CX295802

Overview
NameCX295802
Unique NameCX295802
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length719
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10984 contig Ccv1_Contig10984:103..821. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295802 vs. ExPASy Swiss-Prot
Match: YCEI_BACSU (Putative metabolite transport protein yceI OS=Bacillus subtilis GN=yceI PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.217e-13
Identity = 51/167 (30.54%), Postives = 84/167 (50.30%), Query Frame = 3
Query:  117 IAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGAKKPGTLPPNVSAAVNGVALCGTLAGQLFFGWLGDKLGRKKVYGITLILMVISSIASGLSFGKSAKGVIATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGIVALIVSSAFDHQ 617
            +AG+G+  DA D+  +S +   L     HV+       L P     +  V   G  AG   FG L D++GRKKV+ ITL+     SI SG+S   ++   ++     RF +G G+GG+ P+++T++SE    + RG  I  + +    G L+  +++  V  +F  Q
Sbjct:   15 VAGLGWLFDAMDVGILSFIIAAL-----HVEW-----NLSPEEMKWIGSVNSIGMAAGAFLFGLLADRIGRKKVFIITLLCF---SIGSGISAFVTS---LSAFLILRFVIGMGLGGELPVASTLVSEAVVPEKRGRVIVLLESFWAVGWLAAALISYFVIPSFGWQ 165          
BLAST of CX295802 vs. ExPASy Swiss-Prot
Match: PROP_ECOLI (Proline/betaine transporter OS=Escherichia coli (strain K12) GN=proP PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 61/216 (28.24%), Postives = 96/216 (44.44%), Query Frame = 3
Query:  108 AIVIAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGAKKPGTLPPNVSAAVNGVALCGTLA--------GQLFFGWLGDKLGRKKVYGITLILMVISSIASGLSFGKSAKGVIA--TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVF---AMQGFGILSGGIVALIVSSAFDHQFKAPPYSVDPVGSTAPEADYVWRIVLMVGALPL 716
            AI  A +G   + +D      V   LG++++            P    +V  VA   T +        G LFFG LGDK GR+K+  IT+++M IS+   GL       G+ A   L   +   GF +GG+Y  ++  ++EY+  + RG F+ +     ++ GF +L  G+V LI +   +  F                 D+ WRI   + ALPL
Sbjct:   26 AITAASLGNAMEWFDFGVYGFVAYALGKVFF------------PGADPSVQMVAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYDTIGIWAPILLLICKMAQGFSVGGEYTGASIFVAEYSPDRKRG-FMGSWLDFGSIAGF-VLGAGVVVLISTIVGEANF----------------LDWGWRIPFFI-ALPL 210          
BLAST of CX295802 vs. ExPASy Swiss-Prot
Match: PROP_ECO57 (Proline/betaine transporter OS=Escherichia coli O157:H7 GN=proP PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.306e-11
Identity = 61/216 (28.24%), Postives = 96/216 (44.44%), Query Frame = 3
Query:  108 AIVIAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGAKKPGTLPPNVSAAVNGVALCGTLA--------GQLFFGWLGDKLGRKKVYGITLILMVISSIASGLSFGKSAKGVIA--TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVF---AMQGFGILSGGIVALIVSSAFDHQFKAPPYSVDPVGSTAPEADYVWRIVLMVGALPL 716
            AI  A +G   + +D      V   LG++++            P    +V  VA   T +        G LFFG LGDK GR+K+  IT+++M IS+   GL       G+ A   L   +   GF +GG+Y  ++  ++EY+  + RG F+ +     ++ GF +L  G+V LI +   +  F                 D+ WRI   + ALPL
Sbjct:   26 AITAASLGNAMEWFDFGVYGFVAYALGKVFF------------PGADPSVQMVAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYDTIGIWAPILLLICKMAQGFSVGGEYTGASIFVAEYSPDRKRG-FMGSWLDFGSIAGF-VLGAGVVVLISTIVGEANF----------------LDWGWRIPFFI-ALPL 210          
BLAST of CX295802 vs. ExPASy Swiss-Prot
Match: YGCS_ECOLI (Inner membrane metabolite transport protein ygcS OS=Escherichia coli (strain K12) GN=ygcS PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 3.011e-11
