CX295781

Overview
NameCX295781
Unique NameCX295781
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RAB5A_MOUSE (Ras-related protein Rab-5A OS=Mus musculus GN=Rab5a PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.372e-45
Identity = 90/151 (59.60%), Postives = 115/151 (76.16%), Query Frame = 3 
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 455
            LLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKT+ N+N++F
Sbjct:   25 LLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 174
[Close]
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RAB5A_MACFA (Ras-related protein Rab-5A OS=Macaca fascicularis GN=RAB5A PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.372e-45
Identity = 90/151 (59.60%), Postives = 115/151 (76.16%), Query Frame = 3 
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 455
            LLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKT+ N+N++F
Sbjct:   25 LLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 174
[Close]
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RAB5A_HUMAN (Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5A PE=1 SV=2)

HSP 1 Score: 182.185 bits (461), Expect = 2.372e-45
Identity = 90/151 (59.60%), Postives = 115/151 (76.16%), Query Frame = 3 
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 455
            LLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKT+ N+N++F
Sbjct:   25 LLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 174
[Close]
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RAB5A_CANFA (Ras-related protein Rab-5A OS=Canis familiaris GN=RAB5A PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.372e-45
Identity = 90/151 (59.60%), Postives = 115/151 (76.16%), Query Frame = 3 
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 455
            LLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKT+ N+N++F
Sbjct:   25 LLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 174
[Close]
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RAB5A_BOVIN (Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.372e-45
Identity = 90/151 (59.60%), Postives = 115/151 (76.16%), Query Frame = 3 
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 455
            LLG+S VGKS +VLRFV+GQF    + T+GA+FL+QT+ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ +SF +A+ WVKELQ+  SP+IV+AL GNKADL  KR V  Q+   YA+ N + F+ETSAKT+ N+N++F
Sbjct:   25 LLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIF 174
[Close]
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RAB5B_PONAB (Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.008e-44
Identity = 89/151 (58.94%), Postives = 113/151 (74.83%), Query Frame = 3 
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 455
            LLG+S VGKS +VLRFV+GQF    + T+GA+FL+Q++ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ ++F +A+ WVKELQ+  SP IV+AL GNKADL  KR V  ++   YA+ N + F+ETSAKTA N+N LF
Sbjct:   25 LLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLF 174
[Close]
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RAB5B_MOUSE (Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.008e-44
Identity = 89/151 (58.94%), Postives = 113/151 (74.83%), Query Frame = 3 
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 455
            LLG+S VGKS +VLRFV+GQF    + T+GA+FL+Q++ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ ++F +A+ WVKELQ+  SP IV+AL GNKADL  KR V  ++   YA+ N + F+ETSAKTA N+N LF
Sbjct:   25 LLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLF 174
[Close]
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RAB5B_HUMAN (Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.008e-44
Identity = 89/151 (58.94%), Postives = 113/151 (74.83%), Query Frame = 3 
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 455
            LLG+S VGKS +VLRFV+GQF    + T+GA+FL+Q++ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ ++F +A+ WVKELQ+  SP IV+AL GNKADL  KR V  ++   YA+ N + F+ETSAKTA N+N LF
Sbjct:   25 LLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLF 174
[Close]
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RAB5B_CHICK (Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.008e-44
Identity = 89/151 (58.94%), Postives = 113/151 (74.83%), Query Frame = 3 
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 455
            LLG+S VGKS +VLRFV+GQF    + T+GA+FL+Q++ L D TTVKFEIWDTAGQERY +LAP+YYRG       YDIT+ ++F +A+ WVKELQ+  SP IV+AL GNKADL  KR V  ++   YA+ N + F+ETSAKTA N+N LF
Sbjct:   25 LLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDD-TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVKELQRQASPSIVIALAGNKADLASKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLF 174
[Close]
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RHA1_ARATH (Ras-related protein RHA1 OS=Arabidopsis thaliana GN=RHA1 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.788e-43
Identity = 86/151 (56.95%), Postives = 114/151 (75.50%), Query Frame = 3 
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 455
            LLGD G GKS +VLRFV+ QF    + T+GA+F SQT+A+ D+T VKFEIWDTAGQERY +LAP+YYRG       +DIT+  SF +A+ WV+ELQ  G+P++VMAL GNKADL + R+V A++   YA++N +FF+ETSAKTA N+  +F
Sbjct:   15 LLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDAT-VKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDITNQASFERAKKWVQELQAQGNPNMVMALAGNKADLLDARKVSAEEAEIYAQENSLFFMETSAKTATNVKDIF 164
The following BLAST results are available for this feature:
BLAST of CX295781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB5A_MOUSE2.372e-4559.60Ras-related protein Rab-5A OS=Mus musculus GN=Rab5... [more]
RAB5A_MACFA2.372e-4559.60Ras-related protein Rab-5A OS=Macaca fascicularis ... [more]
RAB5A_HUMAN2.372e-4559.60Ras-related protein Rab-5A OS=Homo sapiens GN=RAB5... [more]
RAB5A_CANFA2.372e-4559.60Ras-related protein Rab-5A OS=Canis familiaris GN=... [more]
RAB5A_BOVIN2.372e-4559.60Ras-related protein Rab-5A OS=Bos taurus GN=RAB5A ... [more]
RAB5B_PONAB2.008e-4458.94Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5... [more]
RAB5B_MOUSE2.008e-4458.94Ras-related protein Rab-5B OS=Mus musculus GN=Rab5... [more]
RAB5B_HUMAN2.008e-4458.94Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5... [more]
RAB5B_CHICK2.008e-4458.94Ras-related protein Rab-5B OS=Gallus gallus GN=RAB... [more]
RHA1_ARATH3.788e-4356.95Ras-related protein RHA1 OS=Arabidopsis thaliana G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05075G12SK DroRLeaf1 Citrus clementina cDNA clone C05075G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295781 ID=CX295781; Name=CX295781; organism=Citrus clementina; type=EST; length=704bp
TTCTGTTAGGTGATTCAGGTGTTGGGAAAAGTTGTATTGTTCTCCGCTTT
GTTCGTGGCCAGTTTGACCCGACATCCAAGGTAACTGTTGGAGCCTCCTT
CTTGTCACAGACGATAGCTTTGCAAGATTCTACAACAGTTAAGTTTGAAA
TATGGGATACAGCTGGTCAAGAAAGATATGCTGCTCTGGCACCACTATAT
TACAGAGGTGCTGCAGTCGCAGTTGTTGTGTATGATATAACTAGTCCAGA
TTCATTCAACAAAGCGCAATACTGGGTTAAGGAGCTACAAAAACATGGAA
GTCCTGACATAGTCATGGCTTTAGTTGGTAACAAGGCTGATCTTCATGAG
AAGCGAGAAGTACCAGCTCAAGATGGCATTGAGTATGCGGAGAAGAATGG
GATGTTCTTTATCGAAACATCGGCCAAGACTGCAGATAATATAAATCAGC
TGTTTGAGGTACTCATTACATGTACTTCTTCATATTGTAGCTAGGTTATA
TTAGCTGTAGTTGTAACTGTATATAACTGTAAACTCTGTAGATAGCTCTT
GTTAACTACCATTTGCATTTCAAATTATAATAAAGACGGGCTTTGAGCCC
AAGGACAGGTGACGTCTTTTAATTTTCTTGTTCCCTTCTTTCCTCTCTCT
ATGGGGATGGTTGGGGTACAGGCTAACATCTCTGACTGCTATATATGCAG
GTGA
back to top