CX295822

Overview
NameCX295822
Unique NameCX295822
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length655
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14588 contig Ccv1_Contig14588:76..730. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295822 vs. ExPASy Swiss-Prot
Match: RAB10_MOUSE (Ras-related protein Rab-10 OS=Mus musculus GN=Rab10 PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.212e-54
Identity = 102/178 (57.30%), Postives = 135/178 (75.84%), Query Frame = 2
Query:   89 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-KNRMASQPASNN 619
            YD LFKLLLIGDSGVGK+C+L RF+DD++  ++ISTIG+DFKI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+   +VV     +  A E GI F ETSAK+  N+E+AF+ +A  I +     +P S N
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSEN 183          
BLAST of CX295822 vs. ExPASy Swiss-Prot
Match: RAB10_HUMAN (Ras-related protein Rab-10 OS=Homo sapiens GN=RAB10 PE=1 SV=1)

HSP 1 Score: 211.46 bits (537), Expect = 3.212e-54
Identity = 102/178 (57.30%), Postives = 135/178 (75.84%), Query Frame = 2
Query:   89 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-KNRMASQPASNN 619
            YD LFKLLLIGDSGVGK+C+L RF+DD++  ++ISTIG+DFKI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+   +VV     +  A E GI F ETSAK+  N+E+AF+ +A  I +     +P S N
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSEN 183          
BLAST of CX295822 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 210.305 bits (534), Expect = 7.157e-54
Identity = 102/178 (57.30%), Postives = 134/178 (75.28%), Query Frame = 2
Query:   89 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-KNRMASQPASNN 619
            YD LFKLLLIGDSGVGK+C+L RF+DD++  ++ISTIG+DFKI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+   +VV     +  A E GI F ETSAK   N+E+AF+ +A  I +     +P S N
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKVNINIEKAFLTLAEDILRKTPVKEPNSEN 183          
BLAST of CX295822 vs. ExPASy Swiss-Prot
Match: RAB10_CHICK (Ras-related protein Rab-10 OS=Gallus gallus GN=RAB10 PE=2 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 9.347e-54
Identity = 101/178 (56.74%), Postives = 134/178 (75.28%), Query Frame = 2
Query:   89 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-KNRMASQPASNN 619
            YD LFKLLLIGDSGVGK+C+L RF+DD++  ++ISTIG+D KI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+   +VV     +  A E GI F ETSAK+  N+E+AF+ +A  I +     +P S N
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDLKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVPKAKGEQIAREHGIRFFETSAKANINIEKAFLTLAEDILRKTPVKEPNSEN 183          
BLAST of CX295822 vs. ExPASy Swiss-Prot
Match: RAB10_DISOM (Ras-related protein Rab-10 OS=Discopyge ommata PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 3.552e-53
Identity = 98/165 (59.39%), Postives = 129/165 (78.18%), Query Frame = 2
Query:   89 YDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI 583
            YD LFKLLLIGDSGVGK+C+L RF+DD++  ++ISTIG+DFKI+TVE  GK IKLQIWDTAGQERF TIT+SYYRGA GI++VYD+T+ +SF N+ +WL  ID +A+E+V ++L+GNKCD+   +VV     +  A E  I F ETSAK+  N+E+AF+ +A  I
Sbjct:    6 YDLLFKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELHGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNAKSFENISKWLRNIDEHANEDVERMLLGNKCDMEDKRVVLKSKGEQIAREHAIRFFETSAKANINIEKAFLTLAEDI 170          
BLAST of CX295822 vs. ExPASy Swiss-Prot
Match: SEC4_CANAL (Ras-related protein SEC4 OS=Candida albicans GN=SEC4 PE=3 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.639e-53
Identity = 96/173 (55.49%), Postives = 128/173 (73.99%), Query Frame = 2
Query:   74 TMNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASIKNR 592
            T +  YD + KLLL+GDSGVGKSCLLLRF +D +  S+I+TIG+DFKIRT+E  GK IKLQ+WDTAGQERFRTIT++YYRGA GI+++YDVTD  SF NV+ W   + ++A+E+    LVGNKCD   N+ VS E  +  A ++ +PF+E SAKS  NV+  F  +A+ I+ +
Sbjct:    6 TSSRAYDMIMKLLLVGDSGVGKSCLLLRFVEDKFNPSFITTIGIDFKIRTIESKGKRIKLQVWDTAGQERFRTITTAYYRGAMGIVLIYDVTDSRSFENVENWFQTVTQHANEDAQIFLVGNKCDDEVNRQVSKEQGQELAAKLNVPFLEASAKSNENVDSIFYELASIIQEK 178          
BLAST of CX295822 vs. ExPASy Swiss-Prot
Match: RABG2_DICDI (Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3 SV=2)

