CX295820

Overview
NameCX295820
Unique NameCX295820
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length615
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX295820 vs. ExPASy Swiss-Prot
Match: DFRA_ANTMA (Dihydroflavonol-4-reductase OS=Antirrhinum majus GN=DFRA PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.951e-11
Identity = 49/161 (30.43%), Postives = 83/161 (51.55%), Query Frame = 1 
Query:  118 ATKTVCVMDASGHFASALVRRLLLRGYTVHAALHNHGKLQCIEGELINYNEEKKLKVFQADPFDYHSLVNALKGCSGLFY---SFEPPSDHSTYDELTAEVETMAAHNVLEACAQTNTVDKVVFTSSLTAVVWSNHRDNPTSHDFDERNWSDVNLCKKFKL 591
            ++ TVCV  A+G   S LV RLL RGYTV A + + G ++ ++  +     +  L +++AD     S   A++GC G+F+   S E  S     + +   ++ M   N++++C Q  TV K +FT+S   V    H+  P    +DE + SD++     K+
Sbjct:   16 SSTTVCVTGAAGFIGSWLVMRLLERGYTVRATVRDPGNMKKVKHLIELPKADTNLTLWKADMTVEGSFDEAIQGCEGVFHLATSMEFDSVDPENEVIKPTIDGML--NIIKSCVQAKTVKKFIFTTSGGTVNVEEHQ-KPV---YDETDSSDMDFINSKKM 170
The following BLAST results are available for this feature:
BLAST of CX295820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
DFRA_ANTMA2.951e-1130.43Dihydroflavonol-4-reductase OS=Antirrhinum majus G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05076C03SK DroRLeaf1 Citrus clementina cDNA clone C05076C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295820 ID=CX295820; Name=CX295820; organism=Citrus clementina; type=EST; length=615bp
CTTGAATTAATTGGAAATTACTTAAATCTCCCTCTCCTCCCAAAAATGGC
GCCACCAGCATCATCCGGTATTGAAGAAGAAATTGCAGTTGATCGAGACG
GTTATGATTCTTCAAACGCAACAAAGACAGTATGCGTAATGGACGCCTCT
GGCCACTTTGCCTCCGCCCTCGTCCGCCGTCTCTTGCTTAGAGGCTACAC
CGTCCACGCTGCCCTCCACAACCACGGAAAATTGCAGTGTATCGAAGGAG
AGTTAATTAATTACAACGAGGAGAAGAAATTGAAAGTTTTCCAGGCAGAC
CCCTTTGATTACCACAGCCTCGTGAATGCTTTAAAGGGTTGCTCCGGTCT
GTTCTACTCCTTTGAGCCTCCCTCCGACCACTCCACCTACGATGAATTGA
CGGCGGAAGTAGAGACAATGGCAGCTCACAACGTGCTGGAAGCGTGCGCA
CAGACAAATACAGTTGACAAAGTCGTCTTCACGTCTTCTCTAACCGCCGT
CGTCTGGAGTAACCACCGCGACAATCCGACGTCGCACGACTTCGATGAGC
GAAATTGGAGTGACGTCAATTTGTGCAAGAAATTCAAGCTATGGCATGGT
TTGTCAAAGACGCTG
back to top