CX295829

Overview
NameCX295829
Unique NameCX295829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_CYAA5 (Nucleoside diphosphate kinase OS=Cyanothece sp. (strain ATCC 51142) GN=ndk PE=3 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 9.164e-45
Identity = 86/149 (57.72%), Postives = 101/149 (67.79%), Query Frame = 1
Query:  244 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            +E T+IM+KPDGVQRGLVG++I RFE               K+LAEEHY     +PFF  L+E+I S PVV M WEG GVVASARKLIG+T+PL AEPGTIRGD  V  GRN++HGSD+ E  +REI LWF E EL  W P    WL E
Sbjct:    1 MERTFIMIKPDGVQRGLVGEVIGRFEAKGFTLVGLKLMSVSKELAEEHYDVHKERPFFGSLVEFICSSPVVAMVWEGDGVVASARKLIGATNPLSAEPGTIRGDFGVSVGRNLIHGSDAIETAQREISLWFNEKELSSWEPTAKTWLYE 149          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_SYNPX (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain WH8102) GN=ndk PE=3 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 2.042e-44
Identity = 85/145 (58.62%), Postives = 102/145 (70.34%), Query Frame = 1
Query:  247 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQW 681
            E T+I +KPDGVQRGLVG+I+ RFE               + LAE+HY     +PFF  L+++ITSGPVV M WEG GV+ASARKLIG+T PL+AEPGTIRGDLAV  GRNV+HGSD+PE  + EIGLWF   EL  WTP+   W
Sbjct:    3 ERTFIAIKPDGVQRGLVGEILGRFERKGFKLVGLKQITPSRALAEQHYGVHKERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDAPETAEFEIGLWFDAAELNDWTPSDQTW 147          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_ACAM1 (Nucleoside diphosphate kinase OS=Acaryochloris marina (strain MBIC 11017) GN=ndk PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.666e-44
Identity = 81/149 (54.36%), Postives = 105/149 (70.47%), Query Frame = 1
Query:  244 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            +E T++ VKPDGVQRGLVG+IISR+E               ++LAE+HY +   KPFF  L+++ITSGPVV M WEG GVVA+ARK+IG+T+PL +EPGTIRGD  +  GRN++HGSD+ E  +REI LWFK  EL  W+P    W+ E
Sbjct:    1 MERTFLAVKPDGVQRGLVGEIISRYEAKGFTLVGLKLMVVSRELAEQHYGEHKEKPFFSGLVDFITSGPVVAMVWEGKGVVAAARKIIGATNPLGSEPGTIRGDFGIDIGRNIIHGSDAVETAQREISLWFKSEELADWSPTLTSWIYE 149          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_NOSP7 (Nucleoside diphosphate kinase OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=ndk PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.548e-44
Identity = 82/149 (55.03%), Postives = 104/149 (69.80%), Query Frame = 1
Query:  244 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            +E T++ +KPDGVQRGLVG+II RFE            +  K+LAE+HY     +PFF  L+E+ITS PVV M WEG GVVASARK+IG+T+PL +EPGTIRGD  +  GRN++HGSD+PE  ++EI LWFK+ EL  W P    WL E
Sbjct:    1 MERTFLAIKPDGVQRGLVGEIIRRFETKGFTLVGLKFLKVSKELAEQHYGVHRERPFFGSLVEFITSSPVVAMVWEGDGVVASARKIIGATNPLTSEPGTIRGDFGINIGRNLIHGSDAPETAQQEIALWFKDEELVNWQPHITPWLHE 149          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_SYNJB (Nucleoside diphosphate kinase OS=Synechococcus sp. GN=ndk PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.940e-44
Identity = 81/149 (54.36%), Postives = 101/149 (67.79%), Query Frame = 1
Query:  244 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            +E T+I +KPDGVQRGLVG II R E            Q  ++LAE HY +   +PFF  L+++ITSGPVV M W+G GV+A+ARKLIG T+PL+AEPGTIRGD  +  GRN++HGSD  E  +REI LWF E EL  WTP    W+ E
Sbjct:    1 MERTFIAIKPDGVQRGLVGTIIQRLESRGYQLVGLKLVQVSQELAEAHYAEHKERPFFHSLVKFITSGPVVAMVWQGKGVIAAARKLIGKTNPLEAEPGTIRGDFGIDIGRNLIHGSDGVETAQREIALWFDESELVSWTPVAQSWIYE 149          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_MICAN (Nucleoside diphosphate kinase OS=Microcystis aeruginosa (strain NIES-843) GN=ndk PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.940e-44
Identity = 79/149 (53.02%), Postives = 102/149 (68.46%), Query Frame = 1
Query:  244 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            +E T++M+KPDGVQR LVG+II RFE            Q   +LAE+HY     +PFF  L+++ITS PVV M W+G GV+ASARK+IG+T+PL AEPGTIRGD  +  GRN++HGSD P+  K E+ LWF + EL  WTPA   W+ E
Sbjct:    1 MERTFLMIKPDGVQRNLVGEIIQRFETKGFTLVGLKMMQVSSELAEKHYAVHKERPFFRSLVDFITSSPVVAMVWQGEGVIASARKIIGATNPLNAEPGTIRGDFGISVGRNLIHGSDGPDTAKDEVSLWFSDAELANWTPAITPWVVE 149          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_SYNS3 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9311) GN=ndk PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.758e-44
Identity = 81/145 (55.86%), Postives = 102/145 (70.34%), Query Frame = 1
