CX295821

Overview
NameCX295821
Unique NameCX295821
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length663
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295821_ssr17 microsatellite CX295821_ssr17:17..30. BLAST: Citrus ESTs to Prunus persica proteins V1
CX295821_ssr415 microsatellite CX295821_ssr415:415..426. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig9493 contig Ccv1_Contig9493:42..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295821 vs. ExPASy Swiss-Prot
Match: GLO2_RAT (Hydroxyacylglutathione hydrolase, mitochondrial OS=Rattus norvegicus GN=Hagh PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.532e-11
Identity = 62/193 (32.12%), Postives = 83/193 (43.01%), Query Frame = 1
Query:  106 VVPGPRQLCLRKGLLYGFM---RLLSMPFKTLHLASRSLRVAEFCSISNMSSSLQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXEL-KARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYF--PGS---AAVFTGDTLF 657
            +V G   LCLR   + G     R L      L L     R     +++     ++IEL+P L DNY YL+ D DT    VVDP +   VI+ + +    LT +              +L K   G KV G     DRI  +   +            V  + TP HT GHI ++   PGS   +AVFTGDTLF
Sbjct:    1 MVLGRGSLCLRSLSVLGAACARRGLGQALLGLSLCHTDFRK----NLTVQQDMMKIELLPALTDNYMYLIIDEDTQEAAVVDPVQPQKVIETVKKHRVKLTTVLTTHHHWDHAGGNEKLVKLEPGLKVYGG---DDRIGALTHKVTHLSTLEVGSLSVKCLSTPCHTSGHICYFVSKPGSSEPSAVFTGDTLF 186          
BLAST of CX295821 vs. ExPASy Swiss-Prot
Match: GLO2_ERWT9 (Hydroxyacylglutathione hydrolase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=gloB PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.532e-11
Identity = 44/135 (32.59%), Postives = 67/135 (49.63%), Query Frame = 1
Query:  256 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFS 660
            + +  +P L+DNY + L+D D+G   +VDP EA PV+ A++        I              EL + Y    +  G  +    G + ++ DGD+    G +  +I TPGHT GHIS++      +F GDTLFS
Sbjct:    1 MNLTSIPALQDNYIWTLND-DSGRCLIVDPGEAAPVLRAITENQWQPQAILLTHHHHDHVGGVAELLSHYPDLTV-YGPQETSHKGANSLVGDGDRIHVLGLDFTIIATPGHTLGHISYF--SHPYLFCGDTLFS 131          
BLAST of CX295821 vs. ExPASy Swiss-Prot
Match: GLO2_ECOL6 (Hydroxyacylglutathione hydrolase OS=Escherichia coli O6 GN=gloB PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.000e-11
Identity = 42/135 (31.11%), Postives = 67/135 (49.63%), Query Frame = 1
Query:  256 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFS 660
            + +  +P   DNY ++L+D + G   +VDP +A PV++A++  N     I              EL  ++  +++  G  + +  G   V+ D +     GHE  VI TPGHT GHI ++      +F GDTLFS
Sbjct:    1 MNLNSIPAFDDNYIWVLND-EAGRCLIVDPGDAEPVLNAIAANNWQPEAIFLTHHHHDHVGGVKELVKKF-PQIVVYGPQETQDKGTTQVVKDSETAFVLGHEFSVIATPGHTLGHICYF--SKPYLFCGDTLFS 131          
BLAST of CX295821 vs. ExPASy Swiss-Prot
Match: GLO2_SYNPX (Hydroxyacylglutathione hydrolase OS=Synechococcus sp. (strain WH8102) GN=gloB PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.613e-11
Identity = 50/146 (34.25%), Postives = 69/146 (47.26%), Query Frame = 1
Query:  244 MSSSLQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARY-GAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPG------SAAVFTGDTLFS 660
            M SSL    +P L+DN  ++    D   V  VDP+ A PVID L ++   L+ +               L  R+  A V+ +G D+ RIP   I ++DGD+    G  + V+D   HT  HI+F  P          VF GDTLFS
Sbjct:    1 MQSSLHA--LPVLQDNVLWIWVRGDEAAV--VDPAVAEPVIDWLQQRQLQLSAVLQTHHHADHIGGTPGLLERWPDAAVVAAGADRSRIPFQTISVSDGDQVTVLGRSLQVLDVAAHTSAHIAFVIPEQEDPDLGPVVFCGDTLFS 142          
BLAST of CX295821 vs. ExPASy Swiss-Prot
Match: GLO2_IDILO (Hydroxyacylglutathione hydrolase OS=Idiomarina loihiensis GN=gloB PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.412e-11
Identity = 43/135 (31.85%), Postives = 64/135 (47.41%), Query Frame = 1
Query:  256 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFS 660
            +++  +    DNY + +   D   V +VDP EA PV   L + ++++  I              EL  +    VIG   +   I  +   + +GD+    G +  V+ TPGHT  HISFY PG   +F GDTLFS
Sbjct:    1 MRVHAIEAFDDNYIWAIETNDKDKVIIVDPGEAQPVQQWLEQNSKSIETILVTHHHYDHTGGIAELIEQSPCPVIGP--ENPEIKTLTKTVTEGDELTVGGIQWQVLTTPGHTLDHISFYTPG--FLFCGDTLFS 131          
BLAST of CX295821 vs. ExPASy Swiss-Prot
Match: GLO2_HAHCH (Hydroxyacylglutathione hydrolase OS=Hahella chejuensis (strain KCTC 2396) GN=gloB PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 43/132 (32.58%), Postives = 62/132 (46.97%), Query Frame = 1
Query:  271 VPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFY--FPGSAAVFTGDTLFS 660
            +P   DNY + +   D G   VVDP +A PV+  L+  +  L  I              EL A +   V G    +  I  I + L +GD+       + V++TPGHT  HIS++    G+  +F GDTLFS
Sbjct:    7 IPAFNDNYIWSIQS-DQGDAWVVDPGDAQPVLRHLAENHLTLRGILITHHHHDHTGGVNELLANHPVPVYG--FMRSAIKAITVPLQEGDRVDLGDFSLEVLETPGHTLDHISYFGDIAGAPRLFCGDTLFS 135          
BLAST of CX295821 vs. ExPASy Swiss-Prot
Match: GLO2_BOVIN (Hydroxyacylglutathione hydrolase, mitochondrial OS=Bos taurus GN=HAGH PE=2 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 7.602e-11
Identity = 47/148 (31.76%), Postives = 66/148 (44.59%), Query Frame = 1
Query:  232 SISNMSSSLQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXEL-KARYGAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYF-----PGSAAVFTGDTLF 657
            S++    ++++EL+P L DNY YLL D DT    +VDP +   V++   +    LT +              +L K   G KV G     DRI  +   +            V  + TP HT GHI ++      P   AVFTGDTLF
Sbjct:   41 SLTVDQGTMKVELLPALTDNYMYLLIDEDTKEAAIVDPVQPQKVVETARKHGVKLTTVLTTHHHWDHAGGNEKLVKLEPGLKVYGG---DDRIGALTHKVTHLSTLQVGSLHVKCLSTPCHTSGHICYFVTKPNSPEPPAVFTGDTLF 185          
BLAST of CX295821 vs. ExPASy Swiss-Prot
Match: GLO2_STRMK (Hydroxyacylglutathione hydrolase OS=Stenotrophomonas maltophilia (strain K279a) GN=gloB PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.928e-11
Identity = 46/137 (33.58%), Postives = 72/137 (52.55%), Query Frame = 1
Query:  256 LQIELVPCLRDNYAYLLHDMDTGTVGVVDPSEAVPVIDALSRKNRNLTYIXXXXXXXXXXXXXXELKARY-GAKVIGSGVDKDRIPGIDIVLNDGDKWMFAGHEVHVIDTPGHTRGHISFYFPGSAAVFTGDTLFSL 663
            +++  +P   DNY + L   D GT  VVDP +A PV+ AL+ +   +  I               L+AR+ G +VI     ++RIP     + +G++    G   HV+  PGHTR HI+F+   +  +F+GD+LFSL
Sbjct:    1 MRLTALPAFADNYIWTLI-ADDGTAVVVDPGDAAPVL-ALADQGLRVDTILLTHHHDDHIGGVPALQARFPGVRVIAPV--EERIPTATGRVGEGERVQALGRTFHVLSVPGHTRSHIAFH--TAEHLFSGDSLFSL 131          
The following BLAST results are available for this feature:
BLAST of CX295821 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 128
Match NameE-valueIdentityDescription
GLO2_RAT1.532e-1132.12Hydroxyacylglutathione hydrolase, mitochondrial OS... [more]
GLO2_ERWT91.532e-1132.59Hydroxyacylglutathione hydrolase OS=Erwinia tasman... [more]
GLO2_ECOL62.000e-1131.11Hydroxyacylglutathione hydrolase OS=Escherichia co... [more]
GLO2_SYNPX2.613e-1134.25Hydroxyacylglutathione hydrolase OS=Synechococcus ... [more]
GLO2_IDILO3.412e-1131.85Hydroxyacylglutathione hydrolase OS=Idiomarina loi... [more]
GLO2_HAHCH7.602e-1132.58Hydroxyacylglutathione hydrolase OS=Hahella chejue... [more]
GLO2_BOVIN7.602e-1131.76Hydroxyacylglutathione hydrolase, mitochondrial OS... [more]
GLO2_STRMK9.928e-1133.58Hydroxyacylglutathione hydrolase OS=Stenotrophomon... [more]

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Properties
Property NameValue
Genbank descriptionC05076C04SK DroRLeaf1 Citrus clementina cDNA clone C05076C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295821 ID=CX295821; Name=CX295821; organism=Citrus clementina; type=EST; length=663bp
ATTTTTTCACAAAGGAAGAGAGAGAGAGAGATGCAAATGATCTCCAGAGC
ATCATCTGCTGCCATGGCCTCCTTCACTTGTTCAAGGGGGCAGAGTGGCC
TTTGTGTTGTGCCAGGACCAAGACAACTTTGCCTTAGAAAGGGTCTTCTG
TATGGTTTCATGCGCTTATTATCAATGCCATTCAAGACATTGCATTTAGC
AAGTCGATCTCTTAGAGTTGCTGAGTTTTGCAGTATCTCCAATATGTCAT
CATCGTTGCAAATTGAGTTGGTACCGTGTCTCAGGGACAACTATGCATAT
CTTTTACATGACATGGACACAGGTACTGTTGGAGTTGTTGATCCTTCTGA
AGCTGTTCCTGTGATAGATGCTTTGAGTAGGAAAAACCGAAATCTGACTT
ACATTCTAAATACACATCATCATCATGATCACACCGGTGGTAATTTGGAG
CTAAAAGCTAGGTACGGTGCAAAGGTGATTGGTTCAGGAGTAGACAAGGA
TAGGATCCCTGGCATTGATATAGTTTTGAATGATGGAGACAAATGGATGT
TTGCTGGTCATGAGGTGCACGTGATTGATACGCCTGGCCATACCCGAGGT
CATATTAGCTTCTACTTTCCTGGATCAGCGGCAGTTTTTACTGGGGACAC
TTTGTTCAGCTTA
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