CX295792

Overview
NameCX295792
Unique NameCX295792
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length543
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSJ (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. japonica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.499e-26
Identity = 55/123 (44.72%), Postives = 78/123 (63.41%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            V LTP   +A+IV S F ++WNLFSGF++ R  +P+WWRWY W  PVAW LYGLV  Q GD+E+ +E  DG      VK F+E+ + FK  ++  V+ +   +  +F  +F +AI   NFQ+R
Sbjct: 1341 VGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIETPME--DGT----PVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457          
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: PDR3_ORYSI (Pleiotropic drug resistance protein 3 OS=Oryza sativa subsp. indica GN=PDR3 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 9.499e-26
Identity = 55/123 (44.72%), Postives = 78/123 (63.41%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            V LTP   +A+IV S F ++WNLFSGF++ R  +P+WWRWY W  PVAW LYGLV  Q GD+E+ +E  DG      VK F+E+ + FK  ++  V+ +   +  +F  +F +AI   NFQ+R
Sbjct: 1341 VGLTPNYHIASIVSSAFYAIWNLFSGFVIPRPRVPIWWRWYCWACPVAWTLYGLVVSQFGDIETPME--DGT----PVKVFVENYFGFKHSWLGWVATVVAAFAFLFASLFGFAIMKFNFQKR 1457          
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: PDR13_ORYSJ (Pleiotropic drug resistance protein 13 OS=Oryza sativa subsp. japonica GN=PDR13 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.526e-23
Identity = 51/124 (41.13%), Postives = 78/124 (62.90%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIP--DGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQR 366
            V LTP Q +A++V S F S+WNL SGFL+ +S IP WW W+Y++ PVAW L G++T Q+GD+++ +  P  DG     TV +F++ N  F++        + + +   F  ++A +IK INFQR
Sbjct: 1322 VGLTPTQHMASVVSSAFYSLWNLLSGFLIPQSRIPGWWIWFYYICPVAWTLRGVITSQLGDVDTRIVGPGFDG-----TVHEFLQQNLGFEQGMTGATVAVLVAFSVFFFSIYAISIKMINFQR 1440          
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: PDR3_TOBAC (Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum GN=PDR3 PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.190e-22
Identity = 49/123 (39.84%), Postives = 79/123 (64.23%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            V++TP   VA I+ S F +++NLF+GFL+ ++ IP WW W+Y+L+P +W L G++T Q GD+E  + +      K TV  F+ D + F  + +P+V+ + I +  VF  +FA+ I  +NFQRR
Sbjct: 1328 VSMTPSFPVAAILQSSFYTMFNLFAGFLMPKAQIPKWWIWFYYLTPTSWTLNGMLTSQYGDIEKEITV---FQEKKTVAAFLGDYFGFHHNQLPIVAFVLIAYPLVFASLFAFFIGKLNFQRR 1447          
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: AB38G_ARATH (ABC transporter G family member 38 OS=Arabidopsis thaliana GN=ABCG38 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.566e-20
Identity = 43/123 (34.96%), Postives = 80/123 (65.04%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            ++++P Q++A+I+     + WN+FSGF + R  + VW RW+ ++ P  W LYGL   Q GD+E+ ++      T  TV +F+++ Y ++ +F+ VVS+  I +   F+F++A+++K +NFQ+R
Sbjct: 1302 ISVSPNQEIASILNGVISTSWNVFSGFTIPRPRMHVWLRWFTYVCPGWWGLYGLTIAQYGDVETRLD------TGETVVEFMKNYYGYEYNFLWVVSLTLIAFSMFFVFIYAFSVKILNFQKR 1418          
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: AB37G_ARATH (ABC transporter G family member 37 OS=Arabidopsis thaliana GN=ABCG37 PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.566e-20
Identity = 45/123 (36.59%), Postives = 75/123 (60.98%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            V++TP   VA I+ S F   +NLFSGFL+ ++ +P WW W Y+L+P +W L G ++ Q GD+   + +  G +T  TV +F++D + F  D + V +++ I +      +FA+ +  +NFQRR
Sbjct: 1331 VSITPNFMVAAILQSLFYVGFNLFSGFLIPQTQVPGWWIWLYYLTPTSWTLNGFISSQYGDIHEEINV-FGQST--TVARFLKDYFGFHHDLLAVTAVVQIAFPIALASMFAFFVGKLNFQRR 1450          
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: AB41G_ARATH (ABC transporter G family member 41 OS=Arabidopsis thaliana GN=ABCG41 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 1.735e-19