Query:  247 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQW 681
            E ++I +KPDGVQRGLVG+I+ RFE               ++LAE+HY     +PFF  L+++ITSGPVV M WEG GV+ SARK+IG+T PL+AEPGTIRGDLA+  GRNV+HGSD+PE  + EIGLWF   EL  WTP+   W
Sbjct:    4 ERSFIAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLTPSRELAEQHYGVHKERPFFGGLVDFITSGPVVAMVWEGDGVITSARKMIGATKPLEAEPGTIRGDLAINIGRNVIHGSDAPETAEFEIGLWFNPSELSDWTPSDQTW 148          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK1_ORYSJ (Nucleoside diphosphate kinase 1 OS=Oryza sativa subsp. japonica GN=NDKR PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.758e-44
Identity = 83/149 (55.70%), Postives = 105/149 (70.47%), Query Frame = 1
Query:  244 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            +E+++IM+KPDGVQRGL+GDIISRFE               +  A++HY DL+ KPFFP L+EYI SGPVV M WEG  VVA+ R++IG+T P +A PGTIR D AV+ GRNV+HGSDS +NGK+EI LWF EG L +W      W+ E
Sbjct:    1 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVDNGKKEIALWFPEG-LAEWRSNLHPWIYE 148          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK1_ORYSI (Nucleoside diphosphate kinase 1 OS=Oryza sativa subsp. indica GN=NDKR PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.758e-44
Identity = 83/149 (55.70%), Postives = 105/149 (70.47%), Query Frame = 1
Query:  244 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            +E+++IM+KPDGVQRGL+GDIISRFE               +  A++HY DL+ KPFFP L+EYI SGPVV M WEG  VVA+ R++IG+T P +A PGTIR D AV+ GRNV+HGSDS +NGK+EI LWF EG L +W      W+ E
Sbjct:    1 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFFLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVDNGKKEIALWFPEG-LAEWRSNLHPWIYE 148          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK1_SACOF (Nucleoside diphosphate kinase 1 OS=Saccharum officinarum GN=NDPK1 PE=1 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.013e-43
Identity = 84/149 (56.38%), Postives = 104/149 (69.80%), Query Frame = 1
Query:  244 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            +E T+IM+KPDGVQRGL+G+IISRFE               +  AE+HY DL+SKPFF  L++YI SGPVV M WEG  VV + RK+IG+T+PL +EPGTIRGD AV  GRNV+HGSDS E+  +EI LWF EG L  W  +Q  W+ E
Sbjct:    1 MESTFIMIKPDGVQRGLIGEIISRFEKKGFYLKALKLVNVERSFAEKHYADLSSKPFFQGLVDYIISGPVVAMVWEGKSVVTTGRKIIGATNPLVSEPGTIRGDFAVDIGRNVIHGSDSIESANKEIALWFPEG-LADWQSSQHPWIYE 148          
The following BLAST results are available for this feature:
BLAST of CX295829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_CYAA59.164e-4557.72Nucleoside diphosphate kinase OS=Cyanothece sp. (s... [more]
NDK_SYNPX2.042e-4458.62Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_ACAM12.666e-4454.36Nucleoside diphosphate kinase OS=Acaryochloris mar... [more]
NDK_NOSP74.548e-4455.03Nucleoside diphosphate kinase OS=Nostoc punctiform... [more]
NDK_SYNJB5.940e-4454.36Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_MICAN5.940e-4453.02Nucleoside diphosphate kinase OS=Microcystis aerug... [more]
NDK_SYNS37.758e-4455.86Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK1_ORYSJ7.758e-4455.70Nucleoside diphosphate kinase 1 OS=Oryza sativa su... [more]
NDK1_ORYSI7.758e-4455.70Nucleoside diphosphate kinase 1 OS=Oryza sativa su... [more]
NDK1_SACOF1.013e-4356.38Nucleoside diphosphate kinase 1 OS=Saccharum offic... [more]

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Properties
Property NameValue
Genbank descriptionC05076C12SK DroRLeaf1 Citrus clementina cDNA clone C05076C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295829 ID=CX295829; Name=CX295829; organism=Citrus clementina; type=EST; length=710bp
GAGGGTGTAGGTGCGTTAGGTGTGTCATCATCACCAACTCTGGTTGGGAA
GATAAGTTGCAGCAGACGCTTATCCTACAGCTCCAACAAGCTTACCCTGC
GCACCACCAGCCACCTTGCAGCATTCCACCCACAGTCCCATCTTTTCGTA
AAATTCCCACCATGTCCTCAACGCAAAACAGTTGCTCGCAACTCCAACGA
AACCGGCATCTTCCTTCCCCACTTGGTCGCTTCCATGGAACAAGTTGAGG
AGACTTACATTATGGTGAAACCAGATGGTGTTCAACGTGGTCTGGTTGGC
GACATTATTTCAAGGTTTGAGAAGAAGGGATTCAAACTGACTGGCTTGAA
GCTCTTTCAATGCCCGAAAGATTTAGCTGAGGAGCACTATAAGGATCTCA
ATTCCAAACCATTTTTTCCTAAACTGATTGAGTACATTACTTCAGGACCA
GTTGTATGTATGGCATGGGAGGGTGCTGGTGTGGTGGCATCTGCACGTAA
GTTAATAGGGTCAACGGATCCTCTTCAAGCTGAACCAGGCACAATAAGAG
GGGATCTTGCTGTTCAAACTGGAAGGAATGTGGTCCATGGGAGTGACAGC
CCTGAGAATGGCAAGCGTGAAATAGGTCTGTGGTTCAAAGAAGGTGAGTT
GTGTCAGTGGACACCAGCTCAAGCACAGTGGTTAAGGGAGTAATATTCAT
CAACACTTAC
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