CX295829

Overview
NameCX295829
Unique NameCX295829
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_SYNS9 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9902) GN=ndk PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.323e-43
Identity = 83/145 (57.24%), Postives = 102/145 (70.34%), Query Frame = 1
Query:  247 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQW 681
            E T++ +KPDGVQRGLVG+I+ RFE               + LAEEHY     +PFF  L+ +ITSGPVV M WEG GV+ASARKLIG+T PL++EPGTIRGDLAV  GRNV+HGSD+PE  + EIGLWF+  EL  W+P+   W
Sbjct:    3 ERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQITPSRALAEEHYGVHKERPFFAGLVGFITSGPVVAMVWEGDGVIASARKLIGATKPLESEPGTIRGDLAVNIGRNVIHGSDAPETAEFEIGLWFQPSELNDWSPSDQAW 147          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_SYNP2 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndk PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.323e-43
Identity = 81/149 (54.36%), Postives = 100/149 (67.11%), Query Frame = 1
Query:  244 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            +E T++MVKPDGVQRGLVGD+I RFE               ++LAE+HY     +PFF  L+E+I S PVV M WEG G +A+ARK+IG+T+PL+AEPGTIRGD  V  GRN++HGSD P+    EI LWF E EL  W PA   WL E
Sbjct:    1 MERTFVMVKPDGVQRGLVGDVIRRFEAKGFKLVGLKLVSVSRELAEQHYGVHRERPFFGSLVEFIISVPVVAMVWEGKGAIAAARKIIGATNPLEAEPGTIRGDFGVDIGRNLIHGSDGPDTAASEIALWFSESELANWEPATKAWLYE 149          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_TRIEI (Nucleoside diphosphate kinase OS=Trichodesmium erythraeum (strain IMS101) GN=ndk PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.728e-43
Identity = 84/149 (56.38%), Postives = 101/149 (67.79%), Query Frame = 1
Query:  244 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            +E T+I +KPDGVQRGLVG IISRFE               K+LAE+HY     +PFF  LIE+I SGP+V M WEG GVVASARK+IG+T+PL AEPGTIRGD  +  GRN++HGSD+ E  + EI LWFKE EL  W P    W+ E
Sbjct:    1 MERTFIAIKPDGVQRGLVGQIISRFETKGFTLVGLKIMTVTKELAEKHYDVHKERPFFSSLIEFIKSGPLVAMVWEGEGVVASARKIIGATNPLTAEPGTIRGDYGISLGRNLIHGSDAIETAQTEINLWFKEEELVSWKPTLTSWIVE 149          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_PROM3 (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9303) GN=ndk PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 1.728e-43
Identity = 83/146 (56.85%), Postives = 101/146 (69.18%), Query Frame = 1
Query:  244 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQW 681
            VE T++ +KPDGVQRGLVG+I+ RFE               ++LA EHY     +PFF  L+++ITSGPVV M WEG GV+ASARKLIG+T PL+AEPGTIRGDLAV  GRNV+HGSD P+  + EI LWF   EL  WTP+   W
Sbjct:    3 VERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQLAPSRELAGEHYGVHRERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDGPDTAQFEINLWFSPEELNAWTPSDQSW 148          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_PROMM (Nucleoside diphosphate kinase OS=Prochlorococcus marinus (strain MIT 9313) GN=ndk PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.948e-43
Identity = 82/146 (56.16%), Postives = 100/146 (68.49%), Query Frame = 1
Query:  244 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQW 681
            +E T++ +KPDGVQRGLVG+I+ RFE               +DLA EHY     +PFF  L+++ITSGPV+ M WEG GV+ASARKLIG+T PL AEPGTIRGDLAV  GRNV+HGSD P+  + EI LWF   EL  WTP+   W
Sbjct:    3 MERTFVAIKPDGVQRGLVGEILGRFERKGFKLVGLKQVTPSRDLAGEHYGVHRERPFFAGLVDFITSGPVIAMVWEGDGVIASARKLIGATKPLDAEPGTIRGDLAVNIGRNVIHGSDGPDTAQFEINLWFSAEELNAWTPSDQSW 148          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK_SYNSC (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain CC9605) GN=ndk PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.850e-43
Identity = 83/145 (57.24%), Postives = 102/145 (70.34%), Query Frame = 1
Query:  247 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQW 681
            E T+I +KPDGVQRGLVG+I+ RFE               + LAE+HY     +PFF  L+++ITSGPVV M WEG GV+ASARKLIG+T PL+AEPGTIRGDLAV  GRNV+HGSD+ E  + EIGLWF+  EL  W+P+   W
Sbjct:    3 ERTFIAIKPDGVQRGLVGEILGRFERKGFKLVGLKQITPSRALAEQHYGVHKERPFFAGLVDFITSGPVVAMVWEGDGVIASARKLIGATKPLEAEPGTIRGDLAVNIGRNVIHGSDAAETAQFEIGLWFQASELNDWSPSDQGW 147          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK1_SPIOL (Nucleoside diphosphate kinase 1 OS=Spinacia oleracea GN=NDPK1 PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.850e-43
Identity = 82/149 (55.03%), Postives = 106/149 (71.14%), Query Frame = 1
