89%), Postives = 63/103 (61.17%), Query Frame = 3
Query:  378 MGILNKRAIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            M IL+K  ++A++    IP+ R GD V++ L+V E ++ R+ +++G+V+ RQ                  VE   P++SPNI +++V+S  KVRRA+LYYLR+
Sbjct:    1 MHILDK--VDAAQLRDDIPEFRAGDTVDVHLKVIEGSKSRVQVFRGVVIKRQGSGIRETFTVRKVSFGIGVERTIPVHSPNIDKLEVLSRGKVRRAKLYYLRD 101          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_THEFY (50S ribosomal protein L19 OS=Thermobifida fusca (strain YX) GN=rplS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 36/94 (38.30%), Postives = 55/94 (58.51%), Query Frame = 3
Query:  402 IEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 680
            +E ++    +PD R GD + + + V E NR R+ ++KG+V+ RQ                  VE  FP++SP I++I+VVS  +VRRA+LYYLR
Sbjct:    8 LEKAQLRSDVPDFRPGDTLNVHVRVTEGNRTRIQVFKGVVIRRQGSGIRETFTVRKISYAVGVERTFPVHSPVIEKIEVVSRGRVRRAKLYYLR 101          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_CALS8 (50S ribosomal protein L19 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplS PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 37/97 (38.14%), Postives = 55/97 (56.70%), Query Frame = 3
Query:  396 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            R IE+    + IPD + GD V +  +V E  R R+  ++G+V+ R+                  VE VFPL+SP I++I+V+   KVRRA+LYY+RE
Sbjct:    5 REIESEMLRKDIPDFKPGDTVRVHFKVIEGGRERIQAFEGLVIKRRGKGLSETFTVRRISYGVGVERVFPLHSPRIEKIEVIRRGKVRRAKLYYIRE 101          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_GLUDA (50S ribosomal protein L19 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rplS PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11
Identity = 37/87 (42.53%), Postives = 49/87 (56.32%), Query Frame = 3
Query:  423 RPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 680
            R +P+   GD V + + V E  R+R+  Y+G+V++R N                 VE VFPLY+P I EIKVV    VRRA+LYYLR
Sbjct:   19 REVPEFGPGDTVRVSVRVVEGERKRIQAYEGVVIARSNKGLNSNFTVRKISNGEGVERVFPLYAPTIAEIKVVRRGAVRRAKLYYLR 105          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_NOSP7 (50S ribosomal protein L19 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 37/97 (38.14%), Postives = 58/97 (59.79%), Query Frame = 3
Query:  396 RAIEASESERPIPDIRTGDVVEIKLEVPENRR-RLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            R+IEA + +  +PDI  GD V++ +++ E  + R+  Y+G+V++++N                 VE VF L+SP I  IKV+   KVRRA+LYYLR+
Sbjct:    8 RSIEAEQLKSNLPDIYVGDTVKVGVKIKEGEKYRVQPYEGVVIAKRNGGINETITVRKVFQGVGVERVFLLHSPRIDSIKVLRRGKVRRAKLYYLRD 104          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_GEOSF (50S ribosomal protein L19 OS=Geobacter sp. (strain FRC-32) GN=rplS PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11
Identity = 35/96 (36.46%), Postives = 59/96 (61.46%), Query Frame = 3
Query:  399 AIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            AIE  + ++ IP  R GD V++++++ E ++ R+  ++G+V+ RQN                 VE  FPL+SP+I  I+V++  +VRRA+LYYLR+
Sbjct:    6 AIEMEQMKKNIPGFRPGDTVKVQVKIVEGDKSRIQAFQGVVIGRQNGGIRESFTVRKISNGVGVERSFPLHSPSIDAIEVITRGQVRRAKLYYLRK 101          
The following BLAST results are available for this feature:
BLAST of CX295772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RL19_NOVAD3.486e-1241.4150S ribosomal protein L19 OS=Novosphingobium aroma... [more]
RL19_ZYMMO5.947e-1236.5450S ribosomal protein L19 OS=Zymomonas mobilis GN=... [more]
RL19_BEII95.947e-1242.2250S ribosomal protein L19 OS=Beijerinckia indica s... [more]
RL19_RHORT7.767e-1236.5450S ribosomal protein L19 OS=Rhodospirillum rubrum... [more]
RL19_CORU77.767e-1236.8950S ribosomal protein L19 OS=Corynebacterium ureal... [more]
RL19_THEFY1.014e-1138.3050S ribosomal protein L19 OS=Thermobifida fusca (s... [more]
RL19_CALS81.730e-1138.1450S ribosomal protein L19 OS=Caldicellulosiruptor ... [more]
RL19_GLUDA2.260e-1142.5350S ribosomal protein L19 OS=Gluconacetobacter dia... [more]
RL19_NOSP72.951e-1138.1450S ribosomal protein L19 OS=Nostoc punctiforme (s... [more]
RL19_GEOSF2.951e-1136.4650S ribosomal protein L19 OS=Geobacter sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionC05075G03SK DroRLeaf1 Citrus clementina cDNA clone C05075G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295772 ID=CX295772; Name=CX295772; organism=Citrus clementina; type=EST; length=707bp
GAGGGGGCTCCCAGGTTCTTCCTCAGGCTCTGCATTGGATCCCAAGAAGT
TCCACTCAGTGCATTCCTTCAAAGAGGCTAGGGTTTTCAACAGTTCTTTC
TCGCGGCCCCTTTGTGAGCCATGGGGTTTCAGTTTCAACGAAGCCTATAG
GGTGGAATTTGGGCTTTTTCGTAAATGCCCAAGTGAAAGATAGTTTTGTG
GTTAGGGCGGAGTCAAACGAAGAAGCGGAAGCGAATGAGAGTATTGAAGA
GGAGCAAAACGAGGCCGTTCAAGCACAAGGTGATGTTGTGGTAGCTGTAG
AAGCTGAATCTGAGGATAAGGTTGAAGAAGAAGAAGTGAAAGCACCCAGA
AAGCCCAGGGTTAAACTTGGAGATATCATGGGGATATTGAATAAGAGGGC
GATTGAGGCATCGGAGAGTGAAAGACCAATTCCAGATATTAGGACGGGTG
ATGTTGTGGAGATTAAATTGGAAGTTCCTGAAAATAGGCGTAGGTTGTCC
ATTTACAAAGGTATTGTTATGTCAAGGCAAAATGCTGGGATCCACACTAC
AATTCGAATTCGGAGGATTATTGCTGGCATAGGGGTTGAGATCGTATTCC
CTCTTTATTCGCCAAACATCAAGGAGATAAAAGTTGTCTCCCACAGGAAA
GTGAGGAGGGCAAGGCTGTACTATCTTAGAGAAAGCTTCCTAGACTCTCA
CTTTCAA
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