CX295772
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_NOVAD (50S ribosomal protein L19 OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=rplS PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12 Identity = 41/99 (41.41%), Postives = 53/99 (53.54%), Query Frame = 3 Query: 387 LNKRAIEASESERPIPDIRTGDVVEIKLEVPENRR-RLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 680 L AI ++++ IPD R GD V + + V E R R+ Y+G+ ++R N VE VFPLYSPNI I VV VRRA+LYYLR Sbjct: 7 LEAEAIAEFKAKKEIPDFRAGDTVRVGVRVVEGERTRVQAYEGVCIARSNRGLGSNFTVRKISFGEGVERVFPLYSPNIDSITVVRRGVVRRAKLYYLR 105
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_ZYMMO (50S ribosomal protein L19 OS=Zymomonas mobilis GN=rplS PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12 Identity = 38/104 (36.54%), Postives = 56/104 (53.85%), Query Frame = 3 Query: 372 DIMGILNKRAIEASESERPIPDIRTGDVVEIKLEVPENRR-RLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 680 +++ L I + ++ IPD R GD +++ + V E R R+ Y+G+ ++R N VE VFPLYSPN+ I+VV VRRA+LYYLR Sbjct: 2 NLIQTLEAEQIAKLQEQKSIPDFRAGDTLKVGVRVVEGERIRIQFYEGVCIARSNKAIGSSFTVRKISFGEGVERVFPLYSPNVDSIEVVRRGVVRRAKLYYLR 105
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_BEII9 (50S ribosomal protein L19 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplS PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 5.947e-12 Identity = 38/90 (42.22%), Postives = 52/90 (57.78%), Query Frame = 3 Query: 417 SERPIPDIRTGDVVEIKLEVPENRR-RLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683 ++RPIP + GD V + ++V E R R+ Y+G+ ++R VE VFP+YSPNI IKVV KVRRA+LYYLR+ Sbjct: 17 AKRPIPAFQPGDTVIVNVKVKEGERTRVQAYEGVCIARNGGGLNESFTVRKISYGEGVERVFPIYSPNIDSIKVVRRGKVRRAKLYYLRD 106
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_RHORT (50S ribosomal protein L19 OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=rplS PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12 Identity = 38/104 (36.54%), Postives = 58/104 (55.77%), Query Frame = 3 Query: 372 DIMGILNKRAIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 680 +I+ K IE +R +P GD + + ++V E NR+R+ +Y+G+ ++R+N VE +FPLY+P I I+VV KVRRA+LYYLR Sbjct: 2 NIIEQFEKEQIEKLLEQRGVPQFSPGDTLRVHVKVIEGNRQRVQVYEGVCIARRNAALNSSFTVRKISFGEGVERIFPLYAPTIDRIEVVRRGKVRRAKLYYLR 105
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_CORU7 (50S ribosomal protein L19 OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=rplS PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.767e-12 Identity = 38/103 (36.89%), Postives = 63/103 (61.17%), Query Frame = 3 Query: 378 MGILNKRAIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683 M IL+K ++A++ IP+ R GD V++ L+V E ++ R+ +++G+V+ RQ VE P++SPNI +++V+S KVRRA+LYYLR+ Sbjct: 1 MHILDK--VDAAQLRDDIPEFRAGDTVDVHLKVIEGSKSRVQVFRGVVIKRQGSGIRETFTVRKVSFGIGVERTIPVHSPNIDKLEVLSRGKVRRAKLYYLRD 101
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_THEFY (50S ribosomal protein L19 OS=Thermobifida fusca (strain YX) GN=rplS PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11 Identity = 36/94 (38.30%), Postives = 55/94 (58.51%), Query Frame = 3 Query: 402 IEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 680 +E ++ +PD R GD + + + V E NR R+ ++KG+V+ RQ VE FP++SP I++I+VVS +VRRA+LYYLR Sbjct: 8 LEKAQLRSDVPDFRPGDTLNVHVRVTEGNRTRIQVFKGVVIRRQGSGIRETFTVRKISYAVGVERTFPVHSPVIEKIEVVSRGRVRRAKLYYLR 101
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_CALS8 (50S ribosomal protein L19 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplS PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11 Identity = 37/97 (38.14%), Postives = 55/97 (56.70%), Query Frame = 3 Query: 396 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683 R IE+ + IPD + GD V + +V E R R+ ++G+V+ R+ VE VFPL+SP I++I+V+ KVRRA+LYY+RE Sbjct: 5 REIESEMLRKDIPDFKPGDTVRVHFKVIEGGRERIQAFEGLVIKRRGKGLSETFTVRRISYGVGVERVFPLHSPRIEKIEVIRRGKVRRAKLYYIRE 101
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_GLUDA (50S ribosomal protein L19 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rplS PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 2.260e-11 Identity = 37/87 (42.53%), Postives = 49/87 (56.32%), Query Frame = 3 Query: 423 RPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 680 R +P+ GD V + + V E R+R+ Y+G+V++R N VE VFPLY+P I EIKVV VRRA+LYYLR Sbjct: 19 REVPEFGPGDTVRVSVRVVEGERKRIQAYEGVVIARSNKGLNSNFTVRKISNGEGVERVFPLYAPTIAEIKVVRRGAVRRAKLYYLR 105
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_NOSP7 (50S ribosomal protein L19 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=rplS PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11 Identity = 37/97 (38.14%), Postives = 58/97 (59.79%), Query Frame = 3 Query: 396 RAIEASESERPIPDIRTGDVVEIKLEVPENRR-RLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683 R+IEA + + +PDI GD V++ +++ E + R+ Y+G+V++++N VE VF L+SP I IKV+ KVRRA+LYYLR+ Sbjct: 8 RSIEAEQLKSNLPDIYVGDTVKVGVKIKEGEKYRVQPYEGVVIAKRNGGINETITVRKVFQGVGVERVFLLHSPRIDSIKVLRRGKVRRAKLYYLRD 104
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_GEOSF (50S ribosomal protein L19 OS=Geobacter sp. (strain FRC-32) GN=rplS PE=3 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 2.951e-11 Identity = 35/96 (36.46%), Postives = 59/96 (61.46%), Query Frame = 3 Query: 399 AIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683 AIE + ++ IP R GD V++++++ E ++ R+ ++G+V+ RQN VE FPL+SP+I I+V++ +VRRA+LYYLR+ Sbjct: 6 AIEMEQMKKNIPGFRPGDTVKVQVKIVEGDKSRIQAFQGVVIGRQNGGIRESFTVRKISNGVGVERSFPLHSPSIDAIEVITRGQVRRAKLYYLRK 101 The following BLAST results are available for this feature:
BLAST of CX295772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 50
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295772 ID=CX295772; Name=CX295772; organism=Citrus clementina; type=EST; length=707bpback to top |