CX295781

Overview
NameCX295781
Unique NameCX295781
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length704
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RAB2_LYMST (Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.764e-32
Identity = 62/151 (41.06%), Postives = 101/151 (66.89%), Query Frame = 3
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 455
            ++GD+GVGKSC++L+F   +F P   +T+G  F ++ I + D   +K +IWDTAGQE + ++   YYRG       YDIT  D+FN    W+++ ++H + ++V+ L+GNK+DL  +REV  ++G  +A ++G+ F+ETSAKTA N+ + F
Sbjct:   11 IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITI-DGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEAF 160          
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RAB30_MOUSE (Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.008e-32
Identity = 64/151 (42.38%), Postives = 98/151 (64.90%), Query Frame = 3
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 455
            L+G++GVGK+C+V RF +G F P    T+G  F+ +T+ + +   VK +IWDTAGQER+ ++   YYR        YDIT  +SF     W++E++++ S  ++  LVGNK DL E+REV  Q   E++E   M+++ETSAK +DN+ +LF
Sbjct:   14 LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF 163          
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RAB30_HUMAN (Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.008e-32
Identity = 64/151 (42.38%), Postives = 98/151 (64.90%), Query Frame = 3
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 455
            L+G++GVGK+C+V RF +G F P    T+G  F+ +T+ + +   VK +IWDTAGQER+ ++   YYR        YDIT  +SF     W++E++++ S  ++  LVGNK DL E+REV  Q   E++E   M+++ETSAK +DN+ +LF
Sbjct:   14 LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF 163          
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RAB30_BOVIN (Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.008e-32
Identity = 64/151 (42.38%), Postives = 98/151 (64.90%), Query Frame = 3
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 455
            L+G++GVGK+C+V RF +G F P    T+G  F+ +T+ + +   VK +IWDTAGQER+ ++   YYR        YDIT  +SF     W++E++++ S  ++  LVGNK DL E+REV  Q   E++E   M+++ETSAK +DN+ +LF
Sbjct:   14 LIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF 163          
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: YPT52_YEAST (GTP-binding protein YPT52 OS=Saccharomyces cerevisiae GN=YPT52 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 3.929e-32
Identity = 76/180 (42.22%), Postives = 105/180 (58.33%), Query Frame = 3
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDS-------TTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQ-KHGSPDIVMALVGNKADLHEK--------------------REVPAQDGIEYAEKNGMFFIETSAKTADNINQLFE 458
            LLGDS VGKS IV RFV+  FD   + T+GA+FLSQ+I +  +         +KFEIWDTAGQERY +LAP+YYR        YDIT  DS  KA+ WV EL+ K G  D+V+ L+GNK DL ++                    R +  ++  +YA++ G+ F E SAKT + + ++F+
Sbjct:    8 LLGDSSVGKSSIVHRFVKDTFDELRESTIGAAFLSQSITIHPNDGNETKDVVIKFEIWDTAGQERYKSLAPMYYRNANAALVVYDITQEDSLQKARNWVDELKNKVGDDDLVIYLLGNKVDLCQETPSTETSPDSNEGGDEEQKVRAISTEEAKQYAQEQGLLFREVSAKTGEGVKEIFQ 187          
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica GN=RIC2 PE=2 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 3.929e-32
Identity = 67/156 (42.95%), Postives = 97/156 (62.18%), Query Frame = 3
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 470
            L+GDSGVGKS ++ RF R +F   SK T+G  F ++++ + D   VK +IWDTAGQERY A+   YYRG       YD+T   +F   + W+KEL+ H  P+IV+ LVGNK+DL     V   +G  +AE+  ++F+ETSA  + N+   F  ++T
Sbjct:   19 LIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQV-DGKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLT 173          
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: YPT31_YEAST (GTP-binding protein YPT31/YPT8 OS=Saccharomyces cerevisiae GN=YPT31 PE=1 SV=3)

HSP 1 Score: 137.887 bits (346), Expect = 5.131e-32
Identity = 63/155 (40.65%), Postives = 100/155 (64.52%), Query Frame = 3
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 467
            L+GDSGVGKS ++ RF + +F+  SK T+G  F ++T+ + D   +K +IWDTAGQERY A+   YYRG       YDI+   S+    +W+ EL+++   ++ + L+GNK+DL   R VP ++   +A++N + F ETSA  ++N+++ FE LI
Sbjct:   18 LIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEI-DGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELI 171          
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum GN=RAB11B PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.131e-32
Identity = 71/156 (45.51%), Postives = 97/156 (62.18%), Query Frame = 3
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLIT 470
            L+GDSGVGKS ++ RF R +F+  SK T+G  F +++I + D   VK +IWDTAGQERY A+   YYRG       YDIT   +F   + W+KEL+ H   +IV+ LVGNKADL   R V  +D   +AE+   FF+ETSA  + N+   F  ++T
Sbjct:   19 LIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKI-VKAQIWDTAGQERYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLT 173          
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RB1BV_BETVU (Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB1BV PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.701e-32
Identity = 69/152 (45.39%), Postives = 95/152 (62.50%), Query Frame = 3
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGSPDIVMALVGNKADLHE-KREVPAQDGIEYAEKNGMFFIETSAKTADNINQLF 455
            L+GDSGVGKSC++LRF  G F  +   T+G  F  +TI L D   +K +IWDTAGQER+  +   YYRG       YD+T   SFN  + W++ +++H S ++   LVGNKAD+ E KR VP   G   A++ G+ F ETSAKT  N+ ++F
Sbjct:   20 LIGDSGVGKSCLLLRFSDGSFTTSFITTIGIDFKIRTIEL-DGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDESSFNNIRNWIRNIEQHASDNVNKILVGNKADMDESKRAVPTAKGQALADEYGIKFFETSAKTNLNVEEVF 170          
BLAST of CX295781 vs. ExPASy Swiss-Prot
Match: RB18B_DANRE (Ras-related protein Rab-18-B OS=Danio rerio GN=rab18b PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 6.701e-32
Identity = 71/156 (45.51%), Postives = 96/156 (61.54%), Query Frame = 3
Query:    3 LLGDSGVGKSCIVLRFVRGQFDPTSKVTVGASFLSQTIALQDSTTVKFEIWDTAGQERYAALAPLYYRGXXXXXXXYDITSPDSFNKAQYWVKELQKHGS-PDIVMALVGNKADLHEKREVPAQDGIEYAEKNGMFFIETSAKTADNINQLFEVLI 467
            ++G+SGVGKS ++LRF    FDP    T+G  F  +TIA+ D    K  IWDTAGQER+  L P YYRG       YD+T  D+F K + W+ EL+ + +  D+V  LVGNK D  + REV   +G+++A K+ M FIE SAKT D +   FE L+
Sbjct:   13 IIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAI-DGNRAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTKRDTFTKLENWLNELETYCTRNDLVKMLVGNKID-KDNREVDRNEGLKFARKHSMLFIEASAKTRDGVQCAFEELV 166          
The following BLAST results are available for this feature:
BLAST of CX295781 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB2_LYMST1.764e-3241.06Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=... [more]
RAB30_MOUSE3.008e-3242.38Ras-related protein Rab-30 OS=Mus musculus GN=Rab3... [more]
RAB30_HUMAN3.008e-3242.38Ras-related protein Rab-30 OS=Homo sapiens GN=RAB3... [more]
RAB30_BOVIN3.008e-3242.38Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 ... [more]
YPT52_YEAST3.929e-3242.22GTP-binding protein YPT52 OS=Saccharomyces cerevis... [more]
RIC2_ORYSJ3.929e-3242.95Ras-related protein RIC2 OS=Oryza sativa subsp. ja... [more]
YPT31_YEAST5.131e-3240.65GTP-binding protein YPT31/YPT8 OS=Saccharomyces ce... [more]
RB11B_TOBAC5.131e-3245.51Ras-related protein Rab11B OS=Nicotiana tabacum GN... [more]
RB1BV_BETVU6.701e-3245.39Ras-related protein RAB1BV OS=Beta vulgaris GN=RAB... [more]
RB18B_DANRE6.701e-3245.51Ras-related protein Rab-18-B OS=Danio rerio GN=rab... [more]

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Properties
Property NameValue
Genbank descriptionC05075G12SK DroRLeaf1 Citrus clementina cDNA clone C05075G12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295781 ID=CX295781; Name=CX295781; organism=Citrus clementina; type=EST; length=704bp
TTCTGTTAGGTGATTCAGGTGTTGGGAAAAGTTGTATTGTTCTCCGCTTT
GTTCGTGGCCAGTTTGACCCGACATCCAAGGTAACTGTTGGAGCCTCCTT
CTTGTCACAGACGATAGCTTTGCAAGATTCTACAACAGTTAAGTTTGAAA
TATGGGATACAGCTGGTCAAGAAAGATATGCTGCTCTGGCACCACTATAT
TACAGAGGTGCTGCAGTCGCAGTTGTTGTGTATGATATAACTAGTCCAGA
TTCATTCAACAAAGCGCAATACTGGGTTAAGGAGCTACAAAAACATGGAA
GTCCTGACATAGTCATGGCTTTAGTTGGTAACAAGGCTGATCTTCATGAG
AAGCGAGAAGTACCAGCTCAAGATGGCATTGAGTATGCGGAGAAGAATGG
GATGTTCTTTATCGAAACATCGGCCAAGACTGCAGATAATATAAATCAGC
TGTTTGAGGTACTCATTACATGTACTTCTTCATATTGTAGCTAGGTTATA
TTAGCTGTAGTTGTAACTGTATATAACTGTAAACTCTGTAGATAGCTCTT
GTTAACTACCATTTGCATTTCAAATTATAATAAAGACGGGCTTTGAGCCC
AAGGACAGGTGACGTCTTTTAATTTTCTTGTTCCCTTCTTTCCTCTCTCT
ATGGGGATGGTTGGGGTACAGGCTAACATCTCTGACTGCTATATATGCAG
GTGA
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