Identity = 50/180 (27.78%), Postives = 85/180 (47.22%), Query Frame = 3
Query:  180 LLGRIYYHVDGAKKPGTLPPNVSAAVNGVALCGTLAGQLFFGWLGDKLGRKKVYGITLILMVISSIASGLSFGKSAKGVIATLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVFAMQGFGILSGGIVALIVSSAFDHQFKAPPYSVDPVGSTAPEADYVWRIVLMVGALPLL 719
            +LG I Y +        L P ++  + G AL G   G L  GW+ D +GR+K++  + +L+ ++S      F  + + +I      R  +G G+GGDY +  T+++E++ ++ RG  + A      F ++    V  +++S   H F           S  PEA   WR +L   ALP L
Sbjct:   34 VLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQ--FFATTPEHLIG----LRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGA------FSVV--WTVGYVLASIAGHHFI----------SENPEA---WRWLLASAALPAL 186          
BLAST of CX295802 vs. ExPASy Swiss-Prot
Match: PROP_SALTY (Proline/betaine transporter OS=Salmonella typhimurium GN=proP PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.933e-11
Identity = 59/216 (27.31%), Postives = 97/216 (44.91%), Query Frame = 3
Query:  108 AIVIAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGAKKPGTLPPNVSAAVNGVALCGTLA--------GQLFFGWLGDKLGRKKVYGITLILMVISSIASGLSFGKSAKGVIA--TLCFFRFWLGFGIGGDYPLSATIMSEYANKKTRGAFIAAVF---AMQGFGILSGGIVALIVSSAFDHQFKAPPYSVDPVGSTAPEADYVWRIVLMVGALPL 716
            AI  A +G   + +D      V   LG++++            P    +V  +A   T +        G LFFG LGDK GR+K+  IT+++M IS+   GL    +  G+ A   L   +   GF +GG+Y  ++  ++EY+  + RG F+ +     ++ GF +L  G+V LI +   +  F                 ++ WRI   + ALPL
Sbjct:   26 AITAASLGNAMEWFDFGVYGFVAYALGKVFF------------PGADPSVQMIAALATFSVPFLIRPLGGLFFGMLGDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRG-FMGSWLDFGSIAGF-VLGAGVVVLISTIVGEENF----------------LEWGWRIPFFI-ALPL 210          
The following BLAST results are available for this feature:
BLAST of CX295802 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
YCEI_BACSU3.217e-1330.54Putative metabolite transport protein yceI OS=Baci... [more]
PROP_ECOLI2.306e-1128.24Proline/betaine transporter OS=Escherichia coli (s... [more]
PROP_ECO572.306e-1128.24Proline/betaine transporter OS=Escherichia coli O1... [more]
YGCS_ECOLI3.011e-1127.78Inner membrane metabolite transport protein ygcS O... [more]
PROP_SALTY3.933e-1127.31Proline/betaine transporter OS=Salmonella typhimur... [more]

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Properties
Property NameValue
Genbank descriptionC05076A09SK DroRLeaf1 Citrus clementina cDNA clone C05076A09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295802 ID=CX295802; Name=CX295802; organism=Citrus clementina; type=EST; length=719bp
CAGGAAAGAAGGCATAGTATCTAGCATTCTAGCTAGCCATGGCTGGAGAT
CAACTGACAGTGCTTAATGCACTTGATGTAGCAAAGACTCAATTGTACCA
TTTCACAGCAATTGTAATTGCTGGAATGGGATTCTTCACAGATGCATACG
ACTTGTTTTGCATCTCCTTGGTCACGAAGTTACTCGGTCGCATCTACTAC
CACGTCGATGGTGCAAAAAAGCCCGGTACATTGCCTCCCAACGTGTCAGC
TGCTGTAAACGGCGTCGCGTTGTGTGGTACTTTAGCCGGCCAGCTCTTCT
TCGGATGGCTTGGCGACAAATTAGGCCGCAAAAAAGTTTACGGGATAACA
CTAATCCTCATGGTCATCAGCTCAATTGCCTCCGGACTTTCCTTCGGAAA
ATCCGCAAAGGGTGTCATTGCAACTCTTTGCTTTTTCAGGTTTTGGCTTG
GTTTCGGTATTGGTGGTGACTATCCGCTATCAGCTACAATTATGTCTGAA
TACGCAAACAAGAAGACTCGCGGTGCTTTCATTGCTGCGGTGTTCGCTAT
GCAAGGATTTGGGATTTTATCTGGAGGGATTGTGGCTCTAATAGTTTCAT
CAGCGTTTGATCATCAATTCAAGGCCCCTCCGTACTCAGTTGATCCTGTG
GGCTCAACGGCGCCAGAAGCTGACTACGTGTGGCGAATTGTTTTGATGGT
TGGTGCTCTCCCGCTGCTC
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