CX295772

Overview
NameCX295772
Unique NameCX295772
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295772_ssr324 microsatellite CX295772_ssr324:324..335. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig669 contig Ccv1_Contig669:1..707. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RK19_MESVI (50S ribosomal protein L19, chloroplastic OS=Mesostigma viride GN=rpl19 PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.034e-11
Identity = 36/95 (37.89%), Postives = 58/95 (61.05%), Query Frame = 3
Query:  402 IEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            IEA++ +  +P+I  GD V++ L + E N+ R+  Y+G+V+++ N                 VE +F ++SP I  I+V+S+ KVRRA+LYYLRE
Sbjct:   10 IEANQIKANLPNIYVGDYVKVGLLIQEGNKERVQPYEGVVIAKHNSASNSTITVRKMFQGIGVERIFLIHSPRITSIEVISNSKVRRAKLYYLRE 104          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_STRMU (50S ribosomal protein L19 OS=Streptococcus mutans GN=rplS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 35/96 (36.46%), Postives = 55/96 (57.29%), Query Frame = 3
Query:  396 RAIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 680
            +++  S+    IP+ R GD V +  +V E NR R+ I++G+V+SR+                  VE  FP ++P +++I+V  H KVRRA+LYYLR
Sbjct:    6 QSLTESQLRTDIPNFRPGDTVRVHAKVVEGNRERVQIFEGVVISRKGQGISEMYTVRKISSGVGVERTFPTHTPRVEKIEVTRHGKVRRAKLYYLR 101          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_SALTO (50S ribosomal protein L19 OS=Salinispora tropica (strain ATCC BAA-916 / DSM 44818 / CNB-440) GN=rplS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 3
Query:  378 MGILNKRAIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            M IL+  A++A      +PD R GD V++   V E NR R+ I++G+V+ RQ                  VE  +P+ SP I  I+VV+   VRRA+LYYLRE
Sbjct:    1 MNILD--ALDAQSKRTDLPDFRAGDTVKVHARVVEGNRSRVQIFQGVVIRRQGDGLRETFLVRKISFGVGVERTYPVNSPAIDRIEVVTRGDVRRAKLYYLRE 101          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_RHIEC (50S ribosomal protein L19 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 35/91 (38.46%), Postives = 52/91 (57.14%), Query Frame = 3
Query:  414 ESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            E++R +P+   GD V + ++V E NR R+  Y+G+ ++R                   VE VFP+YSP I+ + VV   KVRRA+LYYLR+
Sbjct:   16 EAKRTLPEFSPGDTVRVNVKVTEGNRTRVQAYEGVCIARSGGGLQENFTVRKISYGEGVERVFPVYSPMIESVDVVRRGKVRRAKLYYLRD 106          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_PARDP (50S ribosomal protein L19 OS=Paracoccus denitrificans (strain Pd 1222) GN=rplS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 37/88 (42.05%), Postives = 50/88 (56.82%), Query Frame = 3
Query:  423 RPIPDIRTGDVVEIKLEVPENRR-RLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            + IPD + GD V +  +V E  R R+ +Y+G+V+SR+                  VE VFPLYS NI  I VV   +VRRA+LYYLR+
Sbjct:   17 KDIPDFKAGDTVRVGYKVTEGTRTRVQMYEGVVISRKGGGIGASFTVRKISFGEGVERVFPLYSTNIDSITVVRRGRVRRAKLYYLRD 104          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_GLUOX (50S ribosomal protein L19 OS=Gluconobacter oxydans GN=rplS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 38/96 (39.58%), Postives = 52/96 (54.17%), Query Frame = 3
Query:  396 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 680
            R IE     R +P+   GD V + + V E  R R+  ++G+V++R N                 VE VFPLY+P+I  I+VV   KVRRA+LYYLR
Sbjct:   10 REIERLSGVRAVPEFIAGDTVRVGVRVVEGTRERVQSFEGVVIARSNKGLNSNFTVRKISNGEGVERVFPLYAPSIASIEVVRRGKVRRAKLYYLR 105          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_GEOSM (50S ribosomal protein L19 OS=Geobacter sp. (strain M21) GN=rplS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 34/96 (35.42%), Postives = 60/96 (62.50%), Query Frame = 3
Query:  399 AIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            AIE ++ ++ IP    GD +++++++ E ++ R+  ++G+ + RQN                 VE VFPL+SP+I+ I+VV+  +VRRA+LYYLR+
