CX295808

Overview
NameCX295808
Unique NameCX295808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295808 vs. ExPASy Swiss-Prot
Match: PHB2_CHICK (Prohibitin-2 OS=Gallus gallus GN=PHB2 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 7.231e-42
Identity = 88/145 (60.69%), Postives = 109/145 (75.17%), Query Frame = 3
Query:  273 YAATHSLYNVEGGHRAIMFNRIVGVK-DKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFTLL 704
            Y    S++ VEGG RAI FNRI GV+ D +  EG H  IPWF+ P+IYD+RARP  + S TGS DLQMV I LRVLTRP A +LP++Y+ LG +Y ERVLPSI++E LK+VVA++NASQLITQR  VS  IR+ LTERA  F+L+
Sbjct:   34 YGVRESVFIVEGGQRAIFFNRIGGVQQDTILAEGLHFRIPWFQYPIIYDIRARPRKISSPTGSKDLQMVNISLRVLTRPNAAELPSMYQRLGLDYEERVLPSIVNEVLKSVVAKFNASQLITQRAQVSLLIRRELTERAKDFSLI 178          
BLAST of CX295808 vs. ExPASy Swiss-Prot
Match: L2CC_DROME (Protein l(2)37Cc OS=Drosophila melanogaster GN=l(2)37Cc PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 1.044e-40
Identity = 80/136 (58.82%), Postives = 103/136 (75.74%), Query Frame = 3
Query:  288 SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYF 695
            +LYNVEGGHRA++F+R  G+K+ V  EGTH  IPW +RP+I+D+R++P  V   TGS DLQ V I LR+L RP+ DQLP IY  LG++Y+ERVLPSI  E LKAVVAQ++A +LITQRE VS+ + + LT RA  F
Sbjct:   26 ALYNVEGGHRAVIFDRFTGIKENVVGEGTHFFIPWVQRPIIFDIRSQPRNVPVITGSKDLQNVNITLRILYRPIPDQLPKIYTILGQDYDERVLPSIAPEVLKAVVAQFDAGELITQREMVSQRVSQELTVRAKQF 161          
BLAST of CX295808 vs. ExPASy Swiss-Prot
Match: PHB_RAT (Prohibitin OS=Rattus norvegicus GN=Phb PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.364e-40
Identity = 82/139 (58.99%), Postives = 107/139 (76.98%), Query Frame = 3
Query:  288 SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFTLL 704
            +LYNV+ GHRA++F+R  GV+D V  EGTH +IPW ++P+I+D R+RP  V   TGS DLQ V I LR+L RPVA QLP IY ++GE+Y+ERVLPSI  E LK+VVA+++A +LITQRE VSR++   LTERAA F L+
Sbjct:   26 ALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIYTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLI 164          
BLAST of CX295808 vs. ExPASy Swiss-Prot
Match: PHB_MOUSE (Prohibitin OS=Mus musculus GN=Phb PE=1 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.364e-40
Identity = 82/139 (58.99%), Postives = 107/139 (76.98%), Query Frame = 3
Query:  288 SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFTLL 704
            +LYNV+ GHRA++F+R  GV+D V  EGTH +IPW ++P+I+D R+RP  V   TGS DLQ V I LR+L RPVA QLP IY ++GE+Y+ERVLPSI  E LK+VVA+++A +LITQRE VSR++   LTERAA F L+
Sbjct:   26 ALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIYTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLI 164          
BLAST of CX295808 vs. ExPASy Swiss-Prot
Match: PHB_HUMAN (Prohibitin OS=Homo sapiens GN=PHB PE=1 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.968e-40
Identity = 81/139 (58.27%), Postives = 107/139 (76.98%), Query Frame = 3