Query:  244 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            +E+T+IM+KPDGVQRGLVG+IISRFE               +  AE+HY DL++KPFF  L+EYI SGPVV M WEG GVVA+ RKLIG+T+PL +EPGTIRGD A+  GRNV+HGSD+ ++  +EI LWF +G +  W  +   W+ E
Sbjct:    1 MEQTFIMIKPDGVQRGLVGEIISRFEKKGFSLKALKFVNVDRPFAEKHYADLSAKPFFNGLVEYIVSGPVVAMVWEGKGVVATGRKLIGATNPLASEPGTIRGDFAIDIGRNVIHGSDAVDSATKEIALWFPDG-VVHWQSSLHSWIYE 148          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDKA_DROYA (Nucleoside diphosphate kinase (Fragment) OS=Drosophila yakuba GN=awd PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.029e-43
Identity = 79/148 (53.38%), Postives = 102/148 (68.92%), Query Frame = 1
Query:  247 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            E T+IMVKPDGVQRGLVG II RFE               K+L E+HY DL+++PFFP L+ Y+ SGPVV M WEG  VV + R+++G+T+P  + PGTIRGD  +Q GRN++HGSD+ E+ ++EI LWF E EL  WTPA   W+ E
Sbjct:    3 ERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFPGLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGDFCIQVGRNIIHGSDAVESAEKEIALWFNEKELVTWTPAAKDWIYE 150          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDKA_DROME (Nucleoside diphosphate kinase OS=Drosophila melanogaster GN=awd PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 5.029e-43
Identity = 79/148 (53.38%), Postives = 102/148 (68.92%), Query Frame = 1
Query:  247 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            E T+IMVKPDGVQRGLVG II RFE               K+L E+HY DL+++PFFP L+ Y+ SGPVV M WEG  VV + R+++G+T+P  + PGTIRGD  +Q GRN++HGSD+ E+ ++EI LWF E EL  WTPA   W+ E
Sbjct:    6 ERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFPGLVNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGDFCIQVGRNIIHGSDAVESAEKEIALWFNEKELVTWTPAAKDWIYE 153          
BLAST of CX295829 vs. ExPASy Swiss-Prot
Match: NDK1_MESCR (Nucleoside diphosphate kinase 1 OS=Mesembryanthemum crystallinum GN=NDKP1 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.029e-43
Identity = 82/149 (55.03%), Postives = 105/149 (70.47%), Query Frame = 1
Query:  244 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 690
            +E+T+IM+KPDGVQRGLVG+IISRFE               +  AE+HY DL++KPFF  L+EYI SGPVV M WEG GVV + RK+IG+T+PL +EPGTIRGD A+  GRNV+HGSD+ E+  +EI LWF EG +  W  +   W+ E
Sbjct:    1 MEQTFIMIKPDGVQRGLVGEIISRFEKKGFSLKALKFINVDRPFAEKHYADLSAKPFFNGLVEYIVSGPVVAMVWEGKGVVLTGRKIIGATNPLASEPGTIRGDFAIDIGRNVIHGSDAVESATKEIALWFPEG-VVNWQSSLHSWIYE 148          
The following BLAST results are available for this feature:
BLAST of CX295829 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_SYNS91.323e-4357.24Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_SYNP21.323e-4354.36Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_TRIEI1.728e-4356.38Nucleoside diphosphate kinase OS=Trichodesmium ery... [more]
NDK_PROM31.728e-4356.85Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_PROMM2.948e-4356.16Nucleoside diphosphate kinase OS=Prochlorococcus m... [more]
NDK_SYNSC3.850e-4357.24Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK1_SPIOL3.850e-4355.03Nucleoside diphosphate kinase 1 OS=Spinacia olerac... [more]
NDKA_DROYA5.029e-4353.38Nucleoside diphosphate kinase (Fragment) OS=Drosop... [more]
NDKA_DROME5.029e-4353.38Nucleoside diphosphate kinase OS=Drosophila melano... [more]
NDK1_MESCR5.029e-4355.03Nucleoside diphosphate kinase 1 OS=Mesembryanthemu... [more]

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Properties
Property NameValue
Genbank descriptionC05076C12SK DroRLeaf1 Citrus clementina cDNA clone C05076C12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295829 ID=CX295829; Name=CX295829; organism=Citrus clementina; type=EST; length=710bp
GAGGGTGTAGGTGCGTTAGGTGTGTCATCATCACCAACTCTGGTTGGGAA
GATAAGTTGCAGCAGACGCTTATCCTACAGCTCCAACAAGCTTACCCTGC
GCACCACCAGCCACCTTGCAGCATTCCACCCACAGTCCCATCTTTTCGTA
AAATTCCCACCATGTCCTCAACGCAAAACAGTTGCTCGCAACTCCAACGA
AACCGGCATCTTCCTTCCCCACTTGGTCGCTTCCATGGAACAAGTTGAGG
AGACTTACATTATGGTGAAACCAGATGGTGTTCAACGTGGTCTGGTTGGC
GACATTATTTCAAGGTTTGAGAAGAAGGGATTCAAACTGACTGGCTTGAA
GCTCTTTCAATGCCCGAAAGATTTAGCTGAGGAGCACTATAAGGATCTCA
ATTCCAAACCATTTTTTCCTAAACTGATTGAGTACATTACTTCAGGACCA
GTTGTATGTATGGCATGGGAGGGTGCTGGTGTGGTGGCATCTGCACGTAA
GTTAATAGGGTCAACGGATCCTCTTCAAGCTGAACCAGGCACAATAAGAG
GGGATCTTGCTGTTCAAACTGGAAGGAATGTGGTCCATGGGAGTGACAGC
CCTGAGAATGGCAAGCGTGAAATAGGTCTGTGGTTCAAAGAAGGTGAGTT
GTGTCAGTGGACACCAGCTCAAGCACAGTGGTTAAGGGAGTAATATTCAT
CAACACTTAC
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