Sbjct:    6 AIEMAQMKKNIPKFIPGDTIKVQVKIVEGDKSRIQAFQGVCLGRQNGGIRESFTVRKISNGVGVERVFPLHSPSIEAIEVVTRGQVRRAKLYYLRK 101          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_GEOBB (50S ribosomal protein L19 OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=rplS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 34/96 (35.42%), Postives = 60/96 (62.50%), Query Frame = 3
Query:  399 AIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            AIE ++ ++ IP    GD +++++++ E ++ R+  ++G+ + RQN                 VE VFPL+SP+I+ I+VV+  +VRRA+LYYLR+
Sbjct:    6 AIEMAQMKKNIPKFIPGDTIKVQVKIVEGDKSRIQAFQGVCLGRQNGGIRESFTVRKISNGVGVERVFPLHSPSIEAIEVVTRGQVRRAKLYYLRK 101          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_CORK4 (50S ribosomal protein L19 OS=Corynebacterium kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=rplS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 36/102 (35.29%), Postives = 61/102 (59.80%), Query Frame = 3
Query:  378 MGILNKRAIEASESERPIPDIRTGDVVEIKLEVPENRR-RLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 680
            M IL+K  ++A+     IP+ R+GD V++ ++V E ++ R+ +++G+V+ RQ                  VE  FP+++PNI  I+V++   VRRA+LYYLR
Sbjct:    1 MNILDK--VDAASLRDDIPEFRSGDTVDVHVKVIEGQKSRIQVFRGVVIRRQGSGVRETFTVRKVSFGIGVERTFPVHTPNIDHIEVLTRGDVRRAKLYYLR 100          
BLAST of CX295772 vs. ExPASy Swiss-Prot
Match: RL19_CLOBL (50S ribosomal protein L19 OS=Clostridium botulinum (strain Langeland / NCTC 10281 / Type F) GN=rplS PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 36/97 (37.11%), Postives = 55/97 (56.70%), Query Frame = 3
Query:  396 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRE 683
            +AIEA +    +P+   GD V++  ++ E  R R+ +++G V+ RQN                 VE  FP+ SP I++I+VV   KVRRA+LYYLR+
Sbjct:    6 KAIEAEQVRSDLPEFNVGDTVKVHQKIKEGTRERVQVFEGTVLKRQNGGARETFTVRRVAYNVAVEKTFPVNSPLIEKIQVVRKGKVRRAKLYYLRD 102          
The following BLAST results are available for this feature:
BLAST of CX295772 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 50
Match NameE-valueIdentityDescription
RK19_MESVI5.034e-1137.8950S ribosomal protein L19, chloroplastic OS=Mesost... [more]
RL19_STRMU6.575e-1136.4650S ribosomal protein L19 OS=Streptococcus mutans ... [more]
RL19_SALTO6.575e-1138.8350S ribosomal protein L19 OS=Salinispora tropica (... [more]
RL19_RHIEC6.575e-1138.4650S ribosomal protein L19 OS=Rhizobium etli (strai... [more]
RL19_PARDP6.575e-1142.0550S ribosomal protein L19 OS=Paracoccus denitrific... [more]
RL19_GLUOX6.575e-1139.5850S ribosomal protein L19 OS=Gluconobacter oxydans... [more]
RL19_GEOSM6.575e-1135.4250S ribosomal protein L19 OS=Geobacter sp. (strain... [more]
RL19_GEOBB6.575e-1135.4250S ribosomal protein L19 OS=Geobacter bemidjiensi... [more]
RL19_CORK46.575e-1135.2950S ribosomal protein L19 OS=Corynebacterium kropp... [more]
RL19_CLOBL6.575e-1137.1150S ribosomal protein L19 OS=Clostridium botulinum... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05075G03SK DroRLeaf1 Citrus clementina cDNA clone C05075G03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295772 ID=CX295772; Name=CX295772; organism=Citrus clementina; type=EST; length=707bp
GAGGGGGCTCCCAGGTTCTTCCTCAGGCTCTGCATTGGATCCCAAGAAGT
TCCACTCAGTGCATTCCTTCAAAGAGGCTAGGGTTTTCAACAGTTCTTTC
TCGCGGCCCCTTTGTGAGCCATGGGGTTTCAGTTTCAACGAAGCCTATAG
GGTGGAATTTGGGCTTTTTCGTAAATGCCCAAGTGAAAGATAGTTTTGTG
GTTAGGGCGGAGTCAAACGAAGAAGCGGAAGCGAATGAGAGTATTGAAGA
GGAGCAAAACGAGGCCGTTCAAGCACAAGGTGATGTTGTGGTAGCTGTAG
AAGCTGAATCTGAGGATAAGGTTGAAGAAGAAGAAGTGAAAGCACCCAGA
AAGCCCAGGGTTAAACTTGGAGATATCATGGGGATATTGAATAAGAGGGC
GATTGAGGCATCGGAGAGTGAAAGACCAATTCCAGATATTAGGACGGGTG
ATGTTGTGGAGATTAAATTGGAAGTTCCTGAAAATAGGCGTAGGTTGTCC
ATTTACAAAGGTATTGTTATGTCAAGGCAAAATGCTGGGATCCACACTAC
AATTCGAATTCGGAGGATTATTGCTGGCATAGGGGTTGAGATCGTATTCC
CTCTTTATTCGCCAAACATCAAGGAGATAAAAGTTGTCTCCCACAGGAAA
GTGAGGAGGGCAAGGCTGTACTATCTTAGAGAAAGCTTCCTAGACTCTCA
CTTTCAA
back to top