Query:  288 SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFTLL 704
            +LYNV+ GHRA++F+R  GV+D V  EGTH +IPW ++P+I+D R+RP  V   TGS DLQ V I LR+L RPVA QLP I+ ++GE+Y+ERVLPSI  E LK+VVA+++A +LITQRE VSR++   LTERAA F L+
Sbjct:   26 ALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLI 164          
BLAST of CX295808 vs. ExPASy Swiss-Prot
Match: PHB_BOVIN (Prohibitin OS=Bos taurus GN=PHB PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.968e-40
Identity = 81/139 (58.27%), Postives = 107/139 (76.98%), Query Frame = 3
Query:  288 SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFTLL 704
            +LYNV+ GHRA++F+R  GV+D V  EGTH +IPW ++P+I+D R+RP  V   TGS DLQ V I LR+L RPVA QLP I+ ++GE+Y+ERVLPSI  E LK+VVA+++A +LITQRE VSR++   LTERAA F L+
Sbjct:   26 ALYNVDAGHRAVIFDRFRGVQDIVVGEGTHFLIPWVQKPIIFDCRSRPRNVPVITGSKDLQNVNITLRILFRPVASQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSDDLTERAATFGLI 164          
BLAST of CX295808 vs. ExPASy Swiss-Prot
Match: PHB_CHICK (Prohibitin OS=Gallus gallus GN=PHB PE=1 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 8.839e-40
Identity = 79/139 (56.83%), Postives = 107/139 (76.98%), Query Frame = 3
Query:  288 SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFTLL 704
            +LYNV+ GHRA++F+R  GV+D V  EGTH +IPW ++P+I+D R+RP  +   TGS DLQ V I LR+L RPV  QLP I+ ++GE+Y+ERVLPSI  E LK+VVA+++A +LITQRE VSR++ + LTERAA F L+
Sbjct:   26 ALYNVDAGHRAVIFDRFRGVQDTVVGEGTHFLIPWVQKPIIFDCRSRPRNIPVITGSKDLQNVNITLRILFRPVTAQLPRIFTSIGEDYDERVLPSITTEILKSVVARFDAGELITQRELVSRQVSEDLTERAATFGLI 164          
BLAST of CX295808 vs. ExPASy Swiss-Prot
Match: PHB1_DICDI (Prohibitin-1, mitochondrial OS=Dictyostelium discoideum GN=phbA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 7.483e-39
Identity = 76/142 (53.52%), Postives = 109/142 (76.76%), Query Frame = 3
Query:  279 ATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFTLL 704
            A  S+Y V+GG RA++F+RI GVK+K   EGTH ++PW ++P+I+D+R+ P  ++S TGS DLQ V + +RVL RP  + LP+I+  LG +Y+ER+LPS+ +E LK+VVAQY+A++LITQRE VS+EIR+ L +RA  F LL
Sbjct:   22 AQSSMYTVDGGQRAVIFDRISGVKEKSVGEGTHFIMPWLQKPIIFDIRSSPRNIKSDTGSKDLQTVSVTVRVLFRPDVEHLPSIFSKLGLDYDERILPSLGNEVLKSVVAQYDATELITQREVVSKEIRESLMKRAKEFNLL 163          
BLAST of CX295808 vs. ExPASy Swiss-Prot
Match: PHB1_CAEEL (Mitochondrial prohibitin complex protein 1 OS=Caenorhabditis elegans GN=phb-1 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.667e-38
Identity = 79/142 (55.63%), Postives = 104/142 (73.24%), Query Frame = 3
Query:  279 ATHSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYFTLL 704
            A  +LYNV+GG RA++F+R  GVK++V  EGTH +IPW ++P+I+D+R+ P  V + TGS DLQ V I LR+L RP  D+LP IY  +G +Y ERVLPSI +E LKAVVAQ++A ++ITQRE VS+     L ERAA F LL
