CX295808

Overview
NameCX295808
Unique NameCX295808
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length715
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295808_ssr25 microsatellite CX295808_ssr25:25..56. BLAST: Citrus ESTs to Prunus persica proteins V1
CX295808_ssr57 microsatellite CX295808_ssr57:57..76. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig672 contig Ccv1_Contig672:1..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX295808 vs. ExPASy Swiss-Prot
Match: PHB1_YEAST (Prohibitin-1 OS=Saccharomyces cerevisiae GN=PHB1 PE=1 SV=2)

HSP 1 Score: 156.377 bits (394), Expect = 1.411e-37
Identity = 74/137 (54.01%), Postives = 106/137 (77.37%), Query Frame = 3 
Query:  285 HSLYNVEGGHRAIMFNRIVGVKDKVYPEGTHLMIPWFERPVIYDVRARPNLVESTTGSHDLQMVKIGLRVLTRPVADQLPTIYRTLGENYNERVLPSIIHETLKAVVAQYNASQLITQRETVSREIRKILTERAAYF 695
            +S+Y+V+GG R ++F+RI GVK +V  EGTH ++PW ++ +IYDVR +P  + + TG+ DLQMV + LRVL RP   QLP IY+ LG +Y+ERVLPSI +E LK++VAQ++A++LITQRE +S++IRK L+ RA  F
Sbjct:   27 YSMYDVKGGSRGVIFDRINGVKQQVVGEGTHFLVPWLQKAIIYDVRTKPKSIATNTGTKDLQMVSLTLRVLHRPEVLQLPAIYQNLGLDYDERVLPSIGNEVLKSIVAQFDAAELITQREIISQKIRKELSTRANEF 163
The following BLAST results are available for this feature:
BLAST of CX295808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
PHB1_YEAST1.411e-3754.01Prohibitin-1 OS=Saccharomyces cerevisiae GN=PHB1 P... [more]

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Properties
Property NameValue
Genbank descriptionC05076B03SK DroRLeaf1 Citrus clementina cDNA clone C05076B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295808 ID=CX295808; Name=CX295808; organism=Citrus clementina; type=EST; length=715bp
TGTTTTGCTCGTAACATATTGTCACTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTATATATATATATATATATATGAGTTGAGTTCTTTGATATTGAGT
TTGTTGCTATTCTTGAATTGGGAGTTTTGTATTTGTTGTGGTTTTTTTCT
ACTGACTACATACCACCGCTTAGGAAAAAATGAACTTCAACAATGTCAAA
GTTCCCAAGATGCCGGGTGGTGGCGCAGTCTCTGCTCTAATTAAGGTGGG
GGTTATTGGTGGGCTTGGTTTGTACGCTGCTACTCATAGTCTCTACAATG
TCGAGGGAGGGCATAGGGCCATTATGTTCAACCGCATAGTTGGTGTCAAA
GATAAGGTTTATCCCGAGGGGACGCATCTTATGATTCCATGGTTTGAGAG
GCCTGTCATCTATGATGTTCGTGCACGACCCAACTTAGTGGAGAGTACTA
CTGGTAGCCATGATCTTCAGATGGTTAAGATTGGGCTTAGGGTGCTCACT
CGTCCTGTGGCTGACCAGTTGCCTACAATTTATCGAACCCTTGGTGAGAA
CTACAATGAAAGGGTTCTGCCTTCTATCATTCATGAAACTTTAAAAGCTG
TGGTTGCTCAGTACAATGCCAGCCAGCTTATCACACAGCGTGAGACTGTA
AGTAGGGAAATTCGGAAGATTCTGACTGAGAGGGCAGCCTATTTCACATT
GCTCTGGATGATGTC
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