CX295792

Overview
NameCX295792
Unique NameCX295792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length543
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: TUR2_SPIPO (Pleiotropic drug resistance protein TUR2 OS=Spirodela polyrrhiza GN=TUR2 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.727e-30
Identity = 56/123 (45.53%), Postives = 81/123 (65.85%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            VA+TP   +A IV + F ++WN+F+GF++ R  IP+WWRWYYW  PVAW LYGLV  Q G+    +     ++   TVK F+     F+ DF+PVV +M +V+  +F  +FA++IK +NFQRR
Sbjct: 1324 VAMTPNSDIAAIVAAAFYAIWNIFAGFIIPRPRIPIWWRWYYWACPVAWTLYGLVVSQFGEYTDTM-----SDVDETVKDFLRRFLGFRHDFLPVVGVMVVVFTVLFASIFAFSIKTLNFQRR 1441          
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: AB35G_ARATH (ABC transporter G family member 35 OS=Arabidopsis thaliana GN=ABCG35 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 3.727e-30
Identity = 59/123 (47.97%), Postives = 84/123 (68.29%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            V+LTP QQVA+I  S F  ++NLFSGF + R  IP WW WYYW+ PVAW +YGL+T Q GD+E+ + +  G    +TVKQ+I+D Y F+ D++  V+ + + +   F F+FA+ IK +NFQ R
Sbjct: 1321 VSLTPNQQVASIFASAFYGIFNLFSGFFIPRPKIPKWWVWYYWICPVAWTIYGLITSQYGDVETPIALL-GGAPGLTVKQYIKDQYGFESDYMGPVAGVLVGFTVFFAFIFAFCIKTLNFQSR 1442          
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: PDR6_ORYSJ (Pleiotropic drug resistance protein 6 OS=Oryza sativa subsp. japonica GN=PDR6 PE=2 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 2.416e-29
Identity = 59/122 (48.36%), Postives = 81/122 (66.39%), Query Frame = 1
Query:    4 ALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            A+TP   VA I+ + F ++WNLF GF++ R  IP WWRWYYW +PV+W LYGL+T Q GDL+  + + DG  T  T   F+ D++ F+ DF+ VV+ M   +  +F  VFA AIK +NFQRR
Sbjct: 1330 AITPNHTVAPIIAAPFYTLWNLFCGFMIPRKRIPAWWRWYYWANPVSWTLYGLLTSQFGDLDQPLLLADGITT-TTAVDFLRDHFGFRHDFLGVVAGMVAGFCVLFAVVFALAIKYLNFQRR 1450          
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: PDR2_ORYSJ (Probable pleiotropic drug resistance protein 2 OS=Oryza sativa subsp. japonica GN=PDR2 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 4.120e-29
Identity = 57/123 (46.34%), Postives = 82/123 (66.67%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            V LTP   VA+IV S F  +WNLFSGF++ R  +P+WWRWY W+ PVAW LYGLV  Q GD+  +  + DG      VK F+E+ +DFK  ++ VV+++ + +  +F F+F +AI  +NFQ+R
Sbjct: 1348 VGLTPSYHVASIVSSAFYGIWNLFSGFIIPRPKVPIWWRWYCWICPVAWTLYGLVASQFGDI--MTPMDDGT----PVKIFVENYFDFKHSWLGVVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1464          
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: AB29G_ARATH (ABC transporter G family member 29 OS=Arabidopsis thaliana GN=ABCG29 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 2.045e-28
Identity = 54/123 (43.90%), Postives = 82/123 (66.67%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            VALTP QQVA +    F  ++NLFSGF++ R  IP WW WYYW+ PVAW +YGL+  Q GD+E  +++P G     T+K +IE++Y +  DF+  ++ + + +   F F+FA+ I+ +NFQ+R
Sbjct: 1295 VALTPNQQVAAVFAGAFYGLFNLFSGFVIPRPRIPKWWIWYYWICPVAWTVYGLIVSQYGDVEDTIKVP-GMANDPTIKWYIENHYGYDADFMIPIATVLVGFTLFFAFMFAFGIRTLNFQQR 1416          
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: PDR12_ORYSJ (Pleiotropic drug resistance protein 12 OS=Oryza sativa subsp. japonica GN=PDR12 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.731e-27
Identity = 51/123 (41.46%), Postives = 81/123 (65.85%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            VA++P  +VA I  + F S++NLFSGF + R  IP WW WYYWL P+AW +YGL+  Q GDLE ++ +P  +N   T+  ++  ++ + + F+PVV+ + +++   F F++A  IK +NFQ R
Sbjct: 1380 VAISPNHEVAAIFAAAFYSLFNLFSGFFIPRPRIPKWWIWYYWLCPLAWTVYGLIVTQYGDLEQIISVPGQSN--QTISYYVTHHFGYHRKFMPVVAPVLVLFAVFFAFMYAICIKKLNFQHR 1500          
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: PDR1_ORYSJ (Probable pleiotropic drug resistance protein 1 OS=Oryza sativa subsp. japonica GN=PDR1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.261e-27
