CX295781

Overview
NameCX295781
Unique NameCX295781
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RAP2A_PONAB (Ras-related protein Rap-2a OS=Pongo abelii GN=RAP2A PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.444e-15
Identity = 56/165 (33.94%), Postives = 86/165 (52.12%), Query Frame = 3
Query:    3 LLGDSGVGKSCIVLRFVRGQF----DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYW------VKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 467
            +LG  GVGKS + ++FV G F    DPT +      F  + I +  S +V  EI DTAG E++A++  LY +        Y + +  SF   +        VK  +K     + + LVGNK DL  +REV + +G   AE+ G  F+ETSAK+   +++LF  ++
Sbjct:    8 VLGSGGVGKSALTVQFVTGTFIEKYDPTIE-----DFYRKEIEVDSSPSV-LEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK-----VPVILVGNKVDLESEREVSSNEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161          
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RAP2A_MOUSE (Ras-related protein Rap-2a OS=Mus musculus GN=Rap2a PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 7.444e-15
Identity = 56/165 (33.94%), Postives = 86/165 (52.12%), Query Frame = 3
Query:    3 LLGDSGVGKSCIVLRFVRGQF----DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYW------VKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 467
            +LG  GVGKS + ++FV G F    DPT +      F  + I +  S +V  EI DTAG E++A++  LY +        Y + +  SF   +        VK  +K     + + LVGNK DL  +REV + +G   AE+ G  F+ETSAK+   +++LF  ++
Sbjct:    8 VLGSGGVGKSALTVQFVTGTFIEKYDPTIE-----DFYRKEIEVDSSPSV-LEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK-----VPVILVGNKVDLESEREVSSNEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161          
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RAP2A_HUMAN (Ras-related protein Rap-2a OS=Homo sapiens GN=RAP2A PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.444e-15
Identity = 56/165 (33.94%), Postives = 86/165 (52.12%), Query Frame = 3
Query:    3 LLGDSGVGKSCIVLRFVRGQF----DPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYW------VKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 467
            +LG  GVGKS + ++FV G F    DPT +      F  + I +  S +V  EI DTAG E++A++  LY +        Y + +  SF   +        VK  +K     + + LVGNK DL  +REV + +G   AE+ G  F+ETSAK+   +++LF  ++
Sbjct:    8 VLGSGGVGKSALTVQFVTGTFIEKYDPTIE-----DFYRKEIEVDSSPSV-LEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK-----VPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIV 161          
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RAB28_PONAB (Ras-related protein Rab-28 OS=Pongo abelii GN=RAB28 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.444e-15
Identity = 47/155 (30.32%), Postives = 72/155 (46.45%), Query Frame = 3
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYW---VKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 458
            +LGD   GK+ +   F +  F    K T+G  F  + I L  +  V  +IWD  GQ     +   Y  G       YDIT+  SF   + W   VK++ +      ++ALVGNK DL   R +  +  + + ++NG      SAKT D++   F+
Sbjct:   17 VLGDGASGKTSLATCFAQETFGKRYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETRPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQ 171          
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: DJC27_PONAB (DnaJ homolog subfamily C member 27 OS=Pongo abelii GN=DNAJC27 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.444e-15
Identity = 45/166 (27.11%), Postives = 80/166 (48.19%), Query Frame = 3
Query:    6 LGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSP-----DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSYC 488
            +G++ VGKSCI+ R+   +F      T+G  +    + ++D   +K  I+D AG   +  +   +Y+        YD+   DSF+    W+ E+++   P     +I+  +  NK D  + R V   +G  +AE  G  + ETSA+T + IN++F+         C
Sbjct:   22 MGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVHVRDRE-IKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDAWLAEMKQELGPHGNMENIIFVVCANKIDCTKHRCVDESEGRLWAESKGFLYFETSAQTGEGINEMFQTFYISIVDLC 186          
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: DJC27_HUMAN (DnaJ homolog subfamily C member 27 OS=Homo sapiens GN=DNAJC27 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 7.444e-15
Identity = 45/166 (27.11%), Postives = 80/166 (48.19%), Query Frame = 3
Query:    6 LGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSP-----DIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLITCTSSYC 488
            +G++ VGKSCI+ R+   +F      T+G  +    + ++D   +K  I+D AG   +  +   +Y+        YD+   DSF+    W+ E+++   P     +I+  +  NK D  + R V   +G  +AE  G  + ETSA+T + IN++F+         C
Sbjct:   22 MGNAEVGKSCIIKRYCEKRFVSKYLATIGIDYGVTKVHVRDRE-IKVNIFDMAGHPFFYEVRNEFYKDTQGVILVYDVGQKDSFDALDAWLAEMKQELGPHGNMENIIFVVCANKIDCTKHRCVDESEGRLWAESKGFLYFETSAQTGEGINEMFQTFYISIVDLC 186          
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RIT2_MOUSE (GTP-binding protein Rit2 OS=Mus musculus GN=Rit2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 52/157 (33.12%), Postives = 79/157 (50.32%), Query Frame = 3