Identity = 46/123 (37.40%), Postives = 75/123 (60.98%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            VALTP   +A  + S F S+ NLF+GF++ +  IP WW W Y+LSP +W L GL++ Q GD+E  + +      K +V  F+ED + +K D + VV+ + I +  +   +FA+ +  +NFQ++
Sbjct: 1278 VALTPNIHMALTLRSTFFSMVNLFAGFVMPKQKIPKWWIWMYYLSPTSWVLEGLLSSQYGDVEKEITV---FGEKKSVSAFLEDYFGYKHDSLAVVAFVLIAFPIIVASLFAFFMSKLNFQKK 1397          
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: AB30G_ARATH (ABC transporter G family member 30 OS=Arabidopsis thaliana GN=ABCG30 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 3.272e-18
Identity = 43/123 (34.96%), Postives = 74/123 (60.16%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            VALTP   +A  + S F S+ NLF+GF++ +  IP WW W Y+LSP +W L GL++ Q GD++  + +      K  V  F+ED + +K + + VV+ + I +  +   +FA+ +  ++FQ++
Sbjct: 1281 VALTPNIHMAVTLRSSFFSMLNLFAGFVIPKQKIPKWWIWMYYLSPTSWVLEGLLSSQYGDVDKEILV---FGEKKRVSAFLEDYFGYKHESLAVVAFVLIAYPIIVATLFAFFMSKLSFQKK 1400          
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: AB42G_ARATH (ABC transporter G family member 42 OS=Arabidopsis thaliana GN=ABCG42 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.290e-18
Identity = 43/123 (34.96%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            V +TP   +A  + S F ++ NLF+G+++ + +IP WW W Y+LSP +W L GL+T Q GD+E  + +  G   K  V  F+ED + ++ D + +V+++ I +  +   +FA+ I  +NFQ++
Sbjct: 1273 VVVTPNVHIAFTLRSSFYAIVNLFAGYVMPKPNIPRWWIWMYYLSPTSWVLNGLLTSQYGDMEKEI-LAFGEKKK--VSDFLEDYFGYRYDSLALVAVVLIAFPILLASLFAFFIGKLNFQKK 1392          
BLAST of CX295792 vs. ExPASy Swiss-Prot
Match: AB43G_ARATH (ABC transporter G family member 43 OS=Arabidopsis thaliana GN=ABCG43 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 9.521e-18
Identity = 43/123 (34.96%), Postives = 76/123 (61.79%), Query Frame = 1
Query:    1 VALTPGQQVATIVLSFFLSVWNLFSGFLVARSDIPVWWRWYYWLSPVAWNLYGLVTCQVGDLESLVEIPDGNNTKMTVKQFIEDNYDFKKDFIPVVSIMHIVWMAVFLFVFAYAIKAINFQRR 369
            V +TP   +A  + S F ++ NLF+G+++ + +IP WW W Y+LSP +W L GL+T Q GD+E  + +  G   K  V  F+ED + ++ D + +V+++ I +  +   +FA+ I  +NFQ++
Sbjct: 1271 VVVTPNVHIAFTLRSSFYAIVNLFAGYVMPKPNIPRWWIWMYYLSPTSWVLNGLLTSQYGDMEKEI-LAFGEKKK--VSAFLEDYFGYRYDSLALVAVVLIAFPILLASLFAFFIGKLNFQKK 1390          
The following BLAST results are available for this feature:
BLAST of CX295792 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PDR3_ORYSJ9.499e-2644.72Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR3_ORYSI9.499e-2644.72Pleiotropic drug resistance protein 3 OS=Oryza sat... [more]
PDR13_ORYSJ7.526e-2341.13Pleiotropic drug resistance protein 13 OS=Oryza sa... [more]
PDR3_TOBAC2.190e-2239.84Pleiotropic drug resistance protein 3 OS=Nicotiana... [more]
AB38G_ARATH4.566e-2034.96ABC transporter G family member 38 OS=Arabidopsis ... [more]
AB37G_ARATH4.566e-2036.59ABC transporter G family member 37 OS=Arabidopsis ... [more]
AB41G_ARATH1.735e-1937.40ABC transporter G family member 41 OS=Arabidopsis ... [more]
AB30G_ARATH3.272e-1834.96ABC transporter G family member 30 OS=Arabidopsis ... [more]
AB42G_ARATH7.290e-1834.96ABC transporter G family member 42 OS=Arabidopsis ... [more]
AB43G_ARATH9.521e-1834.96ABC transporter G family member 43 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC05075H11SK DroRLeaf1 Citrus clementina cDNA clone C05075H11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295792 ID=CX295792; Name=CX295792; organism=Citrus clementina; type=EST; length=543bp
GTCGCATTGACTCCTGGCCAGCAAGTTGCTACCATTGTCTTGTCCTTCTT
CCTTAGTGTATGGAACTTGTTCTCCGGTTTCCTCGTTGCCAGATCGGATA
TTCCTGTCTGGTGGAGGTGGTACTACTGGCTTTCTCCGGTGGCTTGGAAT
CTGTATGGCCTTGTGACTTGTCAAGTTGGTGACTTAGAGTCACTTGTGGA
GATTCCTGATGGTAATAATACTAAAATGACAGTGAAGCAATTCATCGAAG
ATAATTATGATTTCAAGAAAGATTTCATTCCTGTCGTTAGTATCATGCAT
ATTGTCTGGATGGCTGTGTTCTTGTTTGTGTTTGCCTATGCCATCAAGGC
CATCAACTTCCAAAGGAGATAAACCAGCTTAAATCTTAAGAATGGTAGAC
CTAAGTGAGCATGTGGGAAACAAAAGGTTACCACATTTTTTTTTTTCTTT
TGTACTTCCTTTTTCTTGTTTAGTAATTGACTGTGATATAAATGTATGTT
TGTAATGTACTTTGTTCAATAAGAATGCAAGTATTTTTTTGAC
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