Sbjct:   26 AQTALYNVDGGQRAVIFDRFSGVKNEVVGEGTHFLIPWVQKPIIFDIRSTPRAVTTITGSKDLQNVNITLRILHRPSPDRLPNIYLNIGLDYAERVLPSITNEVLKAVVAQFDAHEMITQREVVSQRASVALRERAAQFGLL 167          
BLAST of CX295808 vs. ExPASy Swiss-Prot
Match: PHB1_SCHPO (Prohibitin-1 OS=Schizosaccharomyces pombe GN=phb1 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 6.335e-38
Identity = 76/136 (55.88%), Postives = 104/136 (76.47%), Query Frame = 3
Query:  288 SLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYF 695
            S+Y+V GG RA++F+R+ GV+ +V  EGTH +IPW ++ ++YDVR RP  + +TTGS DLQMV + LRVL RP    LP IY+ LG +Y+ERVLPSI +E LK+VVAQ++A++LITQRE VS +IR+ L +RA  F
Sbjct:   25 SIYDVPGGKRAVLFDRLSGVQKQVVQEGTHFLIPWLQKAIVYDVRTRPRNIATTTGSKDLQMVSLTLRVLHRPEVGMLPQIYQNLGLDYDERVLPSIGNEILKSVVAQFDAAELITQREVVSAKIRQELVQRATEF 160          
The following BLAST results are available for this feature:
BLAST of CX295808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PHB2_CHICK7.231e-4260.69Prohibitin-2 OS=Gallus gallus GN=PHB2 PE=2 SV=1[more]
L2CC_DROME1.044e-4058.82Protein l(2)37Cc OS=Drosophila melanogaster GN=l(2... [more]
PHB_RAT1.364e-4058.99Prohibitin OS=Rattus norvegicus GN=Phb PE=1 SV=1[more]
PHB_MOUSE1.364e-4058.99Prohibitin OS=Mus musculus GN=Phb PE=1 SV=1[more]
PHB_HUMAN3.968e-4058.27Prohibitin OS=Homo sapiens GN=PHB PE=1 SV=1[more]
PHB_BOVIN3.968e-4058.27Prohibitin OS=Bos taurus GN=PHB PE=2 SV=1[more]
PHB_CHICK8.839e-4056.83Prohibitin OS=Gallus gallus GN=PHB PE=1 SV=1[more]
PHB1_DICDI7.483e-3953.52Prohibitin-1, mitochondrial OS=Dictyostelium disco... [more]
PHB1_CAEEL1.667e-3855.63Mitochondrial prohibitin complex protein 1 OS=Caen... [more]
PHB1_SCHPO6.335e-3855.88Prohibitin-1 OS=Schizosaccharomyces pombe GN=phb1 ... [more]

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Properties
Property NameValue
Genbank descriptionC05076B03SK DroRLeaf1 Citrus clementina cDNA clone C05076B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295808 ID=CX295808; Name=CX295808; organism=Citrus clementina; type=EST; length=715bp
TGTTTTGCTCGTAACATATTGTCACTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTATATATATATATATATATATGAGTTGAGTTCTTTGATATTGAGT
TTGTTGCTATTCTTGAATTGGGAGTTTTGTATTTGTTGTGGTTTTTTTCT
ACTGACTACATACCACCGCTTAGGAAAAAATGAACTTCAACAATGTCAAA
GTTCCCAAGATGCCGGGTGGTGGCGCAGTCTCTGCTCTAATTAAGGTGGG
GGTTATTGGTGGGCTTGGTTTGTACGCTGCTACTCATAGTCTCTACAATG
TCGAGGGAGGGCATAGGGCCATTATGTTCAACCGCATAGTTGGTGTCAAA
GATAAGGTTTATCCCGAGGGGACGCATCTTATGATTCCATGGTTTGAGAG
GCCTGTCATCTATGATGTTCGTGCACGACCCAACTTAGTGGAGAGTACTA
CTGGTAGCCATGATCTTCAGATGGTTAAGATTGGGCTTAGGGTGCTCACT
CGTCCTGTGGCTGACCAGTTGCCTACAATTTATCGAACCCTTGGTGAGAA
CTACAATGAAAGGGTTCTGCCTTCTATCATTCATGAAACTTTAAAAGCTG
TGGTTGCTCAGTACAATGCCAGCCAGCTTATCACACAGCGTGAGACTGTA
AGTAGGGAAATTCGGAAGATTCTGACTGAGAGGGCAGCCTATTTCACATT
GCTCTGGATGATGTC
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