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKEL--QKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 467
            +LG  GVGKS + ++F+  QF      T+  ++ +Q     D+     +I DTAGQ  + A+   Y RG       Y +T   SF +A  + KEL  Q   + +I + LVGNK DL + R+V  ++G+  A      F ETSA     I+  F+ L+
Sbjct:   25 MLGAGGVGKSAVTMQFISHQFPDYHDPTIEDAYKTQVRI--DNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKF-KELIFQVRHTYEIPLVLVGNKIDLEQFRQVSTEEGMNLARDYNCAFFETSAALRFGIDDAFQGLV 178          
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RASK_ORYLA (GTPase KRas OS=Oryzias latipes GN=kras1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 50/156 (32.05%), Postives = 79/156 (50.64%), Query Frame = 3
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQK-HGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 467
            ++G  GVGKS + ++ ++  F      T+  S+  Q +   D  T   +I DTAGQE Y+A+   Y R        + I +  SF    ++ +++++   S D+ M LVGNK DL   R V  +   + A   G+ FIETSAKT   ++  F  L+
Sbjct:    8 VVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVI--DGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDL-PTRTVDTKQAQDLARSFGIPFIETSAKTRQGVDDAFYTLV 160          
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RAC6_ARATH (Rac-like GTP-binding protein ARAC6 OS=Arabidopsis thaliana GN=ARAC6 PE=1 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 9.722e-15
Identity = 51/166 (30.72%), Postives = 83/166 (50.00%), Query Frame = 3
Query:    6 LGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSF-NKAQYWVKELQKHGSPDIVMALVGNKADLHEKRE----------VPAQDGIEYAEKNGM-FFIETSAKTADNINQLFEVLI 467
            +GD  VGK+C+++ +    F      TV  +F +  +   +  TV   +WDTAGQE Y  L PL YRG       + + S  S+ N ++ W+ EL KH +P + + LVG K DL + ++          +    G E  +  G   +IE S+K+ +N+  +F+  I
Sbjct:   12 VGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVV--NGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPEL-KHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAI 174          
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RIT2_RAT (GTP-binding protein Rit2 OS=Rattus norvegicus GN=Rit2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.270e-14
Identity = 52/157 (33.12%), Postives = 79/157 (50.32%), Query Frame = 3
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKEL--QKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 467
            +LG  GVGKS + ++F+  QF      T+  ++ +Q     D+     +I DTAGQ  + A+   Y RG       Y +T   SF +A  + KEL  Q   + +I + LVGNK DL + R+V  ++G+  A      F ETSA     I+  F+ L+
Sbjct:   25 MLGAGGVGKSAVTMQFISHQFPDYHDPTIEDAYKTQVRI--DNEPAYLDILDTAGQAEFTAMREQYMRGGEGFIICYSVTDRQSFQEAAKF-KELIFQVRHTYEIPLVLVGNKIDLEQFRQVSTEEGMTLARDYNCAFFETSAALRFGIDDAFQGLV 178          
The following BLAST results are available for this feature:
BLAST of CX295781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAP2A_PONAB7.444e-1533.94Ras-related protein Rap-2a OS=Pongo abelii GN=RAP2... [more]
RAP2A_MOUSE7.444e-1533.94Ras-related protein Rap-2a OS=Mus musculus GN=Rap2... [more]
RAP2A_HUMAN7.444e-1533.94Ras-related protein Rap-2a OS=Homo sapiens GN=RAP2... [more]
RAB28_PONAB7.444e-1530.32Ras-related protein Rab-28 OS=Pongo abelii GN=RAB2... [more]
DJC27_PONAB7.444e-1527.11DnaJ homolog subfamily C member 27 OS=Pongo abelii... [more]
DJC27_HUMAN7.444e-1527.11DnaJ homolog subfamily C member 27 OS=Homo sapiens... [more]
RIT2_MOUSE9.722e-1533.12GTP-binding protein Rit2 OS=Mus musculus GN=Rit2 P... [more]
RASK_ORYLA9.722e-1532.05GTPase KRas OS=Oryzias latipes GN=kras1 PE=2 SV=1[more]
RAC6_ARATH9.722e-1530.72Rac-like GTP-binding protein ARAC6 OS=Arabidopsis ... [more]
RIT2_RAT1.270e-1433.12GTP-binding protein Rit2 OS=Rattus norvegicus GN=R... [more]

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Properties
Property NameValue
Genbank descriptionC05075G12SK DroRLeaf1 Citrus clementina cDNA clone C05075G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295781 ID=CX295781; Name=CX295781; organism=Citrus clementina; type=EST; length=704bp
TTCTGTTAGGTGATTCAGGTGTTGGGAAAAGTTGTATTGTTCTCCGCTTT
GTTCGTGGCCAGTTTGACCCGACATCCAAGGTAACTGTTGGAGCCTCCTT
CTTGTCACAGACGATAGCTTTGCAAGATTCTACAACAGTTAAGTTTGAAA
TATGGGATACAGCTGGTCAAGAAAGATATGCTGCTCTGGCACCACTATAT
TACAGAGGTGCTGCAGTCGCAGTTGTTGTGTATGATATAACTAGTCCAGA
TTCATTCAACAAAGCGCAATACTGGGTTAAGGAGCTACAAAAACATGGAA
GTCCTGACATAGTCATGGCTTTAGTTGGTAACAAGGCTGATCTTCATGAG
AAGCGAGAAGTACCAGCTCAAGATGGCATTGAGTATGCGGAGAAGAATGG
GATGTTCTTTATCGAAACATCGGCCAAGACTGCAGATAATATAAATCAGC
TGTTTGAGGTACTCATTACATGTACTTCTTCATATTGTAGCTAGGTTATA
TTAGCTGTAGTTGTAACTGTATATAACTGTAAACTCTGTAGATAGCTCTT
GTTAACTACCATTTGCATTTCAAATTATAATAAAGACGGGCTTTGAGCCC
AAGGACAGGTGACGTCTTTTAATTTTCTTGTTCCCTTCTTTCCTCTCTCT
ATGGGGATGGTTGGGGTACAGGCTAACATCTCTGACTGCTATATATGCAG
GTGA
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