Identity = 54/123 (43.90%), Postives = 82/123 (66.67%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            V LTP   VA+IV S F ++WNLF+GF+++R   PVWWRWY W+ PVAW LYGL+  Q GD+  +  + DG    + V  F+E+ +DFK  ++  V+++ + +  +F F+F +AI  +NFQ+R
Sbjct: 1352 VGLTPSYHVASIVSSAFYAIWNLFTGFVISRPATPVWWRWYCWICPVAWTLYGLIVSQYGDI--VTPMDDG----IPVNVFVENYFDFKHSWLGFVAVVIVAFTMLFAFLFGFAIMKLNFQKR 1468          
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: PDR7_ORYSJ (Putative pleiotropic drug resistance protein 7 OS=Oryza sativa subsp. japonica GN=PDR7 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.578e-27
Identity = 55/123 (44.72%), Postives = 78/123 (63.41%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            VA+TP   +A IV + F  +WN+F+GFL+ R  IP+WWRWY W  PVAW LYGLV  Q GD+ +   + DG      V+ +I   + F+ D++  V+   + + A+F FVFA++IK  NFQRR
Sbjct: 1327 VAMTPNSDIAAIVSTAFYCIWNIFAGFLIPRPRIPIWWRWYSWACPVAWTLYGLVASQYGDITNST-LEDGE----VVQDYIRRYFGFRHDYLGYVATAVVGFAALFAFVFAFSIKVFNFQRR 1444          
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: PDR15_ORYSJ (Pleiotropic drug resistance protein 15 OS=Oryza sativa subsp. japonica GN=PDR15 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 1.914e-26
Identity = 52/123 (42.28%), Postives = 81/123 (65.85%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            V+++P  QVA+I+ + F +++NLFSGF + R  IP WW WYYWL PVAW +YGL+  Q GD+E  + +P    +   V+ FI+D + +  DF+ VV+ +   +   F F +AY+I+ +NFQ+R
Sbjct: 1389 VSVSPNLQVASILGAAFYTLFNLFSGFFIPRPKIPKWWVWYYWLCPVAWTVYGLIVSQYGDVEDFITVP--GQSDQQVRPFIKDYFGYDPDFMGVVAAVLAGFTVFFAFTYAYSIRTLNFQQR 1509          
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: AB31G_ARATH (ABC transporter G family member 31 OS=Arabidopsis thaliana GN=ABCG31 PE=2 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.273e-26
Identity = 55/123 (44.72%), Postives = 82/123 (66.67%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            V LTP Q +A ++ S F S+WNL SGFLV +  IPVWW W+Y++ PVAW L G++  Q+GD+ES++  P  +    TVK+FIE  + +K + I V + + + + A+F   FA ++K +NFQRR
Sbjct: 1307 VGLTPNQHLAAVISSAFYSLWNLLSGFLVQKPLIPVWWIWFYYICPVAWTLQGVILSQLGDVESMINEPLFHG---TVKEFIEYYFGYKPNMIGVSAAVLVGFCALFFSAFALSVKYLNFQRR 1426          
The following BLAST results are available for this feature:
BLAST of CX295792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
TUR2_SPIPO3.727e-3045.53Pleiotropic drug resistance protein TUR2 OS=Spirod... [more]
AB35G_ARATH3.727e-3047.97ABC transporter G family member 35 OS=Arabidopsis ... [more]
PDR6_ORYSJ2.416e-2948.36Pleiotropic drug resistance protein 6 OS=Oryza sat... [more]
PDR2_ORYSJ4.120e-2946.34Probable pleiotropic drug resistance protein 2 OS=... [more]
AB29G_ARATH2.045e-2843.90ABC transporter G family member 29 OS=Arabidopsis ... [more]
PDR12_ORYSJ1.731e-2741.46Pleiotropic drug resistance protein 12 OS=Oryza sa... [more]
PDR1_ORYSJ2.261e-2743.90Probable pleiotropic drug resistance protein 1 OS=... [more]
PDR7_ORYSJ6.578e-2744.72Putative pleiotropic drug resistance protein 7 OS=... [more]
PDR15_ORYSJ1.914e-2642.28Pleiotropic drug resistance protein 15 OS=Oryza sa... [more]
AB31G_ARATH7.273e-2644.72ABC transporter G family member 31 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC05075H11SK DroRLeaf1 Citrus clementina cDNA clone C05075H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295792 ID=CX295792; Name=CX295792; organism=Citrus clementina; type=EST; length=543bp
GTCGCATTGACTCCTGGCCAGCAAGTTGCTACCATTGTCTTGTCCTTCTT
CCTTAGTGTATGGAACTTGTTCTCCGGTTTCCTCGTTGCCAGATCGGATA
TTCCTGTCTGGTGGAGGTGGTACTACTGGCTTTCTCCGGTGGCTTGGAAT
CTGTATGGCCTTGTGACTTGTCAAGTTGGTGACTTAGAGTCACTTGTGGA
GATTCCTGATGGTAATAATACTAAAATGACAGTGAAGCAATTCATCGAAG
ATAATTATGATTTCAAGAAAGATTTCATTCCTGTCGTTAGTATCATGCAT
ATTGTCTGGATGGCTGTGTTCTTGTTTGTGTTTGCCTATGCCATCAAGGC
CATCAACTTCCAAAGGAGATAAACCAGCTTAAATCTTAAGAATGGTAGAC
CTAAGTGAGCATGTGGGAAACAAAAGGTTACCACATTTTTTTTTTTCTTT
TGTACTTCCTTTTTCTTGTTTAGTAATTGACTGTGATATAAATGTATGTT
TGTAATGTACTTTGTTCAATAAGAATGCAAGTATTTTTTTGAC
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