CX295786

Overview
NameCX295786
Unique NameCX295786
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length684
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295786_ssr9 microsatellite CX295786_ssr9:9..20. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig671 contig Ccv1_Contig671:1..685. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295786 vs. ExPASy Swiss-Prot
Match: UBC9_XENLA (SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=ube2i PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.052e-26
Identity = 60/149 (40.27%), Postives = 84/149 (56.38%), Query Frame = 1
Query:  166 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 591
            MS  A  RL ++ K  ++D P G    P  N     ++M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CX295786 vs. ExPASy Swiss-Prot
Match: UBC9_SPETR (SUMO-conjugating enzyme UBC9 OS=Spermophilus tridecemlineatus GN=UBE2I PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.052e-26
Identity = 60/149 (40.27%), Postives = 84/149 (56.38%), Query Frame = 1
Query:  166 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 591
            MS  A  RL ++ K  ++D P G    P  N     ++M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CX295786 vs. ExPASy Swiss-Prot
Match: UBC9_RAT (SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.052e-26
Identity = 60/149 (40.27%), Postives = 84/149 (56.38%), Query Frame = 1
Query:  166 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 591
            MS  A  RL ++ K  ++D P G    P  N     ++M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CX295786 vs. ExPASy Swiss-Prot
Match: UBC9_MOUSE (SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ube2i PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.052e-26
Identity = 60/149 (40.27%), Postives = 84/149 (56.38%), Query Frame = 1
Query:  166 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 591
            MS  A  RL ++ K  ++D P G    P  N     ++M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CX295786 vs. ExPASy Swiss-Prot
Match: UBC9_HUMAN (SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UBE2I PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.052e-26
Identity = 60/149 (40.27%), Postives = 84/149 (56.38%), Query Frame = 1
Query:  166 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 591
            MS  A  RL ++ K  ++D P G    P  N     ++M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CX295786 vs. ExPASy Swiss-Prot
Match: UBC9_DICDI (Sumo-conjugating enzyme ubc9 OS=Dictyostelium discoideum GN=ubc9 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.052e-26
Identity = 57/142 (40.14%), Postives = 80/142 (56.34%), Query Frame = 1
Query:  187 RLMRDFKRLQQDPPAGISGAPQDNS-----IMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--WSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 591
            RL  + K  ++D P G    P  N+     + +WN  I G   T W+GG + L ++FTEDYP+KPP  RF    FHPN+Y  G++CL IL  +  W P   +  +L  IQ LL +PNP SPA      +F  NK EY+++V+
Sbjct:    8 RLSEERKNWRRDHPYGFFARPSTNTDGSLNLYVWNCGIPGKTKTNWEGGVYPLIMEFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEEADWKPSVTIKTVLLGIQDLLDNPNPKSPAQQLPIHLFLTNKEEYDKKVK 149          
BLAST of CX295786 vs. ExPASy Swiss-Prot
Match: UBC9_CHICK (SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=UBE2I PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.052e-26
Identity = 60/149 (40.27%), Postives = 84/149 (56.38%), Query Frame = 1
Query:  166 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 591
            MS  A  RL ++ K  ++D P G    P  N     ++M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CX295786 vs. ExPASy Swiss-Prot
Match: UBC9B_DANRE (SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=ube2ib PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.052e-26
Identity = 60/149 (40.27%), Postives = 84/149 (56.38%), Query Frame = 1
Query:  166 MSTPARKRLMRDFKRLQQDPPAGISGAPQDN-----SIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVR 591
            MS  A  RL ++ K  ++D P G    P  N     ++M W   I G   TPW+GG FKL + F +DYP+ PP  +F   +FHPN+Y  G++CL IL+    W P   +  IL  IQ LL +PN   PA +EA  ++ +N+ EY +RVR
Sbjct:    1 MSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVR 149          
BLAST of CX295786 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.052e-26
Identity = 61/156 (39.10%), Postives = 91/156 (58.33%), Query Frame = 1
Query:  184 KRLMRDFKRLQQDPPAGIS-GAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDIL-------------QNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQS 609
            K+ + D +R+  D   G S G   DN I  W  ++ GP DT ++GG FK  L F  DYP KPP ++F+S ++HPNI  +G++C+ IL             + +W P++ V  IL S+ S+L DPN  SPAN +AA+M  EN  E+ ++V + V +S
Sbjct:    9 KKQLADMRRVPVD---GFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRS 161          
BLAST of CX295786 vs. ExPASy Swiss-Prot
Match: UB2E2_MOUSE (Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus GN=Ube2e2 PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.052e-26
Identity = 58/146 (39.73%), Postives = 87/146 (59.59%), Query Frame = 1
Query:  157 AVRMSTPARKRLMRDFKRLQQDPPAGISGAPQDNSIMLWNAVIFGPDDTPWDGGTFKLTLQFTEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVRE 594
            A ++ST A KR+ ++   +  DPP   S  P+ ++I  W + I GP  + ++GG F L + F+ DYP KPP V F +R++H NI + G ICLDIL++ WSP   ++ +L SI SLL D NP  P     A  +  N+ E++R  R+
Sbjct:   50 AAKLSTSA-KRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQ 194          
The following BLAST results are available for this feature:
BLAST of CX295786 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 254
Match NameE-valueIdentityDescription
UBC9_XENLA1.052e-2640.27SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=... [more]
UBC9_SPETR1.052e-2640.27SUMO-conjugating enzyme UBC9 OS=Spermophilus tride... [more]
UBC9_RAT1.052e-2640.27SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus ... [more]
UBC9_MOUSE1.052e-2640.27SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ub... [more]
UBC9_HUMAN1.052e-2640.27SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UB... [more]
UBC9_DICDI1.052e-2640.14Sumo-conjugating enzyme ubc9 OS=Dictyostelium disc... [more]
UBC9_CHICK1.052e-2640.27SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=U... [more]
UBC9B_DANRE1.052e-2640.27SUMO-conjugating enzyme UBC9-B OS=Danio rerio GN=u... [more]
UBC7_CAEEL1.052e-2639.10Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]
UB2E2_MOUSE1.052e-2639.73Ubiquitin-conjugating enzyme E2 E2 OS=Mus musculus... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05075H05SK DroRLeaf1 Citrus clementina cDNA clone C05075H05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295786 ID=CX295786; Name=CX295786; organism=Citrus clementina; type=EST; length=684bp
CTGAACGACTCTCTCTCTCTTGTTCCTCTGATCAAATTGAGTACCATGGA
ATTCTTTCTCTGATACCGCCCGCTTTTCGATTGTTTCCCGAGAAAATCTC
GCTGCGATTCTGAAGCTTTTACTGCAATCAACGCTACTTGCCGCGTCAGC
TCGTAGGCAGTGAGAATGTCGACTCCTGCAAGGAAGAGATTGATGAGGGA
TTTTAAGAGGTTACAACAAGATCCTCCGGCTGGCATTAGTGGTGCTCCTC
AGGACAACAGTATAATGCTTTGGAATGCTGTTATATTCGGGCCGGATGAT
ACCCCATGGGATGGAGGTACGTTTAAATTGACACTTCAGTTCACAGAGGA
TTATCCAAATAAGCCACCAACAGTGCGCTTTGTTTCTCGAATGTTCCATC
CAAATATTTATGCGGATGGAAGCATTTGCTTGGACATTCTACAAAATCAG
TGGAGTCCAATTTACGATGTAGCAGCAATACTCACGTCAATTCAGTCATT
GCTTTGTGACCCAAATCCAAACTCTCCTGCAAATTCGGAGGCAGCGCGGA
TGTTTAGCGAGAACAAGCGTGAATACAATAGGAGAGTACGGGAAATTGTT
GAGCAGAGTTGGACTGCTGACTAGTGGCAACTTGTTGGAATGTAGGGAAC
TTCAAAGTAGTCCAATGGCTTGTTCTAAATACAT
back to top