HSP 1 Score: 207.608 bits (527), Expect = 4.639e-53
Identity = 101/173 (58.38%), Postives = 131/173 (75.72%), Query Frame = 2
Query:   98 LFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI-KNRMASQPAS 613
            +FK+LLIGDS VGK+ LLLRFAD+S+ E+ ++   VD+K + +  DG+T  LQIWDTAGQERFRTITSS+YRGAHG++V YDVTDQ ++NNV+ W+ EI RYA   V+++LVGNKCDL   K+V+   A+ +AD +GIPFME SA +  NVE+AFMAMA  I +N M     S
Sbjct:    6 VFKILLIGDSAVGKTSLLLRFADNSFQETSVNMTSVDYKNKNIVIDGRTFNLQIWDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVRLWMQEIQRYAVLGVSRVLVGNKCDLEDRKLVNTSIAREYADSLGIPFMEASAATGVNVEEAFMAMANEIYRNHMGGSKPS 178          
BLAST of CX295822 vs. ExPASy Swiss-Prot
Match: RAB35_RAT (Ras-related protein Rab-35 OS=Rattus norvegicus GN=Rab35 PE=2 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.639e-53
Identity = 109/180 (60.56%), Postives = 136/180 (75.56%), Query Frame = 2
Query:   77 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI----KNRMASQ 604
            M  +YD+LFKLL+IGDSGVGKS LLLRFAD+++  SYI+TIGVDFKIRTVE +G+ +KLQIWDTAGQERFRTITS+YYRG HG+IVVYDVT  ESF NVK+WL+EI++   ++V ++LVGNK D    KVV  E A  FA ++GI   ETSAK   NVE+ F  +   +    K+ +A Q
Sbjct:    1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 179          
BLAST of CX295822 vs. ExPASy Swiss-Prot
Match: RAB35_MOUSE (Ras-related protein Rab-35 OS=Mus musculus GN=Rab35 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.639e-53
Identity = 109/180 (60.56%), Postives = 136/180 (75.56%), Query Frame = 2
Query:   77 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI----KNRMASQ 604
            M  +YD+LFKLL+IGDSGVGKS LLLRFAD+++  SYI+TIGVDFKIRTVE +G+ +KLQIWDTAGQERFRTITS+YYRG HG+IVVYDVT  ESF NVK+WL+EI++   ++V ++LVGNK D    KVV  E A  FA ++GI   ETSAK   NVE+ F  +   +    K+ +A Q
Sbjct:    1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 179          
BLAST of CX295822 vs. ExPASy Swiss-Prot
Match: RAB35_HUMAN (Ras-related protein Rab-35 OS=Homo sapiens GN=RAB35 PE=1 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 4.639e-53
Identity = 109/180 (60.56%), Postives = 136/180 (75.56%), Query Frame = 2
Query:   77 MNNEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLESYISTIGVDFKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKCDLTANKVVSYETAKAFADEIGIPFMETSAKSATNVEQAFMAMAASI----KNRMASQ 604
            M  +YD+LFKLL+IGDSGVGKS LLLRFAD+++  SYI+TIGVDFKIRTVE +G+ +KLQIWDTAGQERFRTITS+YYRG HG+IVVYDVT  ESF NVK+WL+EI++   ++V ++LVGNK D    KVV  E A  FA ++GI   ETSAK   NVE+ F  +   +    K+ +A Q
Sbjct:    1 MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DDVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQ 179          
The following BLAST results are available for this feature:
BLAST of CX295822 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB10_MOUSE3.212e-5457.30Ras-related protein Rab-10 OS=Mus musculus GN=Rab1... [more]
RAB10_HUMAN3.212e-5457.30Ras-related protein Rab-10 OS=Homo sapiens GN=RAB1... [more]
RAB10_CANFA7.157e-5457.30Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]
RAB10_CHICK9.347e-5456.74Ras-related protein Rab-10 OS=Gallus gallus GN=RAB... [more]
RAB10_DISOM3.552e-5359.39Ras-related protein Rab-10 OS=Discopyge ommata PE=... [more]
SEC4_CANAL4.639e-5355.49Ras-related protein SEC4 OS=Candida albicans GN=SE... [more]
RABG2_DICDI4.639e-5358.38Ras-related protein RabG2 OS=Dictyostelium discoid... [more]
RAB35_RAT4.639e-5360.56Ras-related protein Rab-35 OS=Rattus norvegicus GN... [more]
RAB35_MOUSE4.639e-5360.56Ras-related protein Rab-35 OS=Mus musculus GN=Rab3... [more]
RAB35_HUMAN4.639e-5360.56Ras-related protein Rab-35 OS=Homo sapiens GN=RAB3... [more]

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Properties
Property NameValue
Genbank descriptionC05076C05SK DroRLeaf1 Citrus clementina cDNA clone C05076C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295822 ID=CX295822; Name=CX295822; organism=Citrus clementina; type=EST; length=655bp
TTCTTGCCGGAAATTAAATTTCTCATCATCTCGTCGAAGCTTCTGTGATT
CATTCGATCCAACGCACGACACGACCATGAATAACGAATACGATTATTTG
TTTAAGCTTTTGCTCATAGGCGATTCTGGTGTTGGCAAATCGTGTCTACT
TTTGAGGTTTGCTGATGATTCTTATCTGGAAAGCTACATTAGCACCATTG
GAGTTGACTTTAAAATCCGCACTGTGGAACAAGATGGCAAAACCATTAAG
CTCCAAATTTGGGACACTGCTGGCCAAGAGCGTTTTAGGACAATAACCAG
CAGCTACTATCGTGGGGCTCATGGCATCATTGTTGTTTATGATGTCACAG
ATCAAGAAAGCTTCAACAATGTAAAGCAATGGTTGAATGAAATTGACCGA
TATGCAAGTGAAAATGTGAACAAGCTTTTAGTTGGTAACAAGTGTGATCT
CACAGCGAACAAAGTTGTGTCCTATGAGACAGCCAAGGCATTTGCGGATG
AAATTGGGATTCCTTTCATGGAAACAAGTGCTAAAAGTGCCACCAACGTC
GAACAGGCTTTCATGGCCATGGCTGCTTCAATCAAGAATAGGATGGCAAG
CCAACCTGCGTCGAACAATGCTAGGCCGCCAACAGTGCAGATCCGAGGAC
